Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000432.1

Orthogroup ID

OG0000668

Physical Location & Seq

Genomic Coordinates Reverse (-)

259235 .. 260756

Gene Structure 1522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000432.1_g000074.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgcatgttatgattcatgtaggtcatggagagactgcagatggagtccttgttgatcaggatttgaacgaaccaaccatgggagaaaaacttgctagtttgaatatagtacctgatgatagagtggagagccaaaataaagaaggctcttctctccatgcaaagcctccgagtgcagactctgttcatattttgcttaagcaagcactacacgctgatgaccgtgcccttctattcgagtgcttatacacccaagatgagaaggtcattgcaaagtctgtctctcaattgaatccagctggtgttttgaagctcttacaatctctcatatctcttattgagtcaaggggtgcaattttggcatgtgcacttccatggctaagaagtctacttcttcaacacgcaagtgggatagtgtctcaagaatcttctttaagtgccttgaactctttatatcagctcattgagtccagagtttctacttttcagtcagctcttcaactatcaagtgttttagacttgctgtatacaggggttgttgatgatttggatgatgagaatggcactacaggtccagttatttacgaggacaaagatagtgatgaagaggaatctgaggacgccatggagactgatcaagacagtgaagatggtgaggatttggatgcagaacttggtggtgttagcgactttgaaggaattgaaggacttgatgacttgagcgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12

Protein Analysis

242

Amino Acids

26.13

Weight (kDa)

4.08

Isoelectric Point (pI)

57.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15420 AT1G15420
fragaria_vesca	FvH4_3g30171 FvH4_3g44471 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44510 FvH4_7g12841
malus_domestica	MD12G1094900.v1.1 MD14G1090800.v1.1 MD15G1387900.v1.1 MD15G1388000.v1.1
prunus_persica	Prupe.6G012700_v2.0.a1
pyrus_communis	pycom15g34820
rosa_chinensis	RchiOBHm_Chr1g0331681 RchiOBHm_Chr5g0081171 RchiOBHm_Chr5g0081181 RchiOBHm_Chr5g0081211
rosa_laevigata	RLG00000030438 RLG00000030441 RLG00000030443 RLG00000030447 RLG00000036915 RLG00000036917 RLG00000036919
rosa_multiflora	Rmu_sc0005044.1_g000010 Rmu_sc0005044.1_g000012 Rmu_sc0007768.1_g000001 Rmu_sc0020106.1_g000001 Rmu_ssc0000432.1_g000071 Rmu_ssc0000432.1_g000072 Rmu_ssc0000432.1_g000074 Rmu_ssc0000432.1_g000076 Rmu_ssc0000432.1_g000077
rosa_roxburghii	Rroxscaffold_1G00002290 Rroxscaffold_4G00323980
rosa_rugosa	Rorug01G0031400 Rorug01G0031500 Rorug05G0473700 Rorug05G0473800 Rorug05G0473900 Rorug05G0474000 Rorug05G0474100 Rorug05G0474200 Rorug05G0474400 Rorug05G0474700
rosa_samantha	Rh1AG119200 Rh1BG040400 Rh1CG045400 Rh1CG114200 Rh1CG114300 Rh1CG221300 Rh1DG050000 Rh1DG124400 Rh1DG124600 Rh5AG526300 Rh5AG526500 Rh5BG550600 Rh5CG573500 Rh5DG560300 Rh5DG560700
rosa_wichuraiana	Rw1G009620 Rw1G009630 Rw5G048900 Rw5G048910 Rw5G048940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	388, 527
AcyI	GRCGYC	1 cut(s)	621
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	80
AflII	CTTAAG	1 cut(s)	197
AgsI	TTSAA	9 cut(s)	67, 103, 292, 310, 398, 445, 500, 695, 704
AleI	CACNNNNGTG	1 cut(s)	405
AluBI	AGCT	4 cut(s)	299, 313, 460, 494
AluI	AGCT	4 cut(s)	299, 313, 460, 494
Alw21I	GWGCWC	1 cut(s)	370
Alw26I	GTCTC	4 cut(s)	26, 286, 423, 623
Alw44I	GTGCAC	1 cut(s)	366
AlwNI	CAGNNNCTG	1 cut(s)	182
ApaLI	GTGCAC	1 cut(s)	366
AspS9I	GGNCC	1 cut(s)	572
AsuHPI	GGTGA	1 cut(s)	665
AvaII	GGWCC	1 cut(s)	572
BaeGI	GKGCMC	2 cut(s)	229, 370
Bbv12I	GWGCWC	1 cut(s)	370
BccI	CCATC	2 cut(s)	35, 644
BclI	TGATCA	2 cut(s)	55, 634
BcoDI	GTCTC	4 cut(s)	26, 286, 423, 623
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	2 cut(s)	36, 567
BfrI	CTTAAG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	572
BmsI	GCATC	1 cut(s)	655
BpuEI	CTTGAG	1 cut(s)	405
BsaHI	GRCGYC	1 cut(s)	621
BsaJI	CCNNGG	3 cut(s)	78, 374, 624
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	575
Bse3DI	GCAATG	1 cut(s)	267
BseDI	CCNNGG	3 cut(s)	78, 374, 624
BseGI	GGATG	2 cut(s)	556, 670
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	1 cut(s)	575
BseSI	GKGCMC	2 cut(s)	229, 370
BsgI	GTGCAG	1 cut(s)	195
BsiHKAI	GWGCWC	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	4 cut(s)	26, 286, 423, 623
Bsp1286I	GDGCHC	2 cut(s)	229, 370
Bsp143I	GATC	2 cut(s)	55, 634
Bsp19I	CCATGG	3 cut(s)	78, 374, 624
BspCNI	CTCAG	1 cut(s)	607
BspMAI	CTGCAG	1 cut(s)	40
BspQI	GCTCTTC	2 cut(s)	154, 501
BspTI	CTTAAG	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	575
BssECI	CCNNGG	3 cut(s)	78, 374, 624
BssMI	GATC	2 cut(s)	55, 634
BssNAI	GTATAC	1 cut(s)	528
BssNI	GRCGYC	1 cut(s)	621
BssT1I	CCWWGG	3 cut(s)	78, 374, 624
Bst1107I	GTATAC	1 cut(s)	528
Bst4CI	ACNGT	2 cut(s)	224, 644
Bst6I	CTCTTC	3 cut(s)	154, 501, 600
BstACI	GRCGYC	1 cut(s)	621
BstAFI	CTTAAG	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	380, 615
BstDSI	CCRYGG	3 cut(s)	78, 374, 624
BstF5I	GGATG	2 cut(s)	556, 670
BstKTI	GATC	2 cut(s)	58, 637
BstMAI	GTCTC	4 cut(s)	26, 286, 423, 623
BstMBI	GATC	2 cut(s)	55, 634
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 359
BstNSI	RCATGY	2 cut(s)	8, 366
BstSFI	CTRYAG	2 cut(s)	36, 567
BstSLI	GKGCMC	2 cut(s)	229, 370
BstZ17I	GTATAC	1 cut(s)	528
BtgI	CCRYGG	3 cut(s)	78, 374, 624
BtsCI	GGATG	2 cut(s)	556, 670
BtsIMutI	CAGTG	1 cut(s)	649
Cac8I	GCNNGC	1 cut(s)	204
CaiI	CAGNNNCTG	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	572
CseI	GACGC	1 cut(s)	629
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	8 cut(s)	5, 17, 26, 79, 158, 363, 375, 625
CviJI	RGCY	8 cut(s)	132, 147, 166, 299, 313, 379, 460, 494
CviKI_1	RGCY	8 cut(s)	132, 147, 166, 299, 313, 379, 460, 494
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	2 cut(s)	380, 615
DpnI	GATC	2 cut(s)	57, 636
DpnII	GATC	2 cut(s)	55, 634
Eam1104I	CTCTTC	3 cut(s)	154, 501, 600
EarI	CTCTTC	3 cut(s)	154, 501, 600
Eco130I	CCWWGG	3 cut(s)	78, 374, 624
Eco47I	GGWCC	1 cut(s)	572
EcoT14I	CCWWGG	3 cut(s)	78, 374, 624
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	78, 374, 624
FaeI	CATG	8 cut(s)	8, 20, 29, 82, 161, 366, 378, 628
FatI	CATG	8 cut(s)	4, 16, 25, 78, 157, 362, 374, 624
FbaI	TGATCA	2 cut(s)	55, 634
FblI	GTMKAC	2 cut(s)	388, 527
FokI	GGATG	2 cut(s)	563, 677
FspBI	CTAG	1 cut(s)	96
HgaI	GACGC	1 cut(s)	629
Hin1I	GRCGYC	1 cut(s)	621
Hin1II	CATG	8 cut(s)	8, 20, 29, 82, 161, 366, 378, 628
HinfI	GANTC	8 cut(s)	13, 45, 179, 292, 341, 425, 467, 611
HphI	GGTGA	1 cut(s)	665
Hpy166II	GTNNAC	3 cut(s)	368, 389, 528
Hpy188I	TCNGA	2 cut(s)	171, 616
Hpy188III	TCNNGA	4 cut(s)	59, 422, 471, 638
Hpy8I	GTNNAC	3 cut(s)	368, 389, 528
HpyAV	CCTTC	5 cut(s)	137, 239, 256, 689, 698
HpyCH4III	ACNGT	2 cut(s)	224, 644
HpyCH4V	TGCA	8 cut(s)	4, 38, 161, 176, 272, 353, 368, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 359
HpyF3I	CTNAG	2 cut(s)	380, 615
Hsp92I	GRCGYC	1 cut(s)	621
Hsp92II	CATG	8 cut(s)	8, 20, 29, 82, 161, 366, 378, 628
Ksp22I	TGATCA	2 cut(s)	55, 634
Kzo9I	GATC	2 cut(s)	55, 634
LguI	GCTCTTC	2 cut(s)	154, 501
LpnPI	CCDG	8 cut(s)	44, 126, 285, 309, 484, 516, 555, 588
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	1 cut(s)	96
MalI	GATC	2 cut(s)	57, 636
MboI	GATC	2 cut(s)	55, 634
MboII	GAAGA	6 cut(s)	141, 386, 420, 488, 617, 659
MfeI	CAATTG	1 cut(s)	287
MhlI	GDGCHC	2 cut(s)	229, 370
MluCI	AATT	3 cut(s)	287, 354, 699
MlyI	GAGTC	4 cut(s)	54, 173, 350, 476
MnlI	CCTC	5 cut(s)	177, 580, 601, 610, 649
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	198, 434
MslI	CAYNNNNRTG	3 cut(s)	216, 373, 405
MspA1I	CMGCKG	1 cut(s)	299
MspCI	CTTAAG	1 cut(s)	197
MunI	CAATTG	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	212, 359
NcoI	CCATGG	3 cut(s)	78, 374, 624
NdeII	GATC	2 cut(s)	55, 634
NlaIII	CATG	8 cut(s)	8, 20, 29, 82, 161, 366, 378, 628
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 366
OliI	CACNNNNGTG	1 cut(s)	405
PciSI	GCTCTTC	2 cut(s)	154, 501
PfeI	GAWTC	4 cut(s)	13, 292, 425, 611
PleI	GAGTC	4 cut(s)	53, 173, 349, 475
PpsI	GAGTC	4 cut(s)	53, 173, 349, 475
PspPI	GGNCC	1 cut(s)	572
PstI	CTGCAG	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	182
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
RseI	CAYNNNNRTG	3 cut(s)	216, 373, 405
SapI	GCTCTTC	2 cut(s)	154, 501
SaqAI	TTAA	2 cut(s)	198, 434
Sau3AI	GATC	2 cut(s)	55, 634
Sau96I	GGNCC	1 cut(s)	572
SchI	GAGTC	4 cut(s)	54, 173, 350, 476
SduI	GDGCHC	2 cut(s)	229, 370
SetI	ASST	8 cut(s)	25, 115, 267, 301, 315, 462, 496, 574
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	2 cut(s)	36, 567
SinI	GGWCC	1 cut(s)	572
SmiMI	CAYNNNNRTG	3 cut(s)	216, 373, 405
SmlI	CTYRAG	3 cut(s)	197, 420, 718
SmoI	CTYRAG	3 cut(s)	197, 420, 718
Sse9I	AATT	3 cut(s)	287, 354, 699
SspMI	CTAG	1 cut(s)	96
StyI	CCWWGG	3 cut(s)	78, 374, 624
TaaI	ACNGT	2 cut(s)	224, 644
TaqI	TCGA	1 cut(s)	237
TasI	AATT	3 cut(s)	287, 354, 699
TfiI	GAWTC	4 cut(s)	13, 292, 425, 611
Tru1I	TTAA	2 cut(s)	198, 434
Tru9I	TTAA	2 cut(s)	198, 434
TscAI	CASTG	1 cut(s)	649
TspDTI	ATGAA	3 cut(s)	5, 176, 618
TspRI	CASTG	1 cut(s)	649
Vha464I	CTTAAG	1 cut(s)	197
VneI	GTGCAC	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	572
XceI	RCATGY	2 cut(s)	8, 366
XmiI	GTMKAC	2 cut(s)	388, 527
XspI	CTAG	1 cut(s)	96
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.