RLG00000030447

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000668
Physical Location & Seq
Reverse (-)
61533839 .. 61536042
2204 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030447

Sequence Viewer

Length: 765 bp
ATGATGATGGAATTGCTGCTTGTTCAATTCTTTGAGGTTCTTGCTGCTCATCTAATCAGCTTCTCCAAACTTCCTGCAACGTCAGATTTTTGGAGAAATATACATAAAGCCGGAGACCATCTCTCTGAATATGATGATGATCTCTTTATATCCGTATTTGATTGGCCGCTTTCTCTACAGCTTCAAAGATTTCATAAGCAAACCCCAATAGCACGTTCTCTGATAGACAGAAGAGGGGAGGAATTCCCTCCTCCTAGAACGACACAGTCGTCATCCAATCTGCTAACCCCGCTGTTCAAAAGACTCATGAGTTTCCATGGTTTGGAAAAAAAACCATATGTGGTAGGAACATCTAATGATTTAGTTTTGTGCTGTTTAAATCCACATGACCAACTTGATTTCTACATTTGCAATCCATGCACAAGGCAATGGATTTCTCCTCCTCCCACCACTGGACGTCTCACTAATGTACCTGTTAAATTCATCTGTGATCGCTACTATGAGGAGGAAGATACTACTAGTGGTACCAGTAGTACTTTTAATATTAAAAAGGACTACAGGTGCAAAGTTGTGAGAATTCTTCCTCACGATTTATCTAAATCTATCTGCGGTTGGATTTCCAGATTCATAGTTGAGGCCGGGCTTATAGGGTTGAATCCTTTCGTGATCGAAAATGGCAGTGCTAGTAGTGTTGATGATCTTTTAGACGAGCAATGTATATGTGTGACTGTGCACCGAGGGCATCTGCAAATGTGGGCGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

255

Amino Acids

29.16

Weight (kDa)

6.13

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 268
AatII GACGTC 1 cut(s) 460
Acc65I GGTACC 1 cut(s) 524
AccB1I GGYRCC 1 cut(s) 524
AccB7I CCANNNNNTGG 1 cut(s) 322
AciI CCGC 3 cut(s) 167, 290, 609
AcoI YGGCCR 1 cut(s) 164
AcsI RAATTY 3 cut(s) 242, 479, 576
AcyI GRCGYC 1 cut(s) 457
AfaI GTAC 4 cut(s) 471, 526, 535, 761
AfiI CCNNNNNNNGG 2 cut(s) 322, 452
AgsI TTSAA 4 cut(s) 26, 185, 298, 655
AhlI ACTAGT 1 cut(s) 518
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AluBI AGCT 2 cut(s) 60, 181
AluI AGCT 2 cut(s) 60, 181
Alw21I GWGCWC 1 cut(s) 735
Alw26I GTCTC 2 cut(s) 108, 464
Alw44I GTGCAC 1 cut(s) 731
AoxI GGCC 2 cut(s) 164, 636
ApaLI GTGCAC 1 cut(s) 731
ApeKI GCWGC 2 cut(s) 16, 44
ApoI RAATTY 3 cut(s) 242, 479, 576
Asp700I GAANNNNTTC 1 cut(s) 659
Asp718I GGTACC 1 cut(s) 524
AsuC2I CCSGG 1 cut(s) 640
BaeGI GKGCMC 1 cut(s) 735
BaeI ACNNNNGTAYC 2 cut(s) 453, 486
BanI GGYRCC 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 735
BbvI GCAGC 2 cut(s) 3, 31
BccI CCATC 1 cut(s) 126
BcnI CCSGG 1 cut(s) 640
BcoDI GTCTC 2 cut(s) 108, 464
BcuI ACTAGT 1 cut(s) 518
BfaI CTAG 3 cut(s) 255, 519, 684
BfmI CTRYAG 2 cut(s) 176, 556
BisI GCNGC 3 cut(s) 17, 45, 167
BlsI GCNGC 3 cut(s) 18, 46, 168
BmcAI AGTACT 1 cut(s) 535
Bme1390I CCNGG 1 cut(s) 640
BmiI GGNNCC 1 cut(s) 526
BmrFI CCNGG 1 cut(s) 640
BmsI GCATC 1 cut(s) 751
BplI GAGNNNNNCTC 2 cut(s) 105, 137
BpuMI CCSGG 1 cut(s) 640
BsaBI GATNNNNATC 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 457
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 316, 736
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 452
Bse1I ACTGG 2 cut(s) 457, 528
Bse3DI GCAATG 2 cut(s) 434, 719
Bse8I GATNNNNATC 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 316, 736
BseGI GGATG 1 cut(s) 272
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 322, 452
BseMI GCAATG 2 cut(s) 434, 719
BseNI ACTGG 2 cut(s) 457, 528
BseRI GAGGAG 4 cut(s) 240, 429, 432, 518
BseSI GKGCMC 1 cut(s) 735
BseXI GCAGC 2 cut(s) 3, 31
BshFI GGCC 2 cut(s) 166, 638
BshNI GGYRCC 1 cut(s) 524
BsiHKAI GWGCWC 1 cut(s) 735
BsiSI CCGG 2 cut(s) 111, 639
BslI CCNNNNNNNGG 2 cut(s) 322, 452
BsmAI GTCTC 2 cut(s) 108, 464
BsmBI CGTCTC 1 cut(s) 464
BsnI GGCC 2 cut(s) 166, 638
Bso31I GGTCTC 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 735
Bsp143I GATC 4 cut(s) 139, 490, 666, 697
Bsp19I CCATGG 1 cut(s) 316
BspACI CCGC 3 cut(s) 167, 290, 609
BspANI GGCC 2 cut(s) 166, 638
BspHI TCATGA 1 cut(s) 306
BspLI GGNNCC 1 cut(s) 526
BspT107I GGYRCC 1 cut(s) 524
BspTNI GGTCTC 1 cut(s) 108
BsrDI GCAATG 2 cut(s) 434, 719
BsrI ACTGG 2 cut(s) 457, 528
BssECI CCNNGG 2 cut(s) 316, 736
BssMI GATC 4 cut(s) 139, 490, 666, 697
BssNI GRCGYC 1 cut(s) 457
BssT1I CCWWGG 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 267, 730
Bst6I CTCTTC 1 cut(s) 226
BstACI GRCGYC 1 cut(s) 457
BstAPI GCANNNNNTGC 1 cut(s) 417
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 1 cut(s) 272
BstKTI GATC 4 cut(s) 142, 493, 669, 700
BstMAI GTCTC 2 cut(s) 108, 464
BstMBI GATC 4 cut(s) 139, 490, 666, 697
BstMWI GCNNNNNNNGC 3 cut(s) 289, 417, 739
BstSCI CCNGG 1 cut(s) 638
BstSFI CTRYAG 2 cut(s) 176, 556
BstSLI GKGCMC 1 cut(s) 735
BstV1I GCAGC 2 cut(s) 3, 31
BsuRI GGCC 2 cut(s) 166, 638
BtgI CCRYGG 1 cut(s) 316
BtsCI GGATG 1 cut(s) 272
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 2 cut(s) 450, 685
CciI TCATGA 1 cut(s) 306
Csp6I GTAC 4 cut(s) 470, 525, 534, 760
CviAII CATG 4 cut(s) 307, 317, 386, 417
CviJI RGCY 6 cut(s) 60, 110, 166, 181, 638, 643
CviKI_1 RGCY 6 cut(s) 60, 110, 166, 181, 638, 643
CviQI GTAC 4 cut(s) 470, 525, 534, 760
DpnI GATC 4 cut(s) 141, 492, 668, 699
DpnII GATC 4 cut(s) 139, 490, 666, 697
DraI TTTAAA 1 cut(s) 378
DrdI GACNNNNNNGTC 1 cut(s) 268
DseDI GACNNNNNNGTC 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 316
Eco31I GGTCTC 1 cut(s) 108
EcoRI GAATTC 2 cut(s) 242, 576
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
Esp3I CGTCTC 1 cut(s) 464
FaeI CATG 4 cut(s) 310, 320, 389, 420
FatI CATG 4 cut(s) 306, 316, 385, 416
FauI CCCGC 1 cut(s) 297
FauNDI CATATG 1 cut(s) 337
Fnu4HI GCNGC 3 cut(s) 17, 45, 167
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 3 cut(s) 17, 45, 167
FspBI CTAG 3 cut(s) 255, 519, 684
GluI GCNGC 3 cut(s) 17, 45, 167
HaeIII GGCC 2 cut(s) 166, 638
HapII CCGG 2 cut(s) 111, 639
Hin1I GRCGYC 1 cut(s) 457
Hin1II CATG 4 cut(s) 310, 320, 389, 420
HinfI GANTC 3 cut(s) 303, 624, 655
HpaII CCGG 2 cut(s) 111, 639
Hpy166II GTNNAC 1 cut(s) 733
Hpy188I TCNGA 3 cut(s) 85, 127, 222
Hpy188III TCNNGA 4 cut(s) 307, 587, 621, 664
Hpy8I GTNNAC 1 cut(s) 733
HpyCH4III ACNGT 2 cut(s) 267, 730
HpyCH4IV ACGT 3 cut(s) 80, 214, 457
HpyCH4V TGCA 6 cut(s) 77, 411, 420, 564, 733, 748
HpyF10VI GCNNNNNNNGC 3 cut(s) 289, 417, 739
HpySE526I ACGT 3 cut(s) 80, 214, 457
Hsp92I GRCGYC 1 cut(s) 457
Hsp92II CATG 4 cut(s) 310, 320, 389, 420
KpnI GGTACC 1 cut(s) 528
Kzo9I GATC 4 cut(s) 139, 490, 666, 697
LpnPI CCDG 8 cut(s) 87, 124, 438, 486, 541, 544, 634, 652
Lsp1109I GCAGC 2 cut(s) 3, 31
LweI GCATC 1 cut(s) 751
MaeI CTAG 3 cut(s) 255, 519, 684
MaeII ACGT 3 cut(s) 80, 214, 457
MaeIII GTNAC 1 cut(s) 724
MalI GATC 4 cut(s) 141, 492, 668, 699
MboI GATC 4 cut(s) 139, 490, 666, 697
MboII GAAGA 3 cut(s) 243, 521, 572
MhlI GDGCHC 1 cut(s) 735
MluCI AATT 5 cut(s) 11, 26, 242, 479, 576
MlyI GAGTC 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 593
MroXI GAANNNNTTC 1 cut(s) 659
MseI TTAA 4 cut(s) 377, 477, 540, 546
MspA1I CMGCKG 1 cut(s) 292
MspI CCGG 2 cut(s) 111, 639
MspR9I CCNGG 1 cut(s) 640
MwoI GCNNNNNNNGC 3 cut(s) 289, 417, 739
NciI CCSGG 1 cut(s) 640
NcoI CCATGG 1 cut(s) 316
NdeI CATATG 1 cut(s) 337
NdeII GATC 4 cut(s) 139, 490, 666, 697
NlaIII CATG 4 cut(s) 310, 320, 389, 420
NlaIV GGNNCC 1 cut(s) 526
NmuCI GTSAC 1 cut(s) 724
PagI TCATGA 1 cut(s) 306
PcsI WCGNNNNNNNCGW 1 cut(s) 266
PdmI GAANNNNTTC 1 cut(s) 659
PfeI GAWTC 2 cut(s) 624, 655
PflFI GACNNNGTC 1 cut(s) 265
PflMI CCANNNNNTGG 1 cut(s) 322
PkrI GCNGC 3 cut(s) 18, 46, 168
PleI GAGTC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 526
PsyI GACNNNGTC 1 cut(s) 265
RsaI GTAC 4 cut(s) 471, 526, 535, 761
RsaNI GTAC 4 cut(s) 470, 525, 534, 760
SaqAI TTAA 4 cut(s) 377, 477, 540, 546
SatI GCNGC 3 cut(s) 17, 45, 167
Sau3AI GATC 4 cut(s) 139, 490, 666, 697
ScaI AGTACT 1 cut(s) 535
SchI GAGTC 1 cut(s) 297
ScrFI CCNGG 1 cut(s) 640
SduI GDGCHC 1 cut(s) 735
SetI ASST 8 cut(s) 39, 62, 83, 183, 217, 460, 475, 563
SfaNI GCATC 1 cut(s) 751
SfcI CTRYAG 2 cut(s) 176, 556
SpeI ACTAGT 1 cut(s) 518
Sse9I AATT 5 cut(s) 11, 26, 242, 479, 576
SsiI CCGC 3 cut(s) 167, 290, 609
SspI AATATT 1 cut(s) 544
SspMI CTAG 3 cut(s) 255, 519, 684
StyD4I CCNGG 1 cut(s) 638
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 2 cut(s) 267, 730
TaiI ACGT 3 cut(s) 83, 217, 460
TaqI TCGA 1 cut(s) 669
TasI AATT 5 cut(s) 11, 26, 242, 479, 576
TatI WGTACW 1 cut(s) 533
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 2 cut(s) 624, 655
Tru1I TTAA 4 cut(s) 377, 477, 540, 546
Tru9I TTAA 4 cut(s) 377, 477, 540, 546
TscAI CASTG 2 cut(s) 457, 685
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 2 cut(s) 16, 44
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 3 cut(s) 182, 472, 616
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 2 cut(s) 457, 685
Tth111I GACNNNGTC 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 322
VneI GTGCAC 1 cut(s) 731
XapI RAATTY 3 cut(s) 242, 479, 576
XmnI GAANNNNTTC 1 cut(s) 659
XspI CTAG 3 cut(s) 255, 519, 684
ZraI GACGTC 1 cut(s) 458
ZrmI AGTACT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.