Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000668

Physical Location & Seq

Genomic Coordinates Forward (+)

55199416 .. 55201016

Gene Structure 1601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00323980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAAGGCTGCTTATGTGATTAACCTTAAGCCCACCTCAACTTTAGCTGCAGCTCAGCCTTCAAACCCAAACGTAGACCCAAACCCTGACCTAACTATCATCCCTGAAGTAGAGTCGCAGTCAGTCCCAACCATTCCTACTGATGAAGGGCAGGATAATACATTGCCTGTTAGGGCATGTGGGAAACGAAAGAAAGCAGTTGGGGGGGGGGGGAGGACATCGGGTCATGGAGAGACTGCAGATGGAGTCCTTGTTGATCAGGATTTGAACGAACCAACCATGGGAGAAAAACTTGCTAGTTTGAATATAGTACCTGATGATAGAGTAGAGAGCCAAAATAAAGAAGGCTCTTCTCTCCATGCAAAGCCTCCGAGTGCAGACTCTGTTCATATTTTGCTTAAGCAAGCACTACATGCTGATGACCGTGCCCTTCTATTCGAGTGCTTATACACCCAAGATGAGAAGGTCATTGCAAAGTCTGTCTCTCAATTGAATCCAGCTGGTGTTTTGAAGCTCTTACAATCTCTCATATCTCTTATTGAGTCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12

Protein Analysis

183

Amino Acids

19.45

Weight (kDa)

5.19

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15420 AT1G15420
fragaria_vesca	FvH4_3g30171 FvH4_3g44471 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44510 FvH4_7g12841
malus_domestica	MD12G1094900.v1.1 MD14G1090800.v1.1 MD15G1387900.v1.1 MD15G1388000.v1.1
prunus_persica	Prupe.6G012700_v2.0.a1
pyrus_communis	pycom15g34820
rosa_chinensis	RchiOBHm_Chr1g0331681 RchiOBHm_Chr5g0081171 RchiOBHm_Chr5g0081181 RchiOBHm_Chr5g0081211
rosa_laevigata	RLG00000030438 RLG00000030441 RLG00000030443 RLG00000030447 RLG00000036915 RLG00000036917 RLG00000036919
rosa_multiflora	Rmu_sc0005044.1_g000010 Rmu_sc0005044.1_g000012 Rmu_sc0007768.1_g000001 Rmu_sc0020106.1_g000001 Rmu_ssc0000432.1_g000071 Rmu_ssc0000432.1_g000072 Rmu_ssc0000432.1_g000074 Rmu_ssc0000432.1_g000076 Rmu_ssc0000432.1_g000077
rosa_roxburghii	Rroxscaffold_1G00002290 Rroxscaffold_4G00323980
rosa_rugosa	Rorug01G0031400 Rorug01G0031500 Rorug05G0473700 Rorug05G0473800 Rorug05G0473900 Rorug05G0474000 Rorug05G0474100 Rorug05G0474200 Rorug05G0474400 Rorug05G0474700
rosa_samantha	Rh1AG119200 Rh1BG040400 Rh1CG045400 Rh1CG114200 Rh1CG114300 Rh1CG221300 Rh1DG050000 Rh1DG124400 Rh1DG124600 Rh5AG526300 Rh5AG526500 Rh5BG550600 Rh5CG573500 Rh5DG560300 Rh5DG560700
rosa_wichuraiana	Rw1G009620 Rw1G009630 Rw5G048900 Rw5G048910 Rw5G048940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	281
AflII	CTTAAG	2 cut(s)	26, 398
AgsI	TTSAA	5 cut(s)	63, 268, 304, 493, 511
AhdI	GACNNNNNGTC	1 cut(s)	222
AluBI	AGCT	4 cut(s)	47, 53, 500, 514
AluI	AGCT	4 cut(s)	47, 53, 500, 514
Alw26I	GTCTC	2 cut(s)	227, 487
AlwNI	CAGNNNCTG	1 cut(s)	383
ApeKI	GCWGC	3 cut(s)	8, 47, 50
BaeGI	GKGCMC	1 cut(s)	430
BbvI	GCAGC	2 cut(s)	34, 62
BccI	CCATC	1 cut(s)	236
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	2 cut(s)	227, 487
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	2 cut(s)	48, 237
BfrI	CTTAAG	2 cut(s)	26, 398
BisI	GCNGC	3 cut(s)	9, 48, 51
BlpI	GCTNAGC	1 cut(s)	54
BlsI	GCNGC	3 cut(s)	10, 49, 52
BmeRI	GACNNNNNGTC	1 cut(s)	222
Bpu1102I	GCTNAGC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse3DI	GCAATG	2 cut(s)	161, 468
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	2 cut(s)	161, 468
BseMII	CTCAG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	2 cut(s)	34, 62
BsgI	GTGCAG	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	227, 487
BsmFI	GGGAC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp143I	GATC	1 cut(s)	256
Bsp1720I	GCTNAGC	1 cut(s)	54
Bsp19I	CCATGG	1 cut(s)	279
BspCNI	CTCAG	1 cut(s)	67
BspMAI	CTGCAG	2 cut(s)	52, 241
BspQI	GCTCTTC	1 cut(s)	355
BspTI	CTTAAG	2 cut(s)	26, 398
BsrDI	GCAATG	2 cut(s)	161, 468
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	425
Bst6I	CTCTTC	1 cut(s)	355
BstAFI	CTTAAG	2 cut(s)	26, 398
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	99
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	2 cut(s)	227, 487
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNSI	RCATGY	2 cut(s)	180, 416
BstSFI	CTRYAG	2 cut(s)	48, 237
BstSLI	GKGCMC	1 cut(s)	430
BstV1I	GCAGC	2 cut(s)	34, 62
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	405
CaiI	CAGNNNCTG	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	5 cut(s)	177, 227, 280, 359, 413
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
DriI	GACNNNNNGTC	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	355
Eam1105I	GACNNNNNGTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	5 cut(s)	180, 230, 283, 362, 416
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	5 cut(s)	176, 226, 279, 358, 412
FbaI	TGATCA	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	9, 48, 51
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	3 cut(s)	9, 48, 51
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	3 cut(s)	9, 48, 51
Hin1II	CATG	5 cut(s)	180, 230, 283, 362, 416
HinfI	GANTC	5 cut(s)	113, 246, 380, 493, 542
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	5 cut(s)	69, 140, 338, 440, 457
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	5 cut(s)	50, 239, 362, 377, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	5 cut(s)	180, 230, 283, 362, 416
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	1 cut(s)	256
LguI	GCTCTTC	1 cut(s)	355
LpnPI	CCDG	8 cut(s)	99, 117, 137, 180, 245, 327, 486, 510
Lsp1109I	GCAGC	2 cut(s)	34, 62
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	1 cut(s)	72
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	1 cut(s)	342
MfeI	CAATTG	1 cut(s)	488
MhlI	GDGCHC	1 cut(s)	430
MluCI	AATT	1 cut(s)	488
MlyI	GAGTC	4 cut(s)	122, 255, 374, 551
MnlI	CCTC	3 cut(s)	46, 207, 378
MseI	TTAA	3 cut(s)	21, 27, 399
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	500
MspCI	CTTAAG	2 cut(s)	26, 398
MunI	CAATTG	1 cut(s)	488
MwoI	GCNNNNNNNGC	1 cut(s)	413
NcoI	CCATGG	1 cut(s)	279
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	5 cut(s)	180, 230, 283, 362, 416
NspI	RCATGY	2 cut(s)	180, 416
PciSI	GCTCTTC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	493
PkrI	GCNGC	3 cut(s)	10, 49, 52
PleI	GAGTC	4 cut(s)	121, 254, 374, 550
PpsI	GAGTC	4 cut(s)	121, 254, 374, 550
PstI	CTGCAG	2 cut(s)	52, 241
PstNI	CAGNNNCTG	1 cut(s)	383
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	417
SapI	GCTCTTC	1 cut(s)	355
SaqAI	TTAA	3 cut(s)	21, 27, 399
SatI	GCNGC	3 cut(s)	9, 48, 51
Sau3AI	GATC	1 cut(s)	256
SchI	GAGTC	4 cut(s)	122, 255, 374, 551
SduI	GDGCHC	1 cut(s)	430
SfcI	CTRYAG	2 cut(s)	48, 237
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	2 cut(s)	26, 398
SmoI	CTYRAG	2 cut(s)	26, 398
Sse9I	AATT	1 cut(s)	488
SspMI	CTAG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	438
TasI	AATT	1 cut(s)	488
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	3 cut(s)	21, 27, 399
Tru9I	TTAA	3 cut(s)	21, 27, 399
TseI	GCWGC	3 cut(s)	8, 47, 50
TspDTI	ATGAA	3 cut(s)	17, 159, 377
Vha464I	CTTAAG	2 cut(s)	26, 398
XceI	RCATGY	2 cut(s)	180, 416
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.