RLG00000030441

Dip2/Utp12 Family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000668
Physical Location & Seq
Forward (+)
61491155 .. 61499179
8025 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030441

Sequence Viewer

Length: 708 bp
ATGGCACCGAGTCCACCCCTAGATGAATATGATGAAATCAAAAATCAGAAGATGAAGACTAAAAAGTCAAGTAAGAAGCGTGCAGCACTGAAGCTAGATACTCCGGCTATTAAAGACAAGGTTGAAATTGAGACTGCAGATGGAGTCCTTGTTGATCAGGATTTGAACGAACCAACCACGGGAGAAAAACTTGCTAGTTTGAATATAGTACCTAATGATAGAGTGGAGAGCCAAAATAAAGAAGGGTCTTCTCTCCATGCAAAGCCTCCGATTGCATACTCTGTCATTGCAAAGTCTGTCTCTCAATTGAATCCAGCTGGTGTTTTGAAGCTCTTACAATCTCTCATATCTCTTATTGAGTCAAGTCTACTTCTTCAATACGCAAGTGGGATAGTGTCTCAAGAATCTTCTTTAAGTGCCTTGAACTCTTTATATCAGCTCATTGAGTCCAGAGTTTCCACTTTTCAGTCAGCTCTTCAACTATCAAGTGTTTTAGACTTGCTGTATACAGGGGTTGTTGATGATTTGGATGATGAGAATGGCACTACAGGTCCAATTATTTACGAGGACAAAGATAGTGATGAAGGGGAATCTGAGGACGCCATGGAGACTGATCAAGACGATGAAGATGGTGAGGATTTGGCTGCAGAACTTGGTGGTGTTAGCGACTTCGAAGGAATTGAAGGACTTGATGACTTGAGCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Utp12

Protein Analysis

236

Amino Acids

25.31

Weight (kDa)

4.11

Isoelectric Point (pI)

50.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 64
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 2 cut(s) 367, 506
AcuI CTGAAG 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 600
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 179
AgsI TTSAA 9 cut(s) 125, 166, 202, 310, 328, 377, 424, 479, 683
AluBI AGCT 5 cut(s) 94, 317, 331, 439, 473
AluI AGCT 5 cut(s) 94, 317, 331, 439, 473
Alw26I GTCTC 4 cut(s) 125, 304, 402, 602
ApeKI GCWGC 2 cut(s) 83, 644
AspS9I GGNCC 1 cut(s) 551
AsuHPI GGTGA 1 cut(s) 644
AsuII TTCGAA 1 cut(s) 672
AvaII GGWCC 1 cut(s) 551
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 2 cut(s) 62, 240
BbvI GCAGC 2 cut(s) 95, 631
BccI CCATC 2 cut(s) 134, 623
BclI TGATCA 2 cut(s) 154, 613
BcoDI GTCTC 4 cut(s) 125, 304, 402, 602
BfaI CTAG 3 cut(s) 20, 95, 195
BfmI CTRYAG 3 cut(s) 135, 546, 645
BisI GCNGC 2 cut(s) 84, 645
BlsI GCNGC 2 cut(s) 85, 646
Bme18I GGWCC 1 cut(s) 551
BmgT120I GGNCC 1 cut(s) 551
BmiI GGNNCC 1 cut(s) 6
BpiI GAAGAC 2 cut(s) 62, 240
Bpu14I TTCGAA 1 cut(s) 672
BpuEI CTTGAG 1 cut(s) 384
BsaHI GRCGYC 1 cut(s) 600
BsaJI CCNNGG 2 cut(s) 177, 603
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 177, 603
BseGI GGATG 1 cut(s) 535
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 1 cut(s) 585
BseXI GCAGC 2 cut(s) 95, 631
BsgI GTGCAG 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 4 cut(s) 125, 304, 402, 602
Bsp119I TTCGAA 1 cut(s) 672
Bsp143I GATC 2 cut(s) 154, 613
Bsp19I CCATGG 1 cut(s) 603
BspCNI CTCAG 1 cut(s) 586
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 2 cut(s) 139, 649
BspQI GCTCTTC 1 cut(s) 480
BspT104I TTCGAA 1 cut(s) 672
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 285
BssECI CCNNGG 2 cut(s) 177, 603
BssMI GATC 2 cut(s) 154, 613
BssNAI GTATAC 1 cut(s) 507
BssNI GRCGYC 1 cut(s) 600
BssT1I CCWWGG 1 cut(s) 603
Bst1107I GTATAC 1 cut(s) 507
Bst6I CTCTTC 1 cut(s) 480
BstACI GRCGYC 1 cut(s) 600
BstBI TTCGAA 1 cut(s) 672
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 594
BstDSI CCRYGG 2 cut(s) 177, 603
BstF5I GGATG 1 cut(s) 535
BstKTI GATC 2 cut(s) 157, 616
BstMAI GTCTC 4 cut(s) 125, 304, 402, 602
BstMBI GATC 2 cut(s) 154, 613
BstSFI CTRYAG 3 cut(s) 135, 546, 645
BstV1I GCAGC 2 cut(s) 95, 631
BstV2I GAAGAC 2 cut(s) 62, 240
BstZ17I GTATAC 1 cut(s) 507
BtgI CCRYGG 2 cut(s) 177, 603
BtsCI GGATG 1 cut(s) 535
BtsIMutI CAGTG 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 551
CseI GACGC 1 cut(s) 608
Csp6I GTAC 1 cut(s) 209
CviAII CATG 2 cut(s) 257, 604
CviJI RGCY 9 cut(s) 94, 107, 231, 265, 317, 331, 439, 473, 644
CviKI_1 RGCY 9 cut(s) 94, 107, 231, 265, 317, 331, 439, 473, 644
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 1 cut(s) 594
DpnI GATC 2 cut(s) 156, 615
DpnII GATC 2 cut(s) 154, 613
DrdI GACNNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 603
Eco47I GGWCC 1 cut(s) 551
Eco57I CTGAAG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 2 cut(s) 260, 607
FaiI YATR 8 cut(s) 30, 206, 258, 277, 347, 433, 507, 605
FatI CATG 2 cut(s) 256, 603
FbaI TGATCA 2 cut(s) 154, 613
FblI GTMKAC 2 cut(s) 367, 506
Fnu4HI GCNGC 2 cut(s) 84, 645
FokI GGATG 1 cut(s) 542
Fsp4HI GCNGC 2 cut(s) 84, 645
FspBI CTAG 3 cut(s) 20, 95, 195
GluI GCNGC 2 cut(s) 84, 645
HapII CCGG 1 cut(s) 104
HgaI GACGC 1 cut(s) 608
Hin1I GRCGYC 1 cut(s) 600
Hin1II CATG 2 cut(s) 260, 607
HinfI GANTC 7 cut(s) 10, 144, 310, 359, 404, 446, 590
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 644
Hpy166II GTNNAC 3 cut(s) 14, 368, 507
Hpy188I TCNGA 3 cut(s) 48, 270, 595
Hpy188III TCNNGA 4 cut(s) 158, 401, 450, 617
Hpy8I GTNNAC 3 cut(s) 14, 368, 507
HpyAV CCTTC 4 cut(s) 236, 578, 668, 677
HpyCH4V TGCA 6 cut(s) 83, 137, 260, 275, 290, 647
HpyF3I CTNAG 1 cut(s) 594
Hsp92I GRCGYC 1 cut(s) 600
Hsp92II CATG 2 cut(s) 260, 607
Ksp22I TGATCA 2 cut(s) 154, 613
Kzo9I GATC 2 cut(s) 154, 613
LguI GCTCTTC 1 cut(s) 480
LpnPI CCDG 7 cut(s) 117, 143, 303, 327, 463, 495, 534
Lsp1109I GCAGC 2 cut(s) 95, 631
MaeI CTAG 3 cut(s) 20, 95, 195
MalI GATC 2 cut(s) 156, 615
MboI GATC 2 cut(s) 154, 613
MboII GAAGA 7 cut(s) 61, 67, 240, 365, 399, 467, 638
MfeI CAATTG 1 cut(s) 305
MluCI AATT 4 cut(s) 126, 305, 555, 678
MlyI GAGTC 4 cut(s) 19, 153, 368, 455
MnlI CCTC 4 cut(s) 276, 559, 589, 628
MseI TTAA 2 cut(s) 111, 413
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 1 cut(s) 104
MunI CAATTG 1 cut(s) 305
NcoI CCATGG 1 cut(s) 603
NdeII GATC 2 cut(s) 154, 613
NlaIII CATG 2 cut(s) 260, 607
NlaIV GGNNCC 1 cut(s) 6
NspV TTCGAA 1 cut(s) 672
PciSI GCTCTTC 1 cut(s) 480
PfeI GAWTC 3 cut(s) 310, 404, 590
PkrI GCNGC 2 cut(s) 85, 646
PleI GAGTC 4 cut(s) 18, 152, 367, 454
PpsI GAGTC 4 cut(s) 18, 152, 367, 454
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 551
PstI CTGCAG 2 cut(s) 139, 649
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 480
SaqAI TTAA 2 cut(s) 111, 413
SatI GCNGC 2 cut(s) 84, 645
Sau3AI GATC 2 cut(s) 154, 613
Sau96I GGNCC 1 cut(s) 551
SchI GAGTC 4 cut(s) 19, 153, 368, 455
SetI ASST 8 cut(s) 96, 123, 214, 319, 333, 441, 475, 553
SfcI CTRYAG 3 cut(s) 135, 546, 645
SfuI TTCGAA 1 cut(s) 672
SinI GGWCC 1 cut(s) 551
SmlI CTYRAG 2 cut(s) 399, 697
SmoI CTYRAG 2 cut(s) 399, 697
Sse9I AATT 4 cut(s) 126, 305, 555, 678
SspMI CTAG 3 cut(s) 20, 95, 195
StyI CCWWGG 1 cut(s) 603
TaqI TCGA 1 cut(s) 672
TasI AATT 4 cut(s) 126, 305, 555, 678
TfiI GAWTC 3 cut(s) 310, 404, 590
Tru1I TTAA 2 cut(s) 111, 413
Tru9I TTAA 2 cut(s) 111, 413
TscAI CASTG 1 cut(s) 93
TseI GCWGC 2 cut(s) 83, 644
TspDTI ATGAA 5 cut(s) 39, 48, 68, 597, 639
TspRI CASTG 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 551
XmiI GTMKAC 2 cut(s) 367, 506
XspI CTAG 3 cut(s) 20, 95, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.