Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020106.1

Orthogroup ID

OG0000668

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1165

Gene Structure 1165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020106.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

gcaaagtctgtctctcaattgaatccagctggtgttttgaagctcttacaatctctcatatcttttattgagtcaaggggtgcaattttggcgtgtgcacttccatggctgagaagtctacttcttcaacacgcaagtgggatagtgtctcaagaatcttctttaagtgccttgaactctttatatcagctcattgagtccagagtttccacttttcagtcagctcttcaactatcaagtgttttagacttgctgtatacaggggttgttgatgatttggatgatgagaatggcactacaggtccagttatttacgaggacaaagatagtgatgaagaggaatctgaggacgccatggagactgatcaagacgatgaagatggtgaggatttggatgcagaacttggtgttgttagcgacttcgaaggaattgaaggacttgatgacttgagcgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12

Protein Analysis

152

Amino Acids

16.37

Weight (kDa)

4.05

Isoelectric Point (pI)

61.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15420 AT1G15420
fragaria_vesca	FvH4_3g30171 FvH4_3g44471 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44510 FvH4_7g12841
malus_domestica	MD12G1094900.v1.1 MD14G1090800.v1.1 MD15G1387900.v1.1 MD15G1388000.v1.1
prunus_persica	Prupe.6G012700_v2.0.a1
pyrus_communis	pycom15g34820
rosa_chinensis	RchiOBHm_Chr1g0331681 RchiOBHm_Chr5g0081171 RchiOBHm_Chr5g0081181 RchiOBHm_Chr5g0081211
rosa_laevigata	RLG00000030438 RLG00000030441 RLG00000030443 RLG00000030447 RLG00000036915 RLG00000036917 RLG00000036919
rosa_multiflora	Rmu_sc0005044.1_g000010 Rmu_sc0005044.1_g000012 Rmu_sc0007768.1_g000001 Rmu_sc0020106.1_g000001 Rmu_ssc0000432.1_g000071 Rmu_ssc0000432.1_g000072 Rmu_ssc0000432.1_g000074 Rmu_ssc0000432.1_g000076 Rmu_ssc0000432.1_g000077
rosa_roxburghii	Rroxscaffold_1G00002290 Rroxscaffold_4G00323980
rosa_rugosa	Rorug01G0031400 Rorug01G0031500 Rorug05G0473700 Rorug05G0473800 Rorug05G0473900 Rorug05G0474000 Rorug05G0474100 Rorug05G0474200 Rorug05G0474400 Rorug05G0474700
rosa_samantha	Rh1AG119200 Rh1BG040400 Rh1CG045400 Rh1CG114200 Rh1CG114300 Rh1CG221300 Rh1DG050000 Rh1DG124400 Rh1DG124600 Rh5AG526300 Rh5AG526500 Rh5BG550600 Rh5CG573500 Rh5DG560300 Rh5DG560700
rosa_wichuraiana	Rw1G009620 Rw1G009630 Rw5G048900 Rw5G048910 Rw5G048940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	118, 257
AcyI	GRCGYC	1 cut(s)	351
AgsI	TTSAA	6 cut(s)	22, 40, 128, 175, 230, 434
AleI	CACNNNNGTG	1 cut(s)	135
AluBI	AGCT	4 cut(s)	29, 43, 190, 224
AluI	AGCT	4 cut(s)	29, 43, 190, 224
Alw21I	GWGCWC	1 cut(s)	100
Alw26I	GTCTC	3 cut(s)	16, 153, 353
Alw44I	GTGCAC	1 cut(s)	96
ApaLI	GTGCAC	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	395
AsuII	TTCGAA	1 cut(s)	423
AvaII	GGWCC	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	100
BccI	CCATC	1 cut(s)	374
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	3 cut(s)	16, 153, 353
BfmI	CTRYAG	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmsI	GCATC	1 cut(s)	385
Bpu14I	TTCGAA	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	104, 354
Bse1I	ACTGG	1 cut(s)	305
BseDI	CCNNGG	2 cut(s)	104, 354
BseGI	GGATG	2 cut(s)	286, 400
BseMII	CTCAG	2 cut(s)	101, 336
BseNI	ACTGG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	100
BsmAI	GTCTC	3 cut(s)	16, 153, 353
Bsp119I	TTCGAA	1 cut(s)	423
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	364
Bsp19I	CCATGG	2 cut(s)	104, 354
BspCNI	CTCAG	2 cut(s)	102, 337
BspQI	GCTCTTC	1 cut(s)	231
BspT104I	TTCGAA	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	104, 354
BssMI	GATC	1 cut(s)	364
BssNAI	GTATAC	1 cut(s)	258
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	2 cut(s)	104, 354
Bst1107I	GTATAC	1 cut(s)	258
Bst6I	CTCTTC	2 cut(s)	231, 330
BstACI	GRCGYC	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	423
BstDEI	CTNAG	2 cut(s)	110, 345
BstDSI	CCRYGG	2 cut(s)	104, 354
BstF5I	GGATG	2 cut(s)	286, 400
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	3 cut(s)	16, 153, 353
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	297
BstSLI	GKGCMC	1 cut(s)	100
BstZ17I	GTATAC	1 cut(s)	258
BtgI	CCRYGG	2 cut(s)	104, 354
BtsCI	GGATG	2 cut(s)	286, 400
Cfr13I	GGNCC	1 cut(s)	302
CseI	GACGC	1 cut(s)	359
CviAII	CATG	2 cut(s)	105, 355
CviJI	RGCY	5 cut(s)	29, 43, 109, 190, 224
CviKI_1	RGCY	5 cut(s)	29, 43, 109, 190, 224
DdeI	CTNAG	2 cut(s)	110, 345
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Eam1104I	CTCTTC	2 cut(s)	231, 330
EarI	CTCTTC	2 cut(s)	231, 330
Eco130I	CCWWGG	2 cut(s)	104, 354
Eco47I	GGWCC	1 cut(s)	302
EcoT14I	CCWWGG	2 cut(s)	104, 354
ErhI	CCWWGG	2 cut(s)	104, 354
FaeI	CATG	2 cut(s)	108, 358
FaiI	YATR	5 cut(s)	59, 106, 184, 258, 356
FatI	CATG	2 cut(s)	104, 354
FbaI	TGATCA	1 cut(s)	364
FblI	GTMKAC	2 cut(s)	118, 257
FokI	GGATG	2 cut(s)	293, 407
HgaI	GACGC	1 cut(s)	359
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	2 cut(s)	108, 358
HinfI	GANTC	5 cut(s)	22, 71, 155, 197, 341
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	3 cut(s)	98, 119, 258
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	3 cut(s)	152, 201, 368
Hpy8I	GTNNAC	3 cut(s)	98, 119, 258
HpyAV	CCTTC	2 cut(s)	419, 428
HpyCH4V	TGCA	3 cut(s)	83, 98, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	110, 345
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	108, 358
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	1 cut(s)	364
LguI	GCTCTTC	1 cut(s)	231
LpnPI	CCDG	6 cut(s)	15, 39, 214, 246, 285, 318
LweI	GCATC	1 cut(s)	385
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	5 cut(s)	116, 150, 218, 347, 389
MfeI	CAATTG	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	3 cut(s)	17, 84, 429
MlyI	GAGTC	2 cut(s)	80, 206
MnlI	CCTC	4 cut(s)	310, 331, 340, 379
MseI	TTAA	1 cut(s)	164
MslI	CAYNNNNRTG	2 cut(s)	103, 135
MspA1I	CMGCKG	1 cut(s)	29
MunI	CAATTG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	89
NcoI	CCATGG	2 cut(s)	104, 354
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	2 cut(s)	108, 358
NspV	TTCGAA	1 cut(s)	423
OliI	CACNNNNGTG	1 cut(s)	135
PciSI	GCTCTTC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	22, 155, 341
PleI	GAGTC	2 cut(s)	79, 205
PpsI	GAGTC	2 cut(s)	79, 205
PspPI	GGNCC	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	29
RseI	CAYNNNNRTG	2 cut(s)	103, 135
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	164
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	2 cut(s)	80, 206
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	5 cut(s)	31, 45, 192, 226, 304
SfaNI	GCATC	1 cut(s)	385
SfcI	CTRYAG	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	423
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	103, 135
SmlI	CTYRAG	2 cut(s)	150, 448
SmoI	CTYRAG	2 cut(s)	150, 448
Sse9I	AATT	3 cut(s)	17, 84, 429
StyI	CCWWGG	2 cut(s)	104, 354
TaqI	TCGA	1 cut(s)	423
TasI	AATT	3 cut(s)	17, 84, 429
TfiI	GAWTC	3 cut(s)	22, 155, 341
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	348, 390
VneI	GTGCAC	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	302
XmiI	GTMKAC	2 cut(s)	118, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.