Rorug05G0473700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000668
Physical Location & Seq
Reverse (-)
65100393 .. 65101211
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0473700.1

Sequence Viewer

Length: 819 bp
ATGTTGGATAAGGTACTGCTCTTTCATTATCGAAACCCAAAGTCTGATTCATGTTCTTCTTTTCAGCTTAAAGGGGGAAGGGGACATGCAGGATCCAAAGGCAAAAGAACAGTCAAGAAAAAAAAGGATGACAACAGTGAAGTAGTGGATTTTCAGTCACTGCTAACTCAGTGTGCAAAGGCTGTTGCAAGCTATGACAGAAGGACTGCAAATGAACAACTGAAAAAGATAAGGCAGCACTCATCTTCCTACGGTGATGGAACCCAAAGAGTAGCTCATTACTTAGCCAATGGCCTTGAAGAACGCTTGGCTGCTGCAGTTCCTTTGTTCAATCCTCTTTGCCTTAATAAGATGTCAGCTGCTGATATCTTAAAAGCTTACCAGACATATATCAAAGCATGCCCCTTCAAGTTGATGTCAAACATCTATGCTAACAAAACTATCATCAAACTAACAGAGAAAGCAACAAGGCTTCACATAATTGATTTTGGTATTCTCTATGGCTACCAATGGCCTGGCCTTATCCAAAGTCTTGCAAAAAGACCCTCTGGACCTCCCATGCTTCGCATTACTGGTATTGAATTTCCACAATCAGGATTTCGACCTTCAGAGAGTCTTGAAGAGACAGGGCACCGCCTAGCGAAATATTGGAAGAGATTCAATGTCCCATTTGAGTACAACTTCATAGCACAGGATTGGGAAACCATTCGATATCAAGATATCAAACTTGACAGAGATGAGTTGACTGTAGTGAACTGCTTGTGCAGATTAAGGAACTTACCTGAAGAAACAGAGATGAGGAGTCCATGGACTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

272

Amino Acids

31.15

Weight (kDa)

9.5

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 52 - 265 7.4e-66 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 630
AccB7I CCANNNNNTGG 1 cut(s) 812
AciI CCGC 1 cut(s) 634
AclWI GGATC 2 cut(s) 87, 100
AcsI RAATTY 1 cut(s) 581
AcuI CTGAAG 2 cut(s) 591, 804
AfaI GTAC 2 cut(s) 15, 677
AfiI CCNNNNNNNGG 2 cut(s) 593, 812
AgsI TTSAA 6 cut(s) 299, 331, 409, 581, 620, 661
AjnI CCWGG 1 cut(s) 514
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AluBI AGCT 5 cut(s) 67, 192, 275, 359, 377
AluI AGCT 5 cut(s) 67, 192, 275, 359, 377
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 2 cut(s) 87, 100
AlwNI CAGNNNCTG 2 cut(s) 160, 362
AoxI GGCC 3 cut(s) 292, 512, 517
ApeKI GCWGC 4 cut(s) 235, 311, 314, 359
ApoI RAATTY 1 cut(s) 581
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
Asp700I GAANNNNTTC 2 cut(s) 656, 705
AspS9I GGNCC 1 cut(s) 551
AsuHPI GGTGA 1 cut(s) 266
AvaII GGWCC 1 cut(s) 551
BaeGI GKGCMC 1 cut(s) 633
BamHI GGATCC 1 cut(s) 92
BanI GGYRCC 1 cut(s) 630
BbvI GCAGC 4 cut(s) 247, 298, 301, 346
BccI CCATC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 516
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 1 cut(s) 638
BfmI CTRYAG 2 cut(s) 315, 747
BisI GCNGC 4 cut(s) 236, 312, 315, 360
BlsI GCNGC 4 cut(s) 237, 313, 316, 361
Bme1390I CCNGG 1 cut(s) 516
Bme18I GGWCC 1 cut(s) 551
BmgT120I GGNCC 1 cut(s) 551
BmiI GGNNCC 3 cut(s) 94, 262, 632
BmrFI CCNGG 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 806
Bsc4I CCNNNNNNNGG 2 cut(s) 593, 812
Bse1I ACTGG 2 cut(s) 577, 817
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 1 cut(s) 806
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 593, 812
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 2 cut(s) 577, 817
BseRI GAGGAG 1 cut(s) 814
BseSI GKGCMC 1 cut(s) 633
BseXI GCAGC 4 cut(s) 247, 298, 301, 346
BsgI GTGCAG 1 cut(s) 784
BshFI GGCC 3 cut(s) 294, 514, 519
BshNI GGYRCC 1 cut(s) 630
BslFI GGGAC 2 cut(s) 96, 650
BslI CCNNNNNNNGG 2 cut(s) 593, 812
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 2 cut(s) 96, 650
BsnI GGCC 3 cut(s) 294, 514, 519
Bsp1286I GDGCHC 1 cut(s) 633
Bsp143I GATC 1 cut(s) 92
Bsp19I CCATGG 1 cut(s) 806
BspACI CCGC 1 cut(s) 634
BspANI GGCC 3 cut(s) 294, 514, 519
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 3 cut(s) 94, 262, 632
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 2 cut(s) 87, 100
BspT107I GGYRCC 1 cut(s) 630
BsrI ACTGG 2 cut(s) 577, 817
BssECI CCNNGG 1 cut(s) 806
BssMI GATC 1 cut(s) 92
BssT1I CCWWGG 1 cut(s) 806
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 4 cut(s) 112, 137, 254, 748
Bst6I CTCTTC 2 cut(s) 615, 647
BstC8I GCNNGC 2 cut(s) 190, 400
BstDEI CTNAG 2 cut(s) 168, 283
BstDSI CCRYGG 1 cut(s) 806
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 1 cut(s) 95
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 516
BstNSI RCATGY 2 cut(s) 89, 402
BstSCI CCNGG 1 cut(s) 514
BstSFI CTRYAG 2 cut(s) 315, 747
BstSLI GKGCMC 1 cut(s) 633
BstV1I GCAGC 4 cut(s) 247, 298, 301, 346
BstX2I RGATCY 1 cut(s) 92
BstXI CCANNNNNNTGG 1 cut(s) 515
BstYI RGATCY 1 cut(s) 92
BsuRI GGCC 3 cut(s) 294, 514, 519
BtgI CCRYGG 1 cut(s) 806
BtsCI GGATG 1 cut(s) 133
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 3 cut(s) 142, 158, 176
Cac8I GCNNGC 2 cut(s) 190, 400
CaiI CAGNNNCTG 2 cut(s) 160, 362
Cfr13I GGNCC 1 cut(s) 551
Csp6I GTAC 2 cut(s) 14, 676
CviAII CATG 5 cut(s) 51, 86, 399, 559, 807
CviQI GTAC 2 cut(s) 14, 676
DdeI CTNAG 2 cut(s) 168, 283
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 615, 647
EarI CTCTTC 2 cut(s) 615, 647
Eco130I CCWWGG 1 cut(s) 806
Eco32I GATATC 3 cut(s) 367, 713, 721
Eco47I GGWCC 1 cut(s) 551
Eco57I CTGAAG 2 cut(s) 591, 804
EcoRII CCWGG 1 cut(s) 514
EcoRV GATATC 3 cut(s) 367, 713, 721
EcoT14I CCWWGG 1 cut(s) 806
ErhI CCWWGG 1 cut(s) 806
FaeI CATG 5 cut(s) 54, 89, 402, 562, 810
FaqI GGGAC 2 cut(s) 96, 650
FatI CATG 5 cut(s) 50, 85, 398, 558, 806
Fnu4HI GCNGC 4 cut(s) 236, 312, 315, 360
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 4 cut(s) 236, 312, 315, 360
FspBI CTAG 1 cut(s) 638
GluI GCNGC 4 cut(s) 236, 312, 315, 360
HaeIII GGCC 3 cut(s) 294, 514, 519
Hin1II CATG 5 cut(s) 54, 89, 402, 562, 810
HincII GTYRAC 1 cut(s) 744
HindII GTYRAC 1 cut(s) 744
HindIII AAGCTT 1 cut(s) 375
HinfI GANTC 4 cut(s) 47, 613, 657, 802
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 2 cut(s) 744, 754
Hpy188I TCNGA 2 cut(s) 46, 610
Hpy188III TCNNGA 5 cut(s) 115, 549, 594, 617, 716
Hpy8I GTNNAC 2 cut(s) 744, 754
HpyAV CCTTC 4 cut(s) 72, 195, 415, 615
HpyCH4III ACNGT 4 cut(s) 112, 137, 254, 748
HpyCH4V TGCA 7 cut(s) 89, 176, 188, 209, 317, 536, 765
HpyF3I CTNAG 2 cut(s) 168, 283
Hsp92II CATG 5 cut(s) 54, 89, 402, 562, 810
Kzo9I GATC 1 cut(s) 92
Lsp1109I GCAGC 4 cut(s) 247, 298, 301, 346
MaeI CTAG 1 cut(s) 638
MaeIII GTNAC 1 cut(s) 156
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 6 cut(s) 48, 237, 311, 632, 664, 797
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 633
MluCI AATT 2 cut(s) 480, 581
MlyI GAGTC 2 cut(s) 622, 811
MnlI CCTC 4 cut(s) 345, 556, 564, 792
MroXI GAANNNNTTC 2 cut(s) 656, 705
MseI TTAA 5 cut(s) 69, 345, 371, 770, 817
MspA1I CMGCKG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 516
MvaI CCWGG 1 cut(s) 516
NcoI CCATGG 1 cut(s) 806
NdeII GATC 1 cut(s) 92
NlaIII CATG 5 cut(s) 54, 89, 402, 562, 810
NlaIV GGNNCC 3 cut(s) 94, 262, 632
NmuCI GTSAC 1 cut(s) 156
NspI RCATGY 2 cut(s) 89, 402
PaeI GCATGC 1 cut(s) 402
PdmI GAANNNNTTC 2 cut(s) 656, 705
PfeI GAWTC 2 cut(s) 47, 657
PflMI CCANNNNNTGG 1 cut(s) 812
PkrI GCNGC 4 cut(s) 237, 313, 316, 361
PleI GAGTC 2 cut(s) 621, 810
PpsI GAGTC 2 cut(s) 621, 810
Psp6I CCWGG 1 cut(s) 514
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 3 cut(s) 94, 262, 632
PspPI GGNCC 1 cut(s) 551
PstI CTGCAG 1 cut(s) 319
PstNI CAGNNNCTG 2 cut(s) 160, 362
PsuI RGATCY 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 2 cut(s) 15, 677
RsaNI GTAC 2 cut(s) 14, 676
SaqAI TTAA 5 cut(s) 69, 345, 371, 770, 817
SatI GCNGC 4 cut(s) 236, 312, 315, 360
Sau3AI GATC 1 cut(s) 92
Sau96I GGNCC 1 cut(s) 551
SchI GAGTC 2 cut(s) 622, 811
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 1 cut(s) 633
SetI ASST 9 cut(s) 15, 69, 194, 277, 361, 379, 556, 607, 784
SfcI CTRYAG 2 cut(s) 315, 747
SinI GGWCC 1 cut(s) 551
SphI GCATGC 1 cut(s) 402
Sse9I AATT 2 cut(s) 480, 581
SsiI CCGC 1 cut(s) 634
SspI AATATT 1 cut(s) 647
SspMI CTAG 1 cut(s) 638
StyD4I CCNGG 1 cut(s) 514
StyI CCWWGG 1 cut(s) 806
TaaI ACNGT 4 cut(s) 112, 137, 254, 748
TaqI TCGA 3 cut(s) 31, 601, 709
TasI AATT 2 cut(s) 480, 581
TatI WGTACW 1 cut(s) 675
TfiI GAWTC 2 cut(s) 47, 657
Tru1I TTAA 5 cut(s) 69, 345, 371, 770, 817
Tru9I TTAA 5 cut(s) 69, 345, 371, 770, 817
TscAI CASTG 3 cut(s) 142, 165, 176
TseFI GTSAC 1 cut(s) 156
TseI GCWGC 4 cut(s) 235, 311, 314, 359
Tsp45I GTSAC 1 cut(s) 156
TspDTI ATGAA 4 cut(s) 14, 39, 228, 673
TspRI CASTG 3 cut(s) 142, 165, 176
Van91I CCANNNNNTGG 1 cut(s) 812
VpaK11BI GGWCC 1 cut(s) 551
XapI RAATTY 1 cut(s) 581
XceI RCATGY 2 cut(s) 89, 402
XmnI GAANNNNTTC 2 cut(s) 656, 705
XspI CTAG 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.