Rh1CG221300

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000668
Physical Location & Seq
Forward (+)
47151557 .. 47153145
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG221300.1

Sequence Viewer

Length: 369 bp
ATGTTATACGATGATATAATAGGTTGGGAGTTGGAAGTGGTTGGTTCAGCCGGCAAATTATGTGTGAAACACTCGAGGGTTTATCCAGTGGGCCAAGATATTGTTCCAGATGTGCTTGTGATCTCAGCTTTTGACCCCAACACTGATGAGGATATCTTCTATGTATGTAATATAAATATTGATGAGGAAGTGATGCGGGCATTCCTTGCCATGTACAACACTCGTACCAGAGCGTGGTCAAACATAGCTATTCAGGACGACCCAAATGATAAGTATATTGCCCGTCATCCTCGCCTCTTCCAGTTGGTGTTCCCATGGTGGCCAACACCAGTTCCTAGACTACCACTGCATCAACAGACCCATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

122

Amino Acids

14.12

Weight (kDa)

4.97

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 234
AciI CCGC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 320
AfaI GTAC 2 cut(s) 215, 226
AfiI CCNNNNNNNGG 1 cut(s) 234
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 2 cut(s) 128, 248
AluI AGCT 2 cut(s) 128, 248
Ama87I CYCGRG 1 cut(s) 73
AoxI GGCC 2 cut(s) 91, 320
AspS9I GGNCC 1 cut(s) 91
AvaI CYCGRG 1 cut(s) 73
BaeI ACNNNNGTAYC 2 cut(s) 208, 241
BalI TGGCCA 1 cut(s) 322
BfaI CTAG 1 cut(s) 336
BmeT110I CYCGRG 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 91
BmsI GCATC 2 cut(s) 183, 358
BsaJI CCNNGG 2 cut(s) 314, 361
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 3 cut(s) 86, 301, 329
BseDI CCNNGG 2 cut(s) 314, 361
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 3 cut(s) 86, 301, 329
BshFI GGCC 2 cut(s) 93, 322
BsiHKCI CYCGRG 1 cut(s) 73
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 234
BsmI GAATGC 1 cut(s) 200
BsnI GGCC 2 cut(s) 93, 322
BsoBI CYCGRG 1 cut(s) 73
Bsp1407I TGTACA 1 cut(s) 213
Bsp143I GATC 1 cut(s) 120
Bsp19I CCATGG 2 cut(s) 314, 361
BspACI CCGC 1 cut(s) 196
BspANI GGCC 2 cut(s) 93, 322
BspCNI CTCAG 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 50
BsrGI TGTACA 1 cut(s) 213
BsrI ACTGG 3 cut(s) 86, 301, 329
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 2 cut(s) 314, 361
BssMI GATC 1 cut(s) 120
BssT1I CCWWGG 2 cut(s) 314, 361
Bst6I CTCTTC 1 cut(s) 302
BstAPI GCANNNNNTGC 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 213
BstC8I GCNNGC 2 cut(s) 52, 198
BstDEI CTNAG 1 cut(s) 124
BstDSI CCRYGG 2 cut(s) 314, 361
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 1 cut(s) 206
BsuRI GGCC 2 cut(s) 93, 322
BtgI CCRYGG 2 cut(s) 314, 361
BtsCI GGATG 1 cut(s) 286
BtsI GCAGTG 1 cut(s) 344
BtsIMutI CAGTG 3 cut(s) 93, 141, 344
Cac8I GCNNGC 2 cut(s) 52, 198
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 91
Csp6I GTAC 2 cut(s) 214, 225
CviAII CATG 3 cut(s) 211, 315, 362
CviJI RGCY 5 cut(s) 50, 93, 128, 248, 322
CviKI_1 RGCY 5 cut(s) 50, 93, 128, 248, 322
CviQI GTAC 2 cut(s) 214, 225
DdeI CTNAG 1 cut(s) 124
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
EaeI YGGCCR 1 cut(s) 320
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 314, 361
Eco32I GATATC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 73
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 2 cut(s) 314, 361
ErhI CCWWGG 2 cut(s) 314, 361
FaeI CATG 3 cut(s) 214, 318, 365
FatI CATG 3 cut(s) 210, 314, 361
FauI CCCGC 1 cut(s) 189
FokI GGATG 1 cut(s) 273
FspBI CTAG 1 cut(s) 336
HaeIII GGCC 2 cut(s) 93, 322
HapII CCGG 1 cut(s) 51
Hin1II CATG 3 cut(s) 214, 318, 365
HpaII CCGG 1 cut(s) 51
Hpy188III TCNNGA 2 cut(s) 107, 254
HpyCH4V TGCA 1 cut(s) 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 124
Hsp92II CATG 3 cut(s) 214, 318, 365
KroI GCCGGC 1 cut(s) 50
KroNI GCCGGC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 120
LpnPI CCDG 7 cut(s) 64, 99, 120, 239, 241, 314, 342
LweI GCATC 2 cut(s) 183, 358
MaeI CTAG 1 cut(s) 336
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 2 cut(s) 148, 289
MlsI TGGCCA 1 cut(s) 322
MluCI AATT 1 cut(s) 56
MluNI TGGCCA 1 cut(s) 322
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 5 cut(s) 69, 142, 178, 300, 305
Mox20I TGGCCA 1 cut(s) 322
MroNI GCCGGC 1 cut(s) 50
MscI TGGCCA 1 cut(s) 322
Msp20I TGGCCA 1 cut(s) 322
MspI CCGG 1 cut(s) 51
Mva1269I GAATGC 1 cut(s) 200
MwoI GCNNNNNNNGC 1 cut(s) 206
NaeI GCCGGC 1 cut(s) 52
NcoI CCATGG 2 cut(s) 314, 361
NdeII GATC 1 cut(s) 120
NgoMIV GCCGGC 1 cut(s) 50
NlaIII CATG 3 cut(s) 214, 318, 365
PaeR7I CTCGAG 1 cut(s) 73
PctI GAATGC 1 cut(s) 200
PdiI GCCGGC 1 cut(s) 52
PflMI CCANNNNNTGG 1 cut(s) 234
PspPI GGNCC 1 cut(s) 91
PspXI VCTCGAGB 1 cut(s) 73
RsaI GTAC 2 cut(s) 215, 226
RsaNI GTAC 2 cut(s) 214, 225
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 91
SetI ASST 3 cut(s) 25, 130, 250
SfaNI GCATC 2 cut(s) 183, 358
Sfr274I CTCGAG 1 cut(s) 73
SlaI CTCGAG 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
Sse9I AATT 1 cut(s) 56
SsiI CCGC 1 cut(s) 196
SspI AATATT 1 cut(s) 178
SspMI CTAG 1 cut(s) 336
StyI CCWWGG 2 cut(s) 314, 361
TaqI TCGA 1 cut(s) 74
TasI AATT 1 cut(s) 56
TatI WGTACW 1 cut(s) 213
TscAI CASTG 3 cut(s) 93, 148, 351
TspRI CASTG 3 cut(s) 93, 148, 351
Van91I CCANNNNNTGG 1 cut(s) 234
XhoI CTCGAG 1 cut(s) 73
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.