RchiOBHm_Chr5g0081211

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000668
Physical Location & Seq
Reverse (-)
87197233 .. 87198210
978 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35547

Sequence Viewer

Length: 978 bp
ATGAGTGGATGGGAAAGGAGATCATCAGAAGTACCACCCTCCGATAAAACTCCTCCTATTCACTCAACAAGTACAAAATCCACACATGTTCTTAAGATTGATGATCTCCCTGACTTTCTGTTGGTTGAAATCCTATGTCGGCTTCCTAGCAAGGAATTCGTTTTCCAATGCAAATGTGTTTCCAAGCATTGGCTCAATCTCATCTCAGATCCTTATTTGATTGGCCGCTTTCTACATCTTCAAAGATTTCATAAGCAAACCCCAATAGCACATTCTCTGATAGATAGAAGAGGGGAGGAATTCCCCACTCCTGGAACAACACAGTCGTCATCCAATCTGCTAGCTCCCCTGTTCGAAAGACTCATGGGTTTCCACGGTCTGAAAGAAAAGCCATATATAGTAGGAACATGTAATGATTTAGTTTTGTGCTGCCAAACTCGACATGACCAAGACCAACTTGATTTCTACATTTGCAATCCATGCACAAGGAAATGGATTGCTCTTCCTCCCACCACCCGAAGTCGCACGAATGTACCAGTTGGATTCATCTGTGATCGCTACTATGACGAGGAAGATAGTACTAGTGGTACCAATAGTACTGTTAATATTAAAAAGGACTACAGGTGCAAGGTTGTGAGAATTCTTCCTCATGATTTATCTAAATCTTTTTACGATTGTGCTTCGAAATTCATTGTTGAGGTATTCTCTTTTGAGACTGGTGAATGGAGAGAGTCAATTGTATCATCCCCACGAAGCATTAACATTGGAGACACTAGCGTTGCTTACAATGGAATGTTGTATTGGACATATACGGCATATGAGCCTCGTGAGGAGACCGGGCTTATTAGGCTGGATCCGTTTATGCTCGACAATGGCAGTGCTGGTAGTGGTAGGCCTAATGGTGATGTGACTGGTGACGATGATCAGTACAAATTTTATATCTTTGATGCAGTTGATAAGTTTTTAGAAAGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

325

Amino Acids

37.24

Weight (kDa)

6.01

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 33 - 73 1.2e-07 F-box domain
FBA_1 PF07734 130 - 281 2.3e-08 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 131 - 286 9.9e-11 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 587
AccB1I GGYRCC 1 cut(s) 587
AccB7I CCANNNNNTGG 1 cut(s) 189
AciI CCGC 1 cut(s) 226
AclWI GGATC 3 cut(s) 203, 848, 861
AcoI YGGCCR 1 cut(s) 223
AcsI RAATTY 5 cut(s) 155, 299, 639, 686, 932
AfaI GTAC 7 cut(s) 33, 73, 534, 580, 589, 598, 929
AfiI CCNNNNNNNGG 2 cut(s) 189, 311
AflII CTTAAG 1 cut(s) 92
AflIII ACRYGT 2 cut(s) 85, 407
AgsI TTSAA 2 cut(s) 128, 242
AhlI ACTAGT 1 cut(s) 581
AjnI CCWGG 1 cut(s) 310
AjuI GAANNNNNNNTTGG 4 cut(s) 256, 288, 784, 816
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
Alw26I GTCTC 3 cut(s) 707, 762, 827
AlwI GGATC 3 cut(s) 203, 848, 861
AoxI GGCC 3 cut(s) 223, 893, 971
ApeKI GCWGC 1 cut(s) 429
ApoI RAATTY 5 cut(s) 155, 299, 639, 686, 932
Asp718I GGTACC 1 cut(s) 587
AsuC2I CCSGG 1 cut(s) 838
AsuHPI GGTGA 3 cut(s) 731, 914, 926
AsuII TTCGAA 2 cut(s) 354, 683
AsuNHI GCTAGC 1 cut(s) 340
BaeI ACNNNNGTAYC 2 cut(s) 516, 549
BamHI GGATCC 1 cut(s) 853
BanI GGYRCC 1 cut(s) 587
BauI CACGAG 1 cut(s) 825
BbvI GCAGC 1 cut(s) 416
BccI CCATC 1 cut(s) 3
BceAI ACGGC 1 cut(s) 828
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BciT130I CCWGG 1 cut(s) 312
BclI TGATCA 1 cut(s) 922
BcnI CCSGG 1 cut(s) 838
BcoDI GTCTC 3 cut(s) 707, 762, 827
BcuI ACTAGT 1 cut(s) 581
BfaI CTAG 4 cut(s) 147, 341, 582, 774
BfmI CTRYAG 1 cut(s) 619
BfrI CTTAAG 1 cut(s) 92
BisI GCNGC 2 cut(s) 226, 430
BlsI GCNGC 2 cut(s) 227, 431
BmcAI AGTACT 2 cut(s) 580, 598
Bme1390I CCNGG 2 cut(s) 312, 838
BmiI GGNNCC 2 cut(s) 589, 855
BmrFI CCNGG 2 cut(s) 312, 838
BmsI GCATC 1 cut(s) 937
BmtI GCTAGC 1 cut(s) 344
BplI GAGNNNNNCTC 2 cut(s) 689, 721
Bpu14I TTCGAA 2 cut(s) 354, 683
BpuMI CCSGG 1 cut(s) 838
BsaI GGTCTC 1 cut(s) 827
BsaJI CCNNGG 1 cut(s) 373
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 311
Bse1I ACTGG 3 cut(s) 536, 721, 916
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 3 cut(s) 14, 329, 743
BseLI CCNNNNNNNGG 2 cut(s) 189, 311
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 3 cut(s) 536, 721, 916
BseRI GAGGAG 2 cut(s) 42, 845
BseXI GCAGC 1 cut(s) 416
BshFI GGCC 3 cut(s) 225, 895, 973
BshNI GGYRCC 1 cut(s) 587
BsiSI CCGG 1 cut(s) 837
BslI CCNNNNNNNGG 2 cut(s) 189, 311
BsmAI GTCTC 3 cut(s) 707, 762, 827
BsnI GGCC 3 cut(s) 225, 895, 973
Bso31I GGTCTC 1 cut(s) 827
Bsp119I TTCGAA 2 cut(s) 354, 683
Bsp143I GATC 6 cut(s) 20, 103, 208, 553, 853, 922
BspACI CCGC 1 cut(s) 226
BspANI GGCC 3 cut(s) 225, 895, 973
BspCNI CTCAG 1 cut(s) 218
BspHI TCATGA 1 cut(s) 649
BspLI GGNNCC 2 cut(s) 589, 855
BspOI GCTAGC 1 cut(s) 344
BspPI GGATC 3 cut(s) 203, 848, 861
BspQI GCTCTTC 1 cut(s) 507
BspT104I TTCGAA 2 cut(s) 354, 683
BspT107I GGYRCC 1 cut(s) 587
BspTI CTTAAG 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 827
BsrI ACTGG 3 cut(s) 536, 721, 916
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 6 cut(s) 20, 103, 208, 553, 853, 922
BssSI CACGAG 1 cut(s) 825
Bst2BI CACGAG 1 cut(s) 825
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 3 cut(s) 324, 377, 601
Bst6I CTCTTC 2 cut(s) 283, 507
BstAFI CTTAAG 1 cut(s) 92
BstAPI GCANNNNNTGC 1 cut(s) 480
BstBI TTCGAA 2 cut(s) 354, 683
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 205
BstDSI CCRYGG 1 cut(s) 373
BstF5I GGATG 3 cut(s) 14, 329, 743
BstKTI GATC 6 cut(s) 23, 106, 211, 556, 856, 925
BstMAI GTCTC 3 cut(s) 707, 762, 827
BstMBI GATC 6 cut(s) 20, 103, 208, 553, 853, 922
BstMWI GCNNNNNNNGC 2 cut(s) 480, 847
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 2 cut(s) 89, 411
BstSCI CCNGG 2 cut(s) 310, 836
BstSFI CTRYAG 1 cut(s) 619
BstV1I GCAGC 1 cut(s) 416
BstX2I RGATCY 2 cut(s) 208, 853
BstYI RGATCY 2 cut(s) 208, 853
BsuRI GGCC 3 cut(s) 225, 895, 973
BtgI CCRYGG 1 cut(s) 373
BtsCI GGATG 3 cut(s) 14, 329, 743
BtsI GCAGTG 1 cut(s) 883
BtsIMutI CAGTG 1 cut(s) 883
Cac8I GCNNGC 1 cut(s) 342
CciI TCATGA 1 cut(s) 649
Csp6I GTAC 7 cut(s) 32, 72, 533, 579, 588, 597, 928
CviAII CATG 7 cut(s) 86, 364, 408, 443, 480, 650, 975
CviQI GTAC 7 cut(s) 32, 72, 533, 579, 588, 597, 928
DdeI CTNAG 1 cut(s) 205
DpnI GATC 6 cut(s) 22, 105, 210, 555, 855, 924
DpnII GATC 6 cut(s) 20, 103, 208, 553, 853, 922
EaeI YGGCCR 1 cut(s) 223
Eam1104I CTCTTC 2 cut(s) 283, 507
EarI CTCTTC 2 cut(s) 283, 507
Eco147I AGGCCT 1 cut(s) 895
Eco31I GGTCTC 1 cut(s) 827
EcoRI GAATTC 3 cut(s) 155, 299, 639
EcoRII CCWGG 1 cut(s) 310
FaeI CATG 7 cut(s) 89, 367, 411, 446, 483, 653, 978
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FatI CATG 7 cut(s) 85, 363, 407, 442, 479, 649, 974
FauNDI CATATG 1 cut(s) 817
FbaI TGATCA 1 cut(s) 922
Fnu4HI GCNGC 2 cut(s) 226, 430
FokI GGATG 3 cut(s) 21, 316, 730
Fsp4HI GCNGC 2 cut(s) 226, 430
FspBI CTAG 4 cut(s) 147, 341, 582, 774
GluI GCNGC 2 cut(s) 226, 430
HaeIII GGCC 3 cut(s) 225, 895, 973
HapII CCGG 1 cut(s) 837
Hin1II CATG 7 cut(s) 89, 367, 411, 446, 483, 653, 978
HinfI GANTC 3 cut(s) 360, 543, 731
HpaII CCGG 1 cut(s) 837
HphI GGTGA 3 cut(s) 731, 914, 926
Hpy188I TCNGA 5 cut(s) 28, 43, 208, 279, 381
Hpy188III TCNNGA 2 cut(s) 650, 827
HpyCH4III ACNGT 3 cut(s) 324, 377, 601
HpyCH4V TGCA 5 cut(s) 171, 474, 483, 627, 950
HpyF10VI GCNNNNNNNGC 2 cut(s) 480, 847
HpyF3I CTNAG 1 cut(s) 205
Hsp92II CATG 7 cut(s) 89, 367, 411, 446, 483, 653, 978
KpnI GGTACC 1 cut(s) 591
Ksp22I TGATCA 1 cut(s) 922
Kzo9I GATC 6 cut(s) 20, 103, 208, 553, 853, 922
LguI GCTCTTC 1 cut(s) 507
LmnI GCTCC 1 cut(s) 349
Lsp1109I GCAGC 1 cut(s) 416
LweI GCATC 1 cut(s) 937
MaeI CTAG 4 cut(s) 147, 341, 582, 774
MaeIII GTNAC 2 cut(s) 907, 914
MalI GATC 6 cut(s) 22, 105, 210, 555, 855, 924
MboI GATC 6 cut(s) 20, 103, 208, 553, 853, 922
MboII GAAGA 5 cut(s) 230, 300, 494, 584, 635
MfeI CAATTG 1 cut(s) 735
MflI RGATCY 2 cut(s) 208, 853
MluCI AATT 6 cut(s) 155, 299, 639, 686, 735, 932
MlyI GAGTC 2 cut(s) 354, 740
MmeI TCCRAC 1 cut(s) 520
MseI TTAA 4 cut(s) 93, 603, 609, 759
MspCI CTTAAG 1 cut(s) 92
MspI CCGG 1 cut(s) 837
MspR9I CCNGG 2 cut(s) 312, 838
MunI CAATTG 1 cut(s) 735
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 480, 847
NciI CCSGG 1 cut(s) 838
NdeI CATATG 1 cut(s) 817
NdeII GATC 6 cut(s) 20, 103, 208, 553, 853, 922
NheI GCTAGC 1 cut(s) 340
NlaIII CATG 7 cut(s) 89, 367, 411, 446, 483, 653, 978
NlaIV GGNNCC 2 cut(s) 589, 855
NmuCI GTSAC 2 cut(s) 907, 914
NspI RCATGY 2 cut(s) 89, 411
NspV TTCGAA 2 cut(s) 354, 683
PagI TCATGA 1 cut(s) 649
PceI AGGCCT 1 cut(s) 895
PciI ACATGT 2 cut(s) 85, 407
PciSI GCTCTTC 1 cut(s) 507
PfeI GAWTC 1 cut(s) 543
PflMI CCANNNNNTGG 1 cut(s) 189
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 2 cut(s) 227, 431
PleI GAGTC 2 cut(s) 354, 739
PpsI GAGTC 2 cut(s) 354, 739
PscI ACATGT 2 cut(s) 85, 407
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 589, 855
PsuI RGATCY 2 cut(s) 208, 853
RsaI GTAC 7 cut(s) 33, 73, 534, 580, 589, 598, 929
RsaNI GTAC 7 cut(s) 32, 72, 533, 579, 588, 597, 928
SapI GCTCTTC 1 cut(s) 507
SaqAI TTAA 4 cut(s) 93, 603, 609, 759
SatI GCNGC 2 cut(s) 226, 430
Sau3AI GATC 6 cut(s) 20, 103, 208, 553, 853, 922
ScaI AGTACT 2 cut(s) 580, 598
SchI GAGTC 2 cut(s) 354, 740
ScrFI CCNGG 2 cut(s) 312, 838
SetI ASST 4 cut(s) 346, 626, 633, 702
SfaNI GCATC 1 cut(s) 937
SfcI CTRYAG 1 cut(s) 619
SfuI TTCGAA 2 cut(s) 354, 683
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
SpeI ACTAGT 1 cut(s) 581
Sse9I AATT 6 cut(s) 155, 299, 639, 686, 735, 932
SseBI AGGCCT 1 cut(s) 895
SsiI CCGC 1 cut(s) 226
SspI AATATT 1 cut(s) 607
SspMI CTAG 4 cut(s) 147, 341, 582, 774
StuI AGGCCT 1 cut(s) 895
StyD4I CCNGG 2 cut(s) 310, 836
TaaI ACNGT 3 cut(s) 324, 377, 601
TaqI TCGA 4 cut(s) 354, 439, 683, 867
TasI AATT 6 cut(s) 155, 299, 639, 686, 735, 932
TatI WGTACW 4 cut(s) 71, 578, 596, 927
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 1 cut(s) 543
Tru1I TTAA 4 cut(s) 93, 603, 609, 759
Tru9I TTAA 4 cut(s) 93, 603, 609, 759
TscAI CASTG 1 cut(s) 883
TseFI GTSAC 2 cut(s) 907, 914
TseI GCWGC 1 cut(s) 429
Tsp45I GTSAC 2 cut(s) 907, 914
TspDTI ATGAA 3 cut(s) 239, 535, 679
TspGWI ACGGA 1 cut(s) 846
TspRI CASTG 1 cut(s) 883
Van91I CCANNNNNTGG 1 cut(s) 189
Vha464I CTTAAG 1 cut(s) 92
XapI RAATTY 5 cut(s) 155, 299, 639, 686, 932
XceI RCATGY 2 cut(s) 89, 411
XspI CTAG 4 cut(s) 147, 341, 582, 774
ZrmI AGTACT 2 cut(s) 580, 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.