RLG00000036917

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000668
Physical Location & Seq
Reverse (-)
86501911 .. 86502891
981 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036917

Sequence Viewer

Length: 813 bp
ATGAGTTTCCACGGTTTGGAACAAAAACCATATGTGGTAAGAACATCTAATGATTTAGTTTTGTGCTGCCGAACTAAACATGACCAACGTGATTTCTACATTTGCAATCCATGCACAAGGCAATGGATTGCTGTTCCTCCCACCACTCGATGTTGCACGCATGCACCAGTTGGATTCGTTTGTGATGGCTACTATGAGGATACTACTAGTGTTACCAGTAGTACTGTTAATATTAAAAAGGACTACAGGCGCAAGGTTGTGAGAATTCTTCCTCACGATTTATCTACAACGGATTTCTACAGTCGTTTCTCCAAATTCATTGTTGAGGTATTCTCTTTTGAGACGGGTGAATGGAGAGAGTCAATTGTATCATCCCCACGAAGCATTAACATTAGTGACACTAGCGTTGCTTACAATGGAATGTTGTATTGGACATATACAGCATCTAAGCCTCGTGAGGAGACCGGACTTATTAGGCTGGATCCGTTTGTGATCGGCAATGGCAGTGCTTGTAGTGGTAATGATGATCTTGGATCAGCTGACAAATTGTATTTGAAAGAATTGAGTGTTTATCCGGTAACCAGCAAAGTTCTTGAATATGATGATGGAGCTGTTCTTCTAGCTTTGGAACCAAATGATGAGGATATCGTTTATGTAAAAAGCTACCCAATATGCTATTTCATGTACAACATTCGTAGAAGAAGGTGGTCAAAAGTAGCTAGCACCAAGTATTTTGAAGAGTTGTGGTCAATCATCTCTTTCGATTGGTGCTCCCATGGTGGCCAACACCACTTCGTAGACTCCAATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

271

Amino Acids

31.04

Weight (kDa)

6.17

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 9 - 161 1.2e-14 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 13 - 158 3.8e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 16
AccI GTMKAC 1 cut(s) 798
AclWI GGATC 3 cut(s) 476, 489, 541
AcoI YGGCCR 1 cut(s) 781
AcsI RAATTY 2 cut(s) 264, 314
AfaI GTAC 2 cut(s) 223, 686
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 3 cut(s) 556, 596, 737
AhlI ACTAGT 1 cut(s) 206
AjuI GAANNNNNNNTTGG 2 cut(s) 412, 444
AluBI AGCT 5 cut(s) 539, 611, 623, 663, 719
AluI AGCT 5 cut(s) 539, 611, 623, 663, 719
Alw21I GWGCWC 1 cut(s) 773
Alw26I GTCTC 2 cut(s) 335, 455
AlwI GGATC 3 cut(s) 476, 489, 541
AoxI GGCC 1 cut(s) 781
ApeKI GCWGC 1 cut(s) 66
ApoI RAATTY 2 cut(s) 264, 314
AspLEI GCGC 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 359
AsuNHI GCTAGC 1 cut(s) 719
BalI TGGCCA 1 cut(s) 783
BamHI GGATCC 1 cut(s) 481
BauI CACGAG 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 773
BbvI GCAGC 1 cut(s) 53
BccI CCATC 2 cut(s) 179, 599
BciVI GTATCC 1 cut(s) 193
BcoDI GTCTC 2 cut(s) 335, 455
BcuI ACTAGT 1 cut(s) 206
BfaI CTAG 4 cut(s) 207, 402, 620, 720
BfmI CTRYAG 2 cut(s) 244, 298
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
BmcAI AGTACT 1 cut(s) 223
BmiI GGNNCC 2 cut(s) 483, 630
BmsI GCATC 1 cut(s) 452
BmtI GCTAGC 1 cut(s) 723
BplI GAGNNNNNCTC 2 cut(s) 317, 349
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 2 cut(s) 10, 775
BsaWI WCCGGW 2 cut(s) 464, 574
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 167, 216
Bse3DI GCAATG 2 cut(s) 128, 505
BseDI CCNNGG 2 cut(s) 10, 775
BseGI GGATG 1 cut(s) 371
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 2 cut(s) 128, 505
BseNI ACTGG 2 cut(s) 167, 216
BseRI GAGGAG 1 cut(s) 473
BseXI GCAGC 1 cut(s) 53
BshFI GGCC 1 cut(s) 783
BsiHKAI GWGCWC 1 cut(s) 773
BsiSI CCGG 2 cut(s) 465, 575
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 2 cut(s) 335, 455
BsmBI CGTCTC 1 cut(s) 335
BsnI GGCC 1 cut(s) 783
Bso31I GGTCTC 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 773
Bsp1407I TGTACA 1 cut(s) 684
Bsp143I GATC 4 cut(s) 481, 492, 526, 533
Bsp19I CCATGG 1 cut(s) 775
BspANI GGCC 1 cut(s) 783
BspLI GGNNCC 2 cut(s) 483, 630
BspOI GCTAGC 1 cut(s) 723
BspPI GGATC 3 cut(s) 476, 489, 541
BspTNI GGTCTC 1 cut(s) 455
BsrDI GCAATG 2 cut(s) 128, 505
BsrGI TGTACA 1 cut(s) 684
BsrI ACTGG 2 cut(s) 167, 216
BssECI CCNNGG 2 cut(s) 10, 775
BssMI GATC 4 cut(s) 481, 492, 526, 533
BssSI CACGAG 1 cut(s) 453
BssT1I CCWWGG 1 cut(s) 775
Bst2BI CACGAG 1 cut(s) 453
Bst4CI ACNGT 3 cut(s) 14, 226, 302
Bst6I CTCTTC 1 cut(s) 732
BstAPI GCANNNNNTGC 1 cut(s) 111
BstAUI TGTACA 1 cut(s) 684
BstC8I GCNNGC 3 cut(s) 158, 162, 721
BstDEI CTNAG 1 cut(s) 447
BstDSI CCRYGG 2 cut(s) 10, 775
BstEII GGTNACC 1 cut(s) 577
BstF5I GGATG 1 cut(s) 371
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 4 cut(s) 484, 495, 529, 536
BstMAI GTCTC 2 cut(s) 335, 455
BstMBI GATC 4 cut(s) 481, 492, 526, 533
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstNSI RCATGY 1 cut(s) 164
BstPI GGTNACC 1 cut(s) 577
BstSFI CTRYAG 2 cut(s) 244, 298
BstV1I GCAGC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
BsuI GTATCC 1 cut(s) 193
BsuRI GGCC 1 cut(s) 783
BtgI CCRYGG 2 cut(s) 10, 775
BtsCI GGATG 1 cut(s) 371
BtsI GCAGTG 1 cut(s) 511
BtsIMutI CAGTG 1 cut(s) 511
Cac8I GCNNGC 3 cut(s) 158, 162, 721
CfoI GCGC 1 cut(s) 252
Csp6I GTAC 2 cut(s) 222, 685
CviAII CATG 5 cut(s) 80, 111, 161, 682, 776
CviJI RGCY 9 cut(s) 189, 451, 478, 539, 611, 623, 663, 719, 783
CviKI_1 RGCY 9 cut(s) 189, 451, 478, 539, 611, 623, 663, 719, 783
CviQI GTAC 2 cut(s) 222, 685
DdeI CTNAG 1 cut(s) 447
DpnI GATC 4 cut(s) 483, 494, 528, 535
DpnII GATC 4 cut(s) 481, 492, 526, 533
EaeI YGGCCR 1 cut(s) 781
Eam1104I CTCTTC 1 cut(s) 732
EarI CTCTTC 1 cut(s) 732
Eco130I CCWWGG 1 cut(s) 775
Eco31I GGTCTC 1 cut(s) 455
Eco32I GATATC 1 cut(s) 646
Eco91I GGTNACC 1 cut(s) 577
EcoO65I GGTNACC 1 cut(s) 577
EcoRI GAATTC 1 cut(s) 264
EcoRV GATATC 1 cut(s) 646
EcoT14I CCWWGG 1 cut(s) 775
ErhI CCWWGG 1 cut(s) 775
Esp3I CGTCTC 1 cut(s) 335
FaeI CATG 5 cut(s) 83, 114, 164, 685, 779
FatI CATG 5 cut(s) 79, 110, 160, 681, 775
FauNDI CATATG 1 cut(s) 31
FblI GTMKAC 1 cut(s) 798
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 1 cut(s) 358
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 4 cut(s) 207, 402, 620, 720
GlaI GCGC 1 cut(s) 251
GluI GCNGC 1 cut(s) 67
HaeIII GGCC 1 cut(s) 783
HapII CCGG 2 cut(s) 465, 575
HhaI GCGC 1 cut(s) 252
Hin1II CATG 5 cut(s) 83, 114, 164, 685, 779
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HinfI GANTC 3 cut(s) 174, 359, 800
HpaII CCGG 2 cut(s) 465, 575
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 799
Hpy188III TCNNGA 3 cut(s) 275, 455, 593
Hpy8I GTNNAC 1 cut(s) 799
HpyAV CCTTC 1 cut(s) 696
HpyCH4III ACNGT 3 cut(s) 14, 226, 302
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 4 cut(s) 105, 114, 156, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
HpyF3I CTNAG 1 cut(s) 447
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 5 cut(s) 83, 114, 164, 685, 779
HspAI GCGC 1 cut(s) 250
Kzo9I GATC 4 cut(s) 481, 492, 526, 533
LmnI GCTCC 2 cut(s) 608, 776
LpnPI CCDG 7 cut(s) 180, 229, 232, 464, 478, 588, 595
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 452
MaeI CTAG 4 cut(s) 207, 402, 620, 720
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 3 cut(s) 211, 395, 577
MalI GATC 4 cut(s) 483, 494, 528, 535
MboI GATC 4 cut(s) 481, 492, 526, 533
MboII GAAGA 4 cut(s) 260, 608, 711, 749
MfeI CAATTG 1 cut(s) 363
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 1 cut(s) 773
MlsI TGGCCA 1 cut(s) 783
MluCI AATT 5 cut(s) 264, 314, 363, 545, 560
MluNI TGGCCA 1 cut(s) 783
MlyI GAGTC 2 cut(s) 368, 794
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 7 cut(s) 147, 190, 282, 319, 451, 462, 634
Mox20I TGGCCA 1 cut(s) 783
MscI TGGCCA 1 cut(s) 783
MseI TTAA 3 cut(s) 228, 234, 387
Msp20I TGGCCA 1 cut(s) 783
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 2 cut(s) 465, 575
MunI CAATTG 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 111
NcoI CCATGG 1 cut(s) 775
NdeI CATATG 1 cut(s) 31
NdeII GATC 4 cut(s) 481, 492, 526, 533
NheI GCTAGC 1 cut(s) 719
NlaIII CATG 5 cut(s) 83, 114, 164, 685, 779
NlaIV GGNNCC 2 cut(s) 483, 630
NmuCI GTSAC 1 cut(s) 395
NspI RCATGY 1 cut(s) 164
PaeI GCATGC 1 cut(s) 164
PfeI GAWTC 1 cut(s) 174
PflMI CCANNNNNTGG 1 cut(s) 16
PkrI GCNGC 1 cut(s) 68
PleI GAGTC 2 cut(s) 367, 794
PpsI GAGTC 2 cut(s) 367, 794
PspEI GGTNACC 1 cut(s) 577
PspN4I GGNNCC 2 cut(s) 483, 630
PsuI RGATCY 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 539
RsaI GTAC 2 cut(s) 223, 686
RsaNI GTAC 2 cut(s) 222, 685
SaqAI TTAA 3 cut(s) 228, 234, 387
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 4 cut(s) 481, 492, 526, 533
ScaI AGTACT 1 cut(s) 223
SchI GAGTC 2 cut(s) 368, 794
SduI GDGCHC 1 cut(s) 773
SetI ASST 9 cut(s) 91, 258, 330, 541, 613, 625, 665, 707, 721
SfaNI GCATC 1 cut(s) 452
SfcI CTRYAG 2 cut(s) 244, 298
SpeI ACTAGT 1 cut(s) 206
SphI GCATGC 1 cut(s) 164
Sse9I AATT 5 cut(s) 264, 314, 363, 545, 560
SspI AATATT 1 cut(s) 232
SspMI CTAG 4 cut(s) 207, 402, 620, 720
StyI CCWWGG 1 cut(s) 775
TaaI ACNGT 3 cut(s) 14, 226, 302
TaiI ACGT 1 cut(s) 91
TaqI TCGA 2 cut(s) 148, 762
TasI AATT 5 cut(s) 264, 314, 363, 545, 560
TatI WGTACW 2 cut(s) 221, 684
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 3 cut(s) 228, 234, 387
Tru9I TTAA 3 cut(s) 228, 234, 387
TscAI CASTG 1 cut(s) 511
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 2 cut(s) 307, 670
TspGWI ACGGA 2 cut(s) 305, 474
TspRI CASTG 1 cut(s) 511
Van91I CCANNNNNTGG 1 cut(s) 16
XapI RAATTY 2 cut(s) 264, 314
XceI RCATGY 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 798
XspI CTAG 4 cut(s) 207, 402, 620, 720
ZrmI AGTACT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.