Rw1G009620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000668
Physical Location & Seq
Forward (+)
21111799 .. 21114780
2982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009620.1

Sequence Viewer

Length: 1341 bp
ATGAAGTTTAAACGCAGTGTTTTGAGTGGAAGGGAAAAGAGATCATCAGAAGTATCACCCTCCGATGGTACCCCTATTCACTCAACAAGATCAAAATCCACAAATGTTGTTAACATTGATGATCTCCCTGACGTTCTGTTGGTTGAAATCCTATGTCGGCTTCCTAGCAAGGAATTCCTCAATCTTATCTCATATCCGTATTTGATTGGCTGTTTTCGAAATCTTCAAGGATTTCATAAGCAAACCCCAGTAGCACATTGTCTGATTCTGATAGATAGCAGAGGTGAGGAATTCCCCACTTCTATAATAACACAGTCGTCATCCAATCTGCTAGCTCCCCTGTTCAAAAGACTCATGGGCTTCCACGGTCTGGAAGAAAAGCCATATGTGGTAGGAACATCTAATGATATAGTTTTGTGCTACCAAACTCCATATTACCAAGACCAACTTGATTTCTATATTTGCAATCCATGCACAAGGCAATGGATTGCTCTTCCTCCCACCACTCGACGTCGCACAAATGTACCAGTTGGATTCATCTGTGATCTCTACTACGAGGAGGAAGATGCTACTAATGGAACCAATAGTACTGTTAATACTAAAAAGGACTACAGATGCAAGGTTGTGAGAATTCTTCCTCAAGATTTATCTAAACTTTTTTACAGTCGTTGTTCCAAATTCATTGTTGAGATATTCTCTTTTGAGACTGGTGAATGGAGAGAGTCAATTGTATCATCCCCACGAAGCATTGGGTTTGGACCTGCTACTAGCATTGCTTACAATGGAATGTTGTATTGGACATATAGAGGCCAGAACCAGACCTGGCTTATTAGGTTGGATCCTTTTGTGATCGGCAATGGCAGTGCTAGTGGTGGTAACCCTAATGGTAATGAGACTATTGACGATGATCATTACCAATTTCGTCTCTTTGATGCAGTTGATATTGATTTAGACATGCCATGGATATCCCACTATGGCCGGAACGCTGATTTTGTAGTTTGGGAGTTAACAGGTGATGATGATCTTGGATCAACTGACGAGTTCTATTTGAAAAATGTGAGTGTCTATCCAAACTTTACCACCTGTGAAGTTTATACAAATAATGTTTTTCTTCTATCTTTGGACCCGGATGATGAGGATATCTTTTATGTAAAAGGGTATGATGGCTGTTTCCGGAACAAATACTATTTCATGTACAACATTTGTACAAGAAAGTGGTCAAAAGTAGCTAGCACCAAGCATGTTGAAGACGATCATCTCTTTCGATTGGTGCTCCCATGGTGGCCAACACCACTTCGTAGACTACCTGTGGTTGAAGAATTACCCATGCCATATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

446

Amino Acids

51.45

Weight (kDa)

5.4

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 127 - 272 2.4e-09 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 514
Acc36I ACCTGC 1 cut(s) 769
Acc65I GGTACC 1 cut(s) 68
AccB1I GGYRCC 1 cut(s) 68
AccB7I CCANNNNNTGG 1 cut(s) 370
AccI GTMKAC 1 cut(s) 1300
AccIII TCCGGA 1 cut(s) 1173
AclWI GGATC 3 cut(s) 833, 846, 1036
AcoI YGGCCR 2 cut(s) 976, 1283
AcsI RAATTY 4 cut(s) 173, 290, 630, 677
AcyI GRCGYC 1 cut(s) 511
AfaI GTAC 5 cut(s) 70, 525, 589, 1196, 1207
AfiI CCNNNNNNNGG 2 cut(s) 65, 370
AgsI TTSAA 6 cut(s) 146, 227, 346, 1051, 1247, 1316
AjnI CCWGG 1 cut(s) 821
AjuI GAANNNNNNNTTGG 2 cut(s) 778, 810
AluBI AGCT 3 cut(s) 335, 1229, 1338
AluI AGCT 3 cut(s) 335, 1229, 1338
Alw21I GWGCWC 1 cut(s) 1275
Alw26I GTCTC 3 cut(s) 698, 887, 929
AlwI GGATC 3 cut(s) 833, 846, 1036
Aor13HI TCCGGA 1 cut(s) 1173
AoxI GGCC 3 cut(s) 808, 976, 1283
ApoI RAATTY 4 cut(s) 173, 290, 630, 677
Asp718I GGTACC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 758, 1123
AsuC2I CCSGG 1 cut(s) 1127
AsuHPI GGTGA 4 cut(s) 48, 296, 722, 1025
AsuII TTCGAA 1 cut(s) 217
AsuNHI GCTAGC 2 cut(s) 331, 1229
AvaII GGWCC 2 cut(s) 758, 1123
BaeI ACNNNNGTAYC 2 cut(s) 507, 540
BalI TGGCCA 1 cut(s) 1285
BamHI GGATCC 1 cut(s) 838
BanI GGYRCC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 1254
Bbv12I GWGCWC 1 cut(s) 1275
BccI CCATC 2 cut(s) 59, 1157
BciT130I CCWGG 1 cut(s) 823
BclI TGATCA 1 cut(s) 907
BcnI CCSGG 1 cut(s) 1127
BcoDI GTCTC 3 cut(s) 698, 887, 929
BfaI CTAG 6 cut(s) 165, 332, 768, 867, 1230, 1339
BfmI CTRYAG 1 cut(s) 610
BfuAI ACCTGC 1 cut(s) 769
BmcAI AGTACT 1 cut(s) 589
Bme1390I CCNGG 2 cut(s) 823, 1127
Bme18I GGWCC 2 cut(s) 758, 1123
BmgT120I GGNCC 2 cut(s) 758, 1123
BmiI GGNNCC 4 cut(s) 70, 580, 840, 1125
BmrFI CCNGG 2 cut(s) 823, 1127
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 3 cut(s) 556, 605, 922
BmtI GCTAGC 2 cut(s) 335, 1233
BmuI ACTGGG 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 1254
BplI GAGNNNNNCTC 2 cut(s) 680, 712
Bpu14I TTCGAA 1 cut(s) 217
BpuEI CTTGAG 1 cut(s) 624
BpuMI CCSGG 1 cut(s) 1127
BsaBI GATNNNNATC 2 cut(s) 94, 1020
BsaHI GRCGYC 1 cut(s) 511
BsaJI CCNNGG 3 cut(s) 364, 959, 1277
BsaWI WCCGGW 1 cut(s) 1173
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 370
Bse1I ACTGG 3 cut(s) 248, 527, 712
Bse3DI GCAATG 3 cut(s) 488, 771, 862
Bse8I GATNNNNATC 2 cut(s) 94, 1020
BseAI TCCGGA 1 cut(s) 1173
BseBI CCWGG 1 cut(s) 823
BseDI CCNNGG 3 cut(s) 364, 959, 1277
BseGI GGATG 3 cut(s) 320, 734, 1135
BseJI GATNNNNATC 2 cut(s) 94, 1020
BseLI CCNNNNNNNGG 2 cut(s) 65, 370
BseMI GCAATG 3 cut(s) 488, 771, 862
BseNI ACTGG 3 cut(s) 248, 527, 712
BseRI GAGGAG 1 cut(s) 572
BshFI GGCC 3 cut(s) 810, 978, 1285
BshNI GGYRCC 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 1275
BsiSI CCGG 3 cut(s) 979, 1127, 1174
BslI CCNNNNNNNGG 2 cut(s) 65, 370
BsmAI GTCTC 3 cut(s) 698, 887, 929
BsmBI CGTCTC 1 cut(s) 929
BsnI GGCC 3 cut(s) 810, 978, 1285
Bsp119I TTCGAA 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 1275
Bsp13I TCCGGA 1 cut(s) 1173
Bsp1407I TGTACA 2 cut(s) 1194, 1205
Bsp19I CCATGG 2 cut(s) 959, 1277
BspANI GGCC 3 cut(s) 810, 978, 1285
BspEI TCCGGA 1 cut(s) 1173
BspLI GGNNCC 4 cut(s) 70, 580, 840, 1125
BspMI ACCTGC 1 cut(s) 769
BspOI GCTAGC 2 cut(s) 335, 1233
BspPI GGATC 3 cut(s) 833, 846, 1036
BspQI GCTCTTC 1 cut(s) 498
BspT104I TTCGAA 1 cut(s) 217
BspT107I GGYRCC 1 cut(s) 68
BsrDI GCAATG 3 cut(s) 488, 771, 862
BsrGI TGTACA 2 cut(s) 1194, 1205
BsrI ACTGG 3 cut(s) 248, 527, 712
BssECI CCNNGG 3 cut(s) 364, 959, 1277
BssNI GRCGYC 1 cut(s) 511
BssT1I CCWWGG 2 cut(s) 959, 1277
Bst2UI CCWGG 1 cut(s) 823
Bst4CI ACNGT 4 cut(s) 315, 368, 592, 665
Bst6I CTCTTC 1 cut(s) 498
BstACI GRCGYC 1 cut(s) 511
BstAPI GCANNNNNTGC 1 cut(s) 471
BstAUI TGTACA 2 cut(s) 1194, 1205
BstBI TTCGAA 1 cut(s) 217
BstC8I GCNNGC 2 cut(s) 333, 1231
BstDSI CCRYGG 3 cut(s) 364, 959, 1277
BstEII GGTNACC 1 cut(s) 875
BstF5I GGATG 3 cut(s) 320, 734, 1135
BstMAI GTCTC 3 cut(s) 698, 887, 929
BstMWI GCNNNNNNNGC 1 cut(s) 471
BstNI CCWGG 1 cut(s) 823
BstNSI RCATGY 2 cut(s) 958, 1244
BstPI GGTNACC 1 cut(s) 875
BstSCI CCNGG 2 cut(s) 821, 1125
BstSFI CTRYAG 1 cut(s) 610
BstV2I GAAGAC 1 cut(s) 1254
BstX2I RGATCY 1 cut(s) 838
BstYI RGATCY 1 cut(s) 838
BsuRI GGCC 3 cut(s) 810, 978, 1285
BtgI CCRYGG 3 cut(s) 364, 959, 1277
BtsCI GGATG 3 cut(s) 320, 734, 1135
BtsI GCAGTG 2 cut(s) 22, 868
BtsIMutI CAGTG 2 cut(s) 22, 868
BveI ACCTGC 1 cut(s) 769
Cac8I GCNNGC 2 cut(s) 333, 1231
Cfr13I GGNCC 2 cut(s) 758, 1123
Csp6I GTAC 5 cut(s) 69, 524, 588, 1195, 1206
CspCI CAANNNNNGTGG 2 cut(s) 88, 123
CviAII CATG 8 cut(s) 355, 471, 955, 960, 1192, 1241, 1278, 1327
CviQI GTAC 5 cut(s) 69, 524, 588, 1195, 1206
DraI TTTAAA 1 cut(s) 10
EaeI YGGCCR 2 cut(s) 976, 1283
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Eco130I CCWWGG 2 cut(s) 959, 1277
Eco32I GATATC 2 cut(s) 966, 1141
Eco47I GGWCC 2 cut(s) 758, 1123
Eco91I GGTNACC 1 cut(s) 875
EcoO65I GGTNACC 1 cut(s) 875
EcoRI GAATTC 3 cut(s) 173, 290, 630
EcoRII CCWGG 1 cut(s) 821
EcoRV GATATC 2 cut(s) 966, 1141
EcoT14I CCWWGG 2 cut(s) 959, 1277
ErhI CCWWGG 2 cut(s) 959, 1277
Esp3I CGTCTC 1 cut(s) 929
FaeI CATG 8 cut(s) 358, 474, 958, 963, 1195, 1244, 1281, 1330
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FatI CATG 8 cut(s) 354, 470, 954, 959, 1191, 1240, 1277, 1326
FauNDI CATATG 1 cut(s) 385
FbaI TGATCA 1 cut(s) 907
FblI GTMKAC 1 cut(s) 1300
FokI GGATG 3 cut(s) 307, 721, 1142
FspBI CTAG 6 cut(s) 165, 332, 768, 867, 1230, 1339
HaeIII GGCC 3 cut(s) 810, 978, 1285
HapII CCGG 3 cut(s) 979, 1127, 1174
Hin1I GRCGYC 1 cut(s) 511
Hin1II CATG 8 cut(s) 358, 474, 958, 963, 1195, 1244, 1281, 1330
HincII GTYRAC 2 cut(s) 112, 1008
HindII GTYRAC 2 cut(s) 112, 1008
HinfI GANTC 4 cut(s) 265, 351, 534, 722
HpaI GTTAAC 2 cut(s) 112, 1008
HpaII CCGG 3 cut(s) 979, 1127, 1174
HphI GGTGA 4 cut(s) 48, 296, 722, 1025
Hpy166II GTNNAC 3 cut(s) 112, 1008, 1301
Hpy188I TCNGA 4 cut(s) 49, 64, 264, 270
Hpy188III TCNNGA 3 cut(s) 371, 641, 1174
Hpy8I GTNNAC 3 cut(s) 112, 1008, 1301
Hpy99I CGWCG 2 cut(s) 513, 516
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 4 cut(s) 315, 368, 592, 665
HpyCH4IV ACGT 2 cut(s) 132, 511
HpyCH4V TGCA 4 cut(s) 465, 474, 618, 935
HpyF10VI GCNNNNNNNGC 1 cut(s) 471
HpySE526I ACGT 2 cut(s) 132, 511
Hsp92I GRCGYC 1 cut(s) 511
Hsp92II CATG 8 cut(s) 358, 474, 958, 963, 1195, 1244, 1281, 1330
Kpn2I TCCGGA 1 cut(s) 1173
KpnI GGTACC 1 cut(s) 72
Ksp22I TGATCA 1 cut(s) 907
KspAI GTTAAC 2 cut(s) 112, 1008
LguI GCTCTTC 1 cut(s) 498
LmnI GCTCC 2 cut(s) 340, 1278
LweI GCATC 3 cut(s) 556, 605, 922
MaeI CTAG 6 cut(s) 165, 332, 768, 867, 1230, 1339
MaeII ACGT 2 cut(s) 132, 511
MaeIII GTNAC 1 cut(s) 875
MboII GAAGA 8 cut(s) 215, 386, 485, 575, 626, 1103, 1259, 1328
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 1 cut(s) 838
MhlI GDGCHC 1 cut(s) 1275
MlsI TGGCCA 1 cut(s) 1285
MluCI AATT 7 cut(s) 173, 290, 630, 677, 726, 917, 1319
MluNI TGGCCA 1 cut(s) 1285
MlyI GAGTC 2 cut(s) 345, 731
MmeI TCCRAC 2 cut(s) 511, 816
Mox20I TGGCCA 1 cut(s) 1285
MroI TCCGGA 1 cut(s) 1173
MscI TGGCCA 1 cut(s) 1285
MseI TTAA 4 cut(s) 9, 111, 594, 1007
Msp20I TGGCCA 1 cut(s) 1285
MspI CCGG 3 cut(s) 979, 1127, 1174
MspR9I CCNGG 2 cut(s) 823, 1127
MssI GTTTAAAC 1 cut(s) 10
MunI CAATTG 1 cut(s) 726
MvaI CCWGG 1 cut(s) 823
MwoI GCNNNNNNNGC 1 cut(s) 471
NciI CCSGG 1 cut(s) 1127
NcoI CCATGG 2 cut(s) 959, 1277
NdeI CATATG 1 cut(s) 385
NheI GCTAGC 2 cut(s) 331, 1229
NlaIII CATG 8 cut(s) 358, 474, 958, 963, 1195, 1244, 1281, 1330
NlaIV GGNNCC 4 cut(s) 70, 580, 840, 1125
NspI RCATGY 2 cut(s) 958, 1244
NspV TTCGAA 1 cut(s) 217
PciSI GCTCTTC 1 cut(s) 498
PfeI GAWTC 2 cut(s) 265, 534
PflMI CCANNNNNTGG 1 cut(s) 370
PleI GAGTC 2 cut(s) 345, 730
PmeI GTTTAAAC 1 cut(s) 10
PpsI GAGTC 2 cut(s) 345, 730
Psp6I CCWGG 1 cut(s) 821
PspEI GGTNACC 1 cut(s) 875
PspGI CCWGG 1 cut(s) 821
PspN4I GGNNCC 4 cut(s) 70, 580, 840, 1125
PspPI GGNCC 2 cut(s) 758, 1123
PsrI GAACNNNNNNTAC 2 cut(s) 571, 603
PsuI RGATCY 1 cut(s) 838
RsaI GTAC 5 cut(s) 70, 525, 589, 1196, 1207
RsaNI GTAC 5 cut(s) 69, 524, 588, 1195, 1206
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 4 cut(s) 9, 111, 594, 1007
Sau96I GGNCC 2 cut(s) 758, 1123
ScaI AGTACT 1 cut(s) 589
SchI GAGTC 2 cut(s) 345, 731
ScrFI CCNGG 2 cut(s) 823, 1127
SduI GDGCHC 1 cut(s) 1275
SfaNI GCATC 3 cut(s) 556, 605, 922
SfcI CTRYAG 1 cut(s) 610
SfuI TTCGAA 1 cut(s) 217
SinI GGWCC 2 cut(s) 758, 1123
SmlI CTYRAG 1 cut(s) 639
SmoI CTYRAG 1 cut(s) 639
Sse9I AATT 7 cut(s) 173, 290, 630, 677, 726, 917, 1319
SspMI CTAG 6 cut(s) 165, 332, 768, 867, 1230, 1339
StyD4I CCNGG 2 cut(s) 821, 1125
StyI CCWWGG 2 cut(s) 959, 1277
TaaI ACNGT 4 cut(s) 315, 368, 592, 665
TaiI ACGT 2 cut(s) 135, 514
TaqI TCGA 3 cut(s) 217, 508, 1264
TasI AATT 7 cut(s) 173, 290, 630, 677, 726, 917, 1319
TatI WGTACW 3 cut(s) 587, 1194, 1205
TfiI GAWTC 2 cut(s) 265, 534
Tru1I TTAA 4 cut(s) 9, 111, 594, 1007
Tru9I TTAA 4 cut(s) 9, 111, 594, 1007
TscAI CASTG 2 cut(s) 22, 868
TspDTI ATGAA 5 cut(s) 17, 224, 526, 670, 1180
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 2 cut(s) 22, 868
Van91I CCANNNNNTGG 1 cut(s) 370
VpaK11BI GGWCC 2 cut(s) 758, 1123
XapI RAATTY 4 cut(s) 173, 290, 630, 677
XceI RCATGY 2 cut(s) 958, 1244
XmiI GTMKAC 1 cut(s) 1300
XspI CTAG 6 cut(s) 165, 332, 768, 867, 1230, 1339
ZraI GACGTC 1 cut(s) 512
ZrmI AGTACT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.