Rorug05G0474200

Dip2/Utp12 Family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000668
Physical Location & Seq
Forward (+)
65172629 .. 65173225
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0474200.1

Sequence Viewer

Length: 597 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTATAAGCGGAGTAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTGTAGAGCAGGTTGAGAGGATCTATCTCCAGCTGAAATGGGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAAGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAATTCATCTGCACCTGCTTCTGCTTCTTCTGCTGGTGTGATGATTGCTGTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Utp12

Protein Analysis

198

Amino Acids

21.7

Weight (kDa)

9.3

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 88 1.1e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 78
AarI CACCTGC 1 cut(s) 358
Acc36I ACCTGC 2 cut(s) 160, 358
AccIII TCCGGA 1 cut(s) 585
AciI CCGC 3 cut(s) 82, 513, 592
AclWI GGATC 2 cut(s) 188, 427
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 2 cut(s) 217, 440
AleI CACNNNNGTG 1 cut(s) 522
AluBI AGCT 4 cut(s) 130, 193, 547, 572
AluI AGCT 4 cut(s) 130, 193, 547, 572
Alw21I GWGCWC 1 cut(s) 549
AlwI GGATC 2 cut(s) 188, 427
Ama87I CYCGRG 1 cut(s) 252
Aor13HI TCCGGA 1 cut(s) 585
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 444
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 332, 479
AvaI CYCGRG 1 cut(s) 252
AvaII GGWCC 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 297
BanII GRGCYC 2 cut(s) 253, 549
BbsI GAAGAC 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 26, 391, 497
BcnI CCSGG 1 cut(s) 55
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 2 cut(s) 160, 358
BisI GCNGC 2 cut(s) 51, 592
BlpI GCTNAGC 1 cut(s) 548
BlsI GCNGC 2 cut(s) 52, 593
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 3 cut(s) 6, 155, 590
BmrFI CCNGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 497
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 548
BpuEI CTTGAG 2 cut(s) 107, 563
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 585
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse8I GATNNNNATC 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 585
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 289
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 464
BseMII CTCAG 1 cut(s) 562
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 549
BsiHKCI CYCGRG 1 cut(s) 252
BsiSI CCGG 2 cut(s) 54, 586
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 464
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 252
Bsp1286I GDGCHC 3 cut(s) 253, 297, 549
Bsp13I TCCGGA 1 cut(s) 585
Bsp143I GATC 5 cut(s) 106, 180, 207, 305, 419
Bsp1720I GCTNAGC 1 cut(s) 548
BspACI CCGC 3 cut(s) 82, 513, 592
BspCNI CTCAG 1 cut(s) 561
BspEI TCCGGA 1 cut(s) 585
BspLI GGNNCC 3 cut(s) 6, 155, 590
BspMI ACCTGC 2 cut(s) 160, 358
BspPI GGATC 2 cut(s) 188, 427
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 5 cut(s) 106, 180, 207, 305, 419
Bst4CI ACNGT 2 cut(s) 163, 521
BstDEI CTNAG 1 cut(s) 548
BstF5I GGATG 2 cut(s) 37, 289
BstKTI GATC 5 cut(s) 109, 183, 210, 308, 422
BstMBI GATC 5 cut(s) 106, 180, 207, 305, 419
BstMWI GCNNNNNNNGC 3 cut(s) 79, 365, 558
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 2 cut(s) 180, 419
BstYI RGATCY 2 cut(s) 180, 419
BtsCI GGATG 2 cut(s) 37, 289
BveI ACCTGC 2 cut(s) 160, 358
Cfr13I GGNCC 1 cut(s) 153
CviAII CATG 7 cut(s) 70, 290, 298, 430, 460, 464, 487
DdeI CTNAG 1 cut(s) 548
DpnI GATC 5 cut(s) 108, 182, 209, 307, 421
DpnII GATC 5 cut(s) 106, 180, 207, 305, 419
Ecl136II GAGCTC 1 cut(s) 547
Eco24I GRGCYC 2 cut(s) 253, 549
Eco47I GGWCC 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 547
Eco88I CYCGRG 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 547
EcoO109I RGGNCCY 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 465
EcoT38I GRGCYC 2 cut(s) 253, 549
FaeI CATG 7 cut(s) 73, 293, 301, 433, 463, 467, 490
FaqI GGGAC 1 cut(s) 139
FatI CATG 7 cut(s) 69, 289, 297, 429, 459, 463, 486
Fnu4HI GCNGC 2 cut(s) 51, 592
FokI GGATG 2 cut(s) 44, 296
FriOI GRGCYC 2 cut(s) 253, 549
Fsp4HI GCNGC 2 cut(s) 51, 592
GluI GCNGC 2 cut(s) 51, 592
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 2 cut(s) 54, 586
Hin1II CATG 7 cut(s) 73, 293, 301, 433, 463, 467, 490
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 2 cut(s) 94, 117
HpaI GTTAAC 1 cut(s) 388
HpaII CCGG 2 cut(s) 54, 586
HphI GGTGA 2 cut(s) 332, 479
Hpy166II GTNNAC 4 cut(s) 93, 241, 276, 388
Hpy188I TCNGA 3 cut(s) 111, 283, 502
Hpy188III TCNNGA 4 cut(s) 217, 238, 254, 586
Hpy8I GTNNAC 4 cut(s) 93, 241, 276, 388
HpyAV CCTTC 1 cut(s) 455
HpyCH4III ACNGT 2 cut(s) 163, 521
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 301, 347, 463
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 365, 558
HpyF3I CTNAG 1 cut(s) 548
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 7 cut(s) 73, 293, 301, 433, 463, 467, 490
Kpn2I TCCGGA 1 cut(s) 585
KspAI GTTAAC 1 cut(s) 388
Kzo9I GATC 5 cut(s) 106, 180, 207, 305, 419
LmnI GCTCC 2 cut(s) 127, 588
LpnPI CCDG 9 cut(s) 29, 67, 155, 203, 294, 354, 363, 558, 571
Lsp1109I GCAGC 1 cut(s) 62
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 2 cut(s) 331, 515
MalI GATC 5 cut(s) 108, 182, 209, 307, 421
MboI GATC 5 cut(s) 106, 180, 207, 305, 419
MboII GAAGA 4 cut(s) 277, 280, 354, 502
MflI RGATCY 2 cut(s) 180, 419
MhlI GDGCHC 3 cut(s) 253, 297, 549
MluCI AATT 1 cut(s) 337
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 8 cut(s) 22, 29, 131, 171, 459, 463, 500, 556
Mph1103I ATGCAT 1 cut(s) 465
MroI TCCGGA 1 cut(s) 585
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 1 cut(s) 387
MslI CAYNNNNRTG 1 cut(s) 522
MspA1I CMGCKG 2 cut(s) 193, 594
MspI CCGG 2 cut(s) 54, 586
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 3 cut(s) 79, 365, 558
NciI CCSGG 1 cut(s) 55
NdeII GATC 5 cut(s) 106, 180, 207, 305, 419
NlaIII CATG 7 cut(s) 73, 293, 301, 433, 463, 467, 490
NlaIV GGNNCC 3 cut(s) 6, 155, 590
NmuCI GTSAC 1 cut(s) 515
NsiI ATGCAT 1 cut(s) 465
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 522
PaqCI CACCTGC 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 52, 593
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 153
PsiI TTATAA 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 549
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 3 cut(s) 6, 155, 590
PspPI GGNCC 1 cut(s) 153
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 2 cut(s) 180, 419
PvuII CAGCTG 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 522
SacI GAGCTC 1 cut(s) 549
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 2 cut(s) 51, 592
Sau3AI GATC 5 cut(s) 106, 180, 207, 305, 419
Sau96I GGNCC 1 cut(s) 153
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 3 cut(s) 253, 297, 549
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 522
SmlI CTYRAG 2 cut(s) 122, 542
SmoI CTYRAG 2 cut(s) 122, 542
Sse9I AATT 1 cut(s) 337
SsiI CCGC 3 cut(s) 82, 513, 592
SstI GAGCTC 1 cut(s) 549
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 163, 521
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 210
TasI AATT 1 cut(s) 337
TauI GCSGC 1 cut(s) 594
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TseFI GTSAC 1 cut(s) 515
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 4 cut(s) 278, 330, 440, 503
VpaK11BI GGWCC 1 cut(s) 153
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 444
Zsp2I ATGCAT 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.