Rw1G009630

Dip2/Utp12 Family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000668
Physical Location & Seq
Forward (+)
21118889 .. 21120807
1919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009630.1

Sequence Viewer

Length: 822 bp
ATGAAGGGAAAAGAGGCTGCAAGAGGAAATCAGAAGATGAAGACTAAAAAGTCAAGTAAGAAGCGTGCAGCACTGGAGCTAGATACTCCGGCTATTAAAGACAAGGTTGAAATTGGTCATGGAGAGACTGCAGATGGAGTCCTTGTTGATCAGGATTTGAACGAACCAACCATGGGAGAAAAACTTGCTAGTTTGAATATAGTACCTGATGATAGAGTGGCGAGCCAAAATAAAGAAGGCTCTTCTCTCCATGCAAAGCCTCCGAGTGCAGACTCTGTTCATATTTTGCTCAAGCAAGCACTACATGCTGATGACCATGCCCTTCTATTCGAGTGCTTATACACCCAAGATGAGAAGGTCATTGCAAAGTCTGTCTCTCAATTGAATCCAGCTGGTGTTTTGAAGCTCTTACAATCTCTCATATCTCTTATTGAGTCAAGGGGTGCAATTTTGGCGTGTGCACTTCCATGGCTGAGAAGTCTACTTCTTCAACACGCAAGTGGGATAGTGTCTCAAGAATCTTCTTTAAGTGCCTTGAACTCTTTATATCAGCTCATTGAGTCCAGAGTTTCCACTTTTCAGTCAGCTCTTCAACTATCAAGTGTTTTAGACTTGCTGTATACAGGGGTTGTTGATGATTTGGATGATGAGAATGGCACTACAGGTCCAGTTATTTACGAGGACAAAGATAGTGATGAAGAGGAATCTGAGGACGCCATGGAGACTGATCAAGACGATGAAGATGGTGAGGATTTGGAAGCAGAACTTGGTGGTGTTAGCGACTTCGAAGGAATTGAAGGACTTGATGACTTGAGCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Utp12

Protein Analysis

273

Amino Acids

29.46

Weight (kDa)

4.35

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Utp12 PF04003 105 - 206 7.1e-17 Dip2/Utp12 Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 49
AccI GTMKAC 2 cut(s) 481, 620
AcyI GRCGYC 1 cut(s) 714
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 9 cut(s) 110, 160, 196, 385, 403, 491, 538, 593, 797
AjuI GAANNNNNNNTTGG 2 cut(s) 750, 782
AleI CACNNNNGTG 1 cut(s) 498
AluBI AGCT 5 cut(s) 79, 392, 406, 553, 587
AluI AGCT 5 cut(s) 79, 392, 406, 553, 587
Alw21I GWGCWC 1 cut(s) 463
Alw26I GTCTC 4 cut(s) 119, 379, 516, 716
Alw44I GTGCAC 1 cut(s) 459
AlwNI CAGNNNCTG 1 cut(s) 275
ApaLI GTGCAC 1 cut(s) 459
ApeKI GCWGC 2 cut(s) 17, 68
AspS9I GGNCC 1 cut(s) 665
AsuHPI GGTGA 1 cut(s) 758
AsuII TTCGAA 1 cut(s) 786
AvaII GGWCC 1 cut(s) 665
BaeGI GKGCMC 1 cut(s) 463
BbsI GAAGAC 1 cut(s) 47
Bbv12I GWGCWC 1 cut(s) 463
BbvI GCAGC 2 cut(s) 4, 80
BccI CCATC 2 cut(s) 128, 737
BclI TGATCA 2 cut(s) 148, 727
BcoDI GTCTC 4 cut(s) 119, 379, 516, 716
BfaI CTAG 2 cut(s) 80, 189
BfmI CTRYAG 2 cut(s) 129, 660
BisI GCNGC 2 cut(s) 18, 69
BlsI GCNGC 2 cut(s) 19, 70
Bme18I GGWCC 1 cut(s) 665
BmgT120I GGNCC 1 cut(s) 665
BpiI GAAGAC 1 cut(s) 47
BpmI CTGGAG 1 cut(s) 95
Bpu14I TTCGAA 1 cut(s) 786
BpuEI CTTGAG 2 cut(s) 275, 498
BsaHI GRCGYC 1 cut(s) 714
BsaJI CCNNGG 3 cut(s) 171, 467, 717
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse1I ACTGG 2 cut(s) 78, 668
Bse3DI GCAATG 1 cut(s) 360
BseDI CCNNGG 3 cut(s) 171, 467, 717
BseGI GGATG 1 cut(s) 649
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 2 cut(s) 464, 699
BseNI ACTGG 2 cut(s) 78, 668
BseSI GKGCMC 1 cut(s) 463
BseXI GCAGC 2 cut(s) 4, 80
BsgI GTGCAG 2 cut(s) 87, 288
BsiHKAI GWGCWC 1 cut(s) 463
BsiSI CCGG 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 4 cut(s) 119, 379, 516, 716
Bsp119I TTCGAA 1 cut(s) 786
Bsp1286I GDGCHC 1 cut(s) 463
Bsp143I GATC 2 cut(s) 148, 727
Bsp19I CCATGG 3 cut(s) 171, 467, 717
BspCNI CTCAG 2 cut(s) 465, 700
BspMAI CTGCAG 1 cut(s) 133
BspQI GCTCTTC 2 cut(s) 247, 594
BspT104I TTCGAA 1 cut(s) 786
BsrDI GCAATG 1 cut(s) 360
BsrI ACTGG 2 cut(s) 78, 668
BssECI CCNNGG 3 cut(s) 171, 467, 717
BssMI GATC 2 cut(s) 148, 727
BssNAI GTATAC 1 cut(s) 621
BssNI GRCGYC 1 cut(s) 714
BssT1I CCWWGG 3 cut(s) 171, 467, 717
Bst1107I GTATAC 1 cut(s) 621
Bst6I CTCTTC 3 cut(s) 247, 594, 693
BstACI GRCGYC 1 cut(s) 714
BstAPI GCANNNNNTGC 1 cut(s) 305
BstBI TTCGAA 1 cut(s) 786
BstC8I GCNNGC 3 cut(s) 66, 223, 297
BstDEI CTNAG 2 cut(s) 473, 708
BstDSI CCRYGG 3 cut(s) 171, 467, 717
BstF5I GGATG 1 cut(s) 649
BstKTI GATC 2 cut(s) 151, 730
BstMAI GTCTC 4 cut(s) 119, 379, 516, 716
BstMBI GATC 2 cut(s) 148, 727
BstMWI GCNNNNNNNGC 2 cut(s) 305, 452
BstNSI RCATGY 1 cut(s) 308
BstSFI CTRYAG 2 cut(s) 129, 660
BstSLI GKGCMC 1 cut(s) 463
BstV1I GCAGC 2 cut(s) 4, 80
BstV2I GAAGAC 1 cut(s) 47
BstZ17I GTATAC 1 cut(s) 621
BtgI CCRYGG 3 cut(s) 171, 467, 717
BtsCI GGATG 1 cut(s) 649
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 3 cut(s) 66, 223, 297
CaiI CAGNNNCTG 1 cut(s) 275
Cfr13I GGNCC 1 cut(s) 665
CseI GACGC 1 cut(s) 722
Csp6I GTAC 1 cut(s) 203
CviAII CATG 7 cut(s) 119, 172, 251, 305, 317, 468, 718
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 2 cut(s) 473, 708
DpnI GATC 2 cut(s) 150, 729
DpnII GATC 2 cut(s) 148, 727
DrdI GACNNNNNNGTC 1 cut(s) 49
DseDI GACNNNNNNGTC 1 cut(s) 49
Eam1104I CTCTTC 3 cut(s) 247, 594, 693
EarI CTCTTC 3 cut(s) 247, 594, 693
Eco130I CCWWGG 3 cut(s) 171, 467, 717
Eco47I GGWCC 1 cut(s) 665
EcoT14I CCWWGG 3 cut(s) 171, 467, 717
ErhI CCWWGG 3 cut(s) 171, 467, 717
FaeI CATG 7 cut(s) 122, 175, 254, 308, 320, 471, 721
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FatI CATG 7 cut(s) 118, 171, 250, 304, 316, 467, 717
FbaI TGATCA 2 cut(s) 148, 727
FblI GTMKAC 2 cut(s) 481, 620
Fnu4HI GCNGC 2 cut(s) 18, 69
FokI GGATG 1 cut(s) 656
Fsp4HI GCNGC 2 cut(s) 18, 69
FspBI CTAG 2 cut(s) 80, 189
GluI GCNGC 2 cut(s) 18, 69
GsuI CTGGAG 1 cut(s) 95
HapII CCGG 1 cut(s) 89
HgaI GACGC 1 cut(s) 722
Hin1I GRCGYC 1 cut(s) 714
Hin1II CATG 7 cut(s) 122, 175, 254, 308, 320, 471, 721
HinfI GANTC 7 cut(s) 138, 272, 385, 434, 518, 560, 704
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 758
Hpy166II GTNNAC 3 cut(s) 461, 482, 621
Hpy188I TCNGA 3 cut(s) 33, 264, 709
Hpy188III TCNNGA 4 cut(s) 152, 515, 564, 731
Hpy8I GTNNAC 3 cut(s) 461, 482, 621
HpyAV CCTTC 5 cut(s) 230, 332, 349, 782, 791
HpyCH4V TGCA 8 cut(s) 20, 68, 131, 254, 269, 365, 446, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 452
HpyF3I CTNAG 2 cut(s) 473, 708
Hsp92I GRCGYC 1 cut(s) 714
Hsp92II CATG 7 cut(s) 122, 175, 254, 308, 320, 471, 721
Ksp22I TGATCA 2 cut(s) 148, 727
Kzo9I GATC 2 cut(s) 148, 727
LguI GCTCTTC 2 cut(s) 247, 594
LmnI GCTCC 1 cut(s) 76
Lsp1109I GCAGC 2 cut(s) 4, 80
MaeI CTAG 2 cut(s) 80, 189
MalI GATC 2 cut(s) 150, 729
MboI GATC 2 cut(s) 148, 727
MboII GAAGA 8 cut(s) 46, 52, 234, 479, 513, 581, 710, 752
MfeI CAATTG 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 463
MluCI AATT 4 cut(s) 111, 380, 447, 792
MlyI GAGTC 4 cut(s) 147, 266, 443, 569
MnlI CCTC 7 cut(s) 7, 17, 270, 673, 694, 703, 742
MseI TTAA 2 cut(s) 96, 527
MslI CAYNNNNRTG 3 cut(s) 309, 466, 498
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 1 cut(s) 89
MunI CAATTG 1 cut(s) 380
MwoI GCNNNNNNNGC 2 cut(s) 305, 452
NcoI CCATGG 3 cut(s) 171, 467, 717
NdeII GATC 2 cut(s) 148, 727
NlaIII CATG 7 cut(s) 122, 175, 254, 308, 320, 471, 721
NspI RCATGY 1 cut(s) 308
NspV TTCGAA 1 cut(s) 786
OliI CACNNNNGTG 1 cut(s) 498
PciSI GCTCTTC 2 cut(s) 247, 594
PfeI GAWTC 3 cut(s) 385, 518, 704
PkrI GCNGC 2 cut(s) 19, 70
PleI GAGTC 4 cut(s) 146, 266, 442, 568
PpsI GAGTC 4 cut(s) 146, 266, 442, 568
PspPI GGNCC 1 cut(s) 665
PstI CTGCAG 1 cut(s) 133
PstNI CAGNNNCTG 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 3 cut(s) 309, 466, 498
SapI GCTCTTC 2 cut(s) 247, 594
SaqAI TTAA 2 cut(s) 96, 527
SatI GCNGC 2 cut(s) 18, 69
Sau3AI GATC 2 cut(s) 148, 727
Sau96I GGNCC 1 cut(s) 665
SchI GAGTC 4 cut(s) 147, 266, 443, 569
SduI GDGCHC 1 cut(s) 463
SetI ASST 9 cut(s) 81, 108, 208, 360, 394, 408, 555, 589, 667
SfcI CTRYAG 2 cut(s) 129, 660
SfuI TTCGAA 1 cut(s) 786
SinI GGWCC 1 cut(s) 665
SmiMI CAYNNNNRTG 3 cut(s) 309, 466, 498
SmlI CTYRAG 3 cut(s) 290, 513, 811
SmoI CTYRAG 3 cut(s) 290, 513, 811
Sse9I AATT 4 cut(s) 111, 380, 447, 792
SspMI CTAG 2 cut(s) 80, 189
StyI CCWWGG 3 cut(s) 171, 467, 717
TaqI TCGA 2 cut(s) 330, 786
TasI AATT 4 cut(s) 111, 380, 447, 792
TfiI GAWTC 3 cut(s) 385, 518, 704
Tru1I TTAA 2 cut(s) 96, 527
Tru9I TTAA 2 cut(s) 96, 527
TscAI CASTG 1 cut(s) 78
TseI GCWGC 2 cut(s) 17, 68
TspDTI ATGAA 5 cut(s) 17, 53, 269, 711, 753
TspRI CASTG 1 cut(s) 78
VneI GTGCAC 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 665
XceI RCATGY 1 cut(s) 308
XmiI GTMKAC 2 cut(s) 481, 620
XspI CTAG 2 cut(s) 80, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.