Rorug05G0473900

Dip2/Utp12 Family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000668
Physical Location & Seq
Forward (+)
65130543 .. 65131184
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0473900.1

Sequence Viewer

Length: 642 bp
ATGTTTGAGGAAATGAGGATCAAGTTGATGAAGAGGATTCACATTAGGAGGGACAAGATTATGAAGGTTCAGGATACCATCTGCCCCAAACCAAGAGAAATACTGGAGAAGAACAAAGTGAAAGCTGCCACAGACTGCATCCCATTTGGTTCAGGAAGCTCAAAAATCGAAGTGGAAAGCATTGGAGGAGCAAGATATATAGTTGATATTGAGAGAAGGAGTTGTGCTTGTAGGAGATGGGATTTGAGTGGGATCCCTTGCAAACATGCTATATCTGCCATCCACTACATGAGGGAAAAACCTGAGGATTATGTTGATACAGCCTACTGGACAAAGACATACTTGGCCATCTACTCAAACACCATCAGCCCTGTAAATGGAATCGATCTTTGGGAAAGGACTGATGATGCTGCAATTTTTCCTCCTCAGTACAACAGACAGCCTGGTAGGCCAAAAACCAAGAGAATTAAGGATTCACAAGAGAAAGCTACTGAGGGAACCAAGCTGGGAAGAGTGCAGAAATCATTGAAGTGCAGCAGCTGTGGGGTTTTGGGGCACAATGTGAAGACCTGCCACAGCTTAGATTGCTATTTCATCGAGTCAAATGCTAATTGTATTTTAATCTTGAATGTTTTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Utp12

Protein Analysis

213

Amino Acids

24.32

Weight (kDa)

9.2

Isoelectric Point (pI)

60.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 66 - 95 6.6e-09 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 578
AclWI GGATC 3 cut(s) 26, 247, 260
AcoI YGGCCR 1 cut(s) 345
AdeI CACNNNGTG 1 cut(s) 562
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 1 cut(s) 377
AgsI TTSAA 2 cut(s) 529, 628
AjnI CCWGG 1 cut(s) 442
AjuI GAANNNNNNNTTGG 2 cut(s) 373, 405
AluBI AGCT 6 cut(s) 125, 159, 488, 505, 540, 579
AluI AGCT 6 cut(s) 125, 159, 488, 505, 540, 579
AlwI GGATC 3 cut(s) 26, 247, 260
AlwNI CAGNNNCTG 1 cut(s) 540
AoxI GGCC 2 cut(s) 345, 449
ApeKI GCWGC 4 cut(s) 125, 410, 534, 537
AxyI CCTNAGG 1 cut(s) 303
BaeGI GKGCMC 1 cut(s) 558
BalI TGGCCA 1 cut(s) 347
BamHI GGATCC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 572
BbvI GCAGC 4 cut(s) 112, 397, 546, 549
BccI CCATC 5 cut(s) 86, 231, 287, 356, 371
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 1 cut(s) 444
BciVI GTATCC 1 cut(s) 67
BfuAI ACCTGC 1 cut(s) 578
BfuI GTATCC 1 cut(s) 67
BglI GCCNNNNNGGC 1 cut(s) 448
BisI GCNGC 4 cut(s) 126, 411, 535, 538
BlsI GCNGC 4 cut(s) 127, 412, 536, 539
Bme1390I CCNGG 1 cut(s) 444
BmiI GGNNCC 2 cut(s) 254, 499
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 2 cut(s) 147, 397
BpiI GAAGAC 1 cut(s) 572
BpmI CTGGAG 1 cut(s) 125
Bsa29I ATCGAT 1 cut(s) 384
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse1I ACTGG 2 cut(s) 108, 332
Bse21I CCTNAGG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 444
BseCI ATCGAT 1 cut(s) 384
BseGI GGATG 2 cut(s) 138, 279
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMII CTCAG 3 cut(s) 294, 440, 483
BseNI ACTGG 2 cut(s) 108, 332
BseRI GAGGAG 2 cut(s) 201, 414
BseSI GKGCMC 1 cut(s) 558
BseXI GCAGC 4 cut(s) 112, 397, 546, 549
BseYI CCCAGC 1 cut(s) 505
BsgI GTGCAG 2 cut(s) 536, 553
BshFI GGCC 2 cut(s) 347, 451
BshVI ATCGAT 1 cut(s) 384
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 2 cut(s) 347, 451
Bsp1286I GDGCHC 1 cut(s) 558
Bsp143I GATC 3 cut(s) 18, 252, 385
BspANI GGCC 2 cut(s) 347, 451
BspCNI CTCAG 3 cut(s) 295, 439, 484
BspDI ATCGAT 1 cut(s) 384
BspLI GGNNCC 2 cut(s) 254, 499
BspMI ACCTGC 1 cut(s) 578
BspPI GGATC 3 cut(s) 26, 247, 260
BsrI ACTGG 2 cut(s) 108, 332
BssMI GATC 3 cut(s) 18, 252, 385
Bst2UI CCWGG 1 cut(s) 444
Bst6I CTCTTC 2 cut(s) 26, 505
BstDEI CTNAG 4 cut(s) 303, 426, 492, 580
BstF5I GGATG 2 cut(s) 138, 279
BstKTI GATC 3 cut(s) 21, 255, 388
BstMBI GATC 3 cut(s) 18, 252, 385
BstMWI GCNNNNNNNGC 3 cut(s) 275, 448, 585
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 442
BstSLI GKGCMC 1 cut(s) 558
BstV1I GCAGC 4 cut(s) 112, 397, 546, 549
BstV2I GAAGAC 1 cut(s) 572
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
Bsu15I ATCGAT 1 cut(s) 384
Bsu36I CCTNAGG 1 cut(s) 303
BsuI GTATCC 1 cut(s) 67
BsuRI GGCC 2 cut(s) 347, 451
BsuTUI ATCGAT 1 cut(s) 384
BtsCI GGATG 2 cut(s) 138, 279
BveI ACCTGC 1 cut(s) 578
CaiI CAGNNNCTG 1 cut(s) 540
ClaI ATCGAT 1 cut(s) 384
Csp6I GTAC 1 cut(s) 430
CviAII CATG 2 cut(s) 266, 289
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 4 cut(s) 303, 426, 492, 580
DpnI GATC 3 cut(s) 20, 254, 387
DpnII GATC 3 cut(s) 18, 252, 385
DraIII CACNNNGTG 1 cut(s) 562
EaeI YGGCCR 1 cut(s) 345
Eam1104I CTCTTC 2 cut(s) 26, 505
EarI CTCTTC 2 cut(s) 26, 505
Eco81I CCTNAGG 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 442
FaeI CATG 2 cut(s) 269, 292
FaiI YATR 8 cut(s) 62, 198, 200, 267, 272, 290, 312, 340
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 1 cut(s) 65
FatI CATG 2 cut(s) 265, 288
Fnu4HI GCNGC 4 cut(s) 126, 411, 535, 538
FokI GGATG 2 cut(s) 125, 266
Fsp4HI GCNGC 4 cut(s) 126, 411, 535, 538
GluI GCNGC 4 cut(s) 126, 411, 535, 538
GsaI CCCAGC 1 cut(s) 509
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 2 cut(s) 347, 451
Hin1II CATG 2 cut(s) 269, 292
HinfI GANTC 4 cut(s) 37, 381, 473, 599
Hpy188III TCNNGA 3 cut(s) 71, 153, 625
HpyAV CCTTC 2 cut(s) 58, 210
HpyCH4V TGCA 5 cut(s) 138, 261, 413, 517, 534
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 448, 585
HpyF3I CTNAG 4 cut(s) 303, 426, 492, 580
Hsp92II CATG 2 cut(s) 269, 292
Kzo9I GATC 3 cut(s) 18, 252, 385
LmnI GCTCC 1 cut(s) 188
Lsp1109I GCAGC 4 cut(s) 112, 397, 546, 549
LweI GCATC 2 cut(s) 147, 397
MalI GATC 3 cut(s) 20, 254, 387
MboI GATC 3 cut(s) 18, 252, 385
MboII GAAGA 4 cut(s) 43, 121, 522, 577
MflI RGATCY 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 558
MlsI TGGCCA 1 cut(s) 347
MluCI AATT 3 cut(s) 414, 465, 610
MluNI TGGCCA 1 cut(s) 347
MlyI GAGTC 1 cut(s) 608
MnlI CCTC 9 cut(s) 9, 27, 42, 179, 285, 298, 432, 435, 487
Mox20I TGGCCA 1 cut(s) 347
MscI TGGCCA 1 cut(s) 347
MseI TTAA 2 cut(s) 468, 620
MslI CAYNNNNRTG 1 cut(s) 529
Msp20I TGGCCA 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 540
MspR9I CCNGG 1 cut(s) 444
MvaI CCWGG 1 cut(s) 444
MwoI GCNNNNNNNGC 3 cut(s) 275, 448, 585
NdeII GATC 3 cut(s) 18, 252, 385
NlaIII CATG 2 cut(s) 269, 292
NlaIV GGNNCC 2 cut(s) 254, 499
NspI RCATGY 1 cut(s) 269
PfeI GAWTC 3 cut(s) 37, 381, 473
PkrI GCNGC 4 cut(s) 127, 412, 536, 539
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
Psp6I CCWGG 1 cut(s) 442
PspFI CCCAGC 1 cut(s) 505
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 2 cut(s) 254, 499
PstNI CAGNNNCTG 1 cut(s) 540
PsuI RGATCY 1 cut(s) 252
PvuII CAGCTG 1 cut(s) 540
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
RseI CAYNNNNRTG 1 cut(s) 529
SaqAI TTAA 2 cut(s) 468, 620
SatI GCNGC 4 cut(s) 126, 411, 535, 538
Sau3AI GATC 3 cut(s) 18, 252, 385
SchI GAGTC 1 cut(s) 608
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 1 cut(s) 558
SetI ASST 9 cut(s) 69, 127, 161, 304, 490, 507, 542, 572, 581
SfaNI GCATC 2 cut(s) 147, 397
SmiMI CAYNNNNRTG 1 cut(s) 529
Sse9I AATT 3 cut(s) 414, 465, 610
StyD4I CCNGG 1 cut(s) 442
TaqI TCGA 3 cut(s) 168, 384, 597
TasI AATT 3 cut(s) 414, 465, 610
TatI WGTACW 1 cut(s) 429
TfiI GAWTC 3 cut(s) 37, 381, 473
Tru1I TTAA 2 cut(s) 468, 620
Tru9I TTAA 2 cut(s) 468, 620
TseI GCWGC 4 cut(s) 125, 410, 534, 537
TspDTI ATGAA 3 cut(s) 44, 77, 583
XceI RCATGY 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.