Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000668

Physical Location & Seq

Genomic Coordinates Reverse (-)

893508 .. 895262

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G012700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAAGAGTAAAAAGGGAAGTAAGAAGCGTGCAGCAGCACCGGATCCAGATCTTCCAACTGTTAAAGACATCGTTGAACTTGGTAATGGAGAGGCTGCAGACGGAGTCCTTGTTGAGGATGATTTGAATGAACTAACCATGGGAGAAAAACTTGAAAGTTTAAATTTATTAGATAATGATGGACCAAAGAGCCAAGATAAAGAAGACTCTTCTCTCAATGCAAAGCCTCCAAGTGCAGACTCTGTTCATATTTTACTTAAACAAGCACTACATGCCGAAGACCGTGCCCTTCTATTAGATTGCTTATACACCCAAGATGAGAAGGTCATTGCAAAGTCTATCTCACTATTGAATCCATCTGGTGTTTTGAAGCTCTTACAATCTCTCATTTCTATTATTCAGTCGAGGGGTGCAATTTTGGCATGTGCACTTCCATGGTTGAGAAGTCTACTTCTTCAACATGCAAGTGGTATAGTGTCCCAAGAATCTTCTTTAAGTGCTTTGAACTCCTTGTATCAGCTCATTGAGTCCAGAGTTTCCACTTTTCAGTCATCTCTTCAACTATCAAGTGTCTTAGACTTACTTTATACAGGGGTACTTGATGATGTGGATGAGACAGGCACCACAATTCCTGTTGTTTATGAGGACAATGATGAGAGTGATGAAGAGGAATCTGAGGATGCCATGGACACCGATCAAGACGATGAAGATGAAGAGGAATCAGATGCAGCACTTGATGGTGTTAGTGATTTTGAAGGAATTGAGAACATAAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12

Protein Analysis

260

Amino Acids

27.99

Weight (kDa)

4.06

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15420 AT1G15420
fragaria_vesca	FvH4_3g30171 FvH4_3g44471 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44510 FvH4_7g12841
malus_domestica	MD12G1094900.v1.1 MD14G1090800.v1.1 MD15G1387900.v1.1 MD15G1388000.v1.1
prunus_persica	Prupe.6G012700_v2.0.a1
pyrus_communis	pycom15g34820
rosa_chinensis	RchiOBHm_Chr1g0331681 RchiOBHm_Chr5g0081171 RchiOBHm_Chr5g0081181 RchiOBHm_Chr5g0081211
rosa_laevigata	RLG00000030438 RLG00000030441 RLG00000030443 RLG00000030447 RLG00000036915 RLG00000036917 RLG00000036919
rosa_multiflora	Rmu_sc0005044.1_g000010 Rmu_sc0005044.1_g000012 Rmu_sc0007768.1_g000001 Rmu_sc0020106.1_g000001 Rmu_ssc0000432.1_g000071 Rmu_ssc0000432.1_g000072 Rmu_ssc0000432.1_g000074 Rmu_ssc0000432.1_g000076 Rmu_ssc0000432.1_g000077
rosa_roxburghii	Rroxscaffold_1G00002290 Rroxscaffold_4G00323980
rosa_rugosa	Rorug01G0031400 Rorug01G0031500 Rorug05G0473700 Rorug05G0473800 Rorug05G0473900 Rorug05G0474000 Rorug05G0474100 Rorug05G0474200 Rorug05G0474400 Rorug05G0474700
rosa_samantha	Rh1AG119200 Rh1BG040400 Rh1CG045400 Rh1CG114200 Rh1CG114300 Rh1CG221300 Rh1DG050000 Rh1DG124400 Rh1DG124600 Rh5AG526300 Rh5AG526500 Rh5BG550600 Rh5CG573500 Rh5DG560300 Rh5DG560700
rosa_wichuraiana	Rw1G009620 Rw1G009630 Rw5G048900 Rw5G048910 Rw5G048940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	620
AccI	GTMKAC	1 cut(s)	448
AclWI	GGATC	2 cut(s)	38, 51
AcsI	RAATTY	1 cut(s)	163
AfaI	GTAC	1 cut(s)	597
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	9 cut(s)	77, 127, 155, 352, 370, 458, 505, 560, 755
AluBI	AGCT	2 cut(s)	373, 520
AluI	AGCT	2 cut(s)	373, 520
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	1 cut(s)	608
Alw44I	GTGCAC	1 cut(s)	426
AlwI	GGATC	2 cut(s)	38, 51
AlwNI	CAGNNNCTG	1 cut(s)	242
ApaLI	GTGCAC	1 cut(s)	426
ApeKI	GCWGC	4 cut(s)	32, 35, 95, 728
ApoI	RAATTY	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	182
BaeGI	GKGCMC	2 cut(s)	289, 430
BamHI	GGATCC	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	620
BbsI	GAAGAC	2 cut(s)	210, 285
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	4 cut(s)	44, 47, 82, 740
BccI	CCATC	3 cut(s)	173, 364, 731
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BcoDI	GTCTC	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	96
BglII	AGATCT	1 cut(s)	49
BisI	GCNGC	4 cut(s)	33, 36, 96, 729
BlsI	GCNGC	4 cut(s)	34, 37, 97, 730
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	45, 622
BmsI	GCATC	2 cut(s)	670, 715
BpiI	GAAGAC	2 cut(s)	210, 285
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	3 cut(s)	138, 434, 684
BsaWI	WCCGGW	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	327
Bse8I	GATNNNNATC	1 cut(s)	48
BseDI	CCNNGG	3 cut(s)	138, 434, 684
BseGI	GGATG	3 cut(s)	124, 616, 685
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	666
BseSI	GKGCMC	2 cut(s)	289, 430
BseXI	GCAGC	4 cut(s)	44, 47, 82, 740
BsgI	GTGCAG	2 cut(s)	51, 255
BshNI	GGYRCC	1 cut(s)	620
BsiHKAI	GWGCWC	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	608
BsmFI	GGGAC	1 cut(s)	463
Bsp1286I	GDGCHC	2 cut(s)	289, 430
Bsp143I	GATC	3 cut(s)	43, 49, 694
Bsp19I	CCATGG	3 cut(s)	138, 434, 684
BspCNI	CTCAG	1 cut(s)	667
BspLI	GGNNCC	2 cut(s)	45, 622
BspMAI	CTGCAG	1 cut(s)	100
BspPI	GGATC	2 cut(s)	38, 51
BspT107I	GGYRCC	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	327
BssECI	CCNNGG	3 cut(s)	138, 434, 684
BssMI	GATC	3 cut(s)	43, 49, 694
BssT1I	CCWWGG	3 cut(s)	138, 434, 684
Bst4CI	ACNGT	2 cut(s)	61, 284
Bst6I	CTCTTC	4 cut(s)	214, 561, 660, 708
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	574, 675
BstDSI	CCRYGG	3 cut(s)	138, 434, 684
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	3 cut(s)	124, 616, 685
BstKTI	GATC	3 cut(s)	46, 52, 697
BstMAI	GTCTC	1 cut(s)	608
BstMBI	GATC	3 cut(s)	43, 49, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 419
BstNSI	RCATGY	3 cut(s)	275, 426, 464
BstSFI	CTRYAG	1 cut(s)	96
BstSLI	GKGCMC	2 cut(s)	289, 430
BstV1I	GCAGC	4 cut(s)	44, 47, 82, 740
BstV2I	GAAGAC	2 cut(s)	210, 285
BstX2I	RGATCY	2 cut(s)	43, 49
BstYI	RGATCY	2 cut(s)	43, 49
BtgI	CCRYGG	3 cut(s)	138, 434, 684
BtsCI	GGATG	3 cut(s)	124, 616, 685
Cac8I	GCNNGC	1 cut(s)	30
CaiI	CAGNNNCTG	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	596
CviAII	CATG	6 cut(s)	139, 272, 423, 435, 461, 685
CviJI	RGCY	5 cut(s)	95, 192, 226, 373, 520
CviKI_1	RGCY	5 cut(s)	95, 192, 226, 373, 520
CviQI	GTAC	1 cut(s)	596
DdeI	CTNAG	2 cut(s)	574, 675
DpnI	GATC	3 cut(s)	45, 51, 696
DpnII	GATC	3 cut(s)	43, 49, 694
DraI	TTTAAA	1 cut(s)	162
Eam1104I	CTCTTC	4 cut(s)	214, 561, 660, 708
EarI	CTCTTC	4 cut(s)	214, 561, 660, 708
Eco130I	CCWWGG	3 cut(s)	138, 434, 684
Eco47I	GGWCC	1 cut(s)	182
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoT14I	CCWWGG	3 cut(s)	138, 434, 684
ErhI	CCWWGG	3 cut(s)	138, 434, 684
FaeI	CATG	6 cut(s)	142, 275, 426, 438, 464, 688
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	6 cut(s)	138, 271, 422, 434, 460, 684
FblI	GTMKAC	1 cut(s)	448
Fnu4HI	GCNGC	4 cut(s)	33, 36, 96, 729
FokI	GGATG	3 cut(s)	131, 623, 692
Fsp4HI	GCNGC	4 cut(s)	33, 36, 96, 729
GluI	GCNGC	4 cut(s)	33, 36, 96, 729
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	6 cut(s)	142, 275, 426, 438, 464, 688
HinfI	GANTC	8 cut(s)	105, 206, 239, 352, 485, 527, 671, 719
HpaII	CCGG	1 cut(s)	41
Hpy166II	GTNNAC	2 cut(s)	428, 449
Hpy188I	TCNGA	2 cut(s)	676, 724
Hpy188III	TCNNGA	3 cut(s)	47, 531, 698
Hpy8I	GTNNAC	2 cut(s)	428, 449
HpyAV	CCTTC	3 cut(s)	299, 316, 749
HpyCH4III	ACNGT	2 cut(s)	61, 284
HpyCH4V	TGCA	9 cut(s)	32, 98, 221, 236, 332, 413, 428, 464, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 419
HpyF3I	CTNAG	2 cut(s)	574, 675
Hsp92II	CATG	6 cut(s)	142, 275, 426, 438, 464, 688
Kzo9I	GATC	3 cut(s)	43, 49, 694
LpnPI	CCDG	7 cut(s)	54, 60, 345, 544, 576, 603, 645
Lsp1109I	GCAGC	4 cut(s)	44, 47, 82, 740
LweI	GCATC	2 cut(s)	670, 715
MalI	GATC	3 cut(s)	45, 51, 696
MboI	GATC	3 cut(s)	43, 49, 694
MflI	RGATCY	2 cut(s)	43, 49
MhlI	GDGCHC	2 cut(s)	289, 430
MluCI	AATT	4 cut(s)	163, 414, 627, 759
MlyI	GAGTC	4 cut(s)	114, 200, 233, 536
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	8 cut(s)	85, 109, 237, 399, 637, 661, 670, 709
MseI	TTAA	4 cut(s)	63, 161, 258, 494
MslI	CAYNNNNRTG	2 cut(s)	433, 465
MspI	CCGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	272, 419
NcoI	CCATGG	3 cut(s)	138, 434, 684
NdeII	GATC	3 cut(s)	43, 49, 694
NlaIII	CATG	6 cut(s)	142, 275, 426, 438, 464, 688
NlaIV	GGNNCC	2 cut(s)	45, 622
NspI	RCATGY	3 cut(s)	275, 426, 464
PfeI	GAWTC	4 cut(s)	352, 485, 671, 719
PflFI	GACNNNGTC	1 cut(s)	104
PkrI	GCNGC	4 cut(s)	34, 37, 97, 730
PleI	GAGTC	4 cut(s)	113, 200, 233, 535
PpsI	GAGTC	4 cut(s)	113, 200, 233, 535
PspN4I	GGNNCC	2 cut(s)	45, 622
PspPI	GGNCC	1 cut(s)	182
PstI	CTGCAG	1 cut(s)	100
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	2 cut(s)	43, 49
PsyI	GACNNNGTC	1 cut(s)	104
RsaI	GTAC	1 cut(s)	597
RsaNI	GTAC	1 cut(s)	596
RseI	CAYNNNNRTG	2 cut(s)	433, 465
SaqAI	TTAA	4 cut(s)	63, 161, 258, 494
SatI	GCNGC	4 cut(s)	33, 36, 96, 729
Sau3AI	GATC	3 cut(s)	43, 49, 694
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	4 cut(s)	114, 200, 233, 536
SduI	GDGCHC	2 cut(s)	289, 430
SetI	ASST	3 cut(s)	327, 375, 522
SfaNI	GCATC	2 cut(s)	670, 715
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	2 cut(s)	433, 465
Sse9I	AATT	4 cut(s)	163, 414, 627, 759
StyI	CCWWGG	3 cut(s)	138, 434, 684
TaaI	ACNGT	2 cut(s)	61, 284
TaqI	TCGA	1 cut(s)	404
TasI	AATT	4 cut(s)	163, 414, 627, 759
TfiI	GAWTC	4 cut(s)	352, 485, 671, 719
Tru1I	TTAA	4 cut(s)	63, 161, 258, 494
Tru9I	TTAA	4 cut(s)	63, 161, 258, 494
TseI	GCWGC	4 cut(s)	32, 35, 95, 728
TspDTI	ATGAA	6 cut(s)	17, 144, 236, 678, 720, 726
TspGWI	ACGGA	1 cut(s)	117
Tth111I	GACNNNGTC	1 cut(s)	104
VneI	GTGCAC	1 cut(s)	426
VpaK11BI	GGWCC	1 cut(s)	182
XagI	CCTNNNNNAGG	1 cut(s)	113
XapI	RAATTY	1 cut(s)	163
XceI	RCATGY	3 cut(s)	275, 426, 464
XmiI	GTMKAC	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.