Rh1CG114200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000668
Physical Location & Seq
Forward (+)
22991400 .. 22998034
6635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG114200.1

Sequence Viewer

Length: 1080 bp
ATGAAGACTAAAAAGTCAAGTAAGAAGGGCGCAGCACGGGAGCTAGATAGTCCGGCTATTAAAGACAAGGTTGAAATTGACCAAAGTGATTTCTATATTTGCAATCCATGCATAAGGCAATGGATTGCTCTTCCTCCCACCACTCGACGTCGCACGAATGTACTAGTTGGATTCATCTGTGATCACTACTACGAGGAGGAAGATGCTACTAATGGAACCAATAGTACTGTTAATACTAAAAAGGACTACAGGTGCAAGGTTGTGAGAATTCTTCCTCAAGATTTATCTAAACTTTTTTACAGTCGTTGTTCCAAATTCATTGTTAAGATATTCTCTTTTGAGACTGGTGAATGGAGAGAGTCAATTGTATCATCCCCACGAAGCATTGGGTTTGGACCTGCTACTAGCGTTGCTTACAATGGAATGTTGTATTGGACATATAGGGGCCAGAGCCAGACCGGGCTTATTGGGTTGGATCCTTTTGTGATCGGCAATGGCAGTGCTAGTGGTGGTAACCCTAATGGTGGTGAGATTGTTGACGATGATCATTACCAATTTCGTCTCTTTGATGCAGTTGATATTGATTTAGACATGCCATGTATATGTATGCGTCGAGGGCGTCTGCAAATGTGGGCCCACTATGGCCGGAACGCTGATTTTGCGGTTTGGGAGTTAACAGGTGATGATGATCTTGGATCAACTGACGAGTTCTATTTGAAAAATGTGACTGTTTATCCAAACTTTACCACCTGTGAAGTTTATACAAATAATGTTTTTCTTCTATCTTTGGACCTGGATGATGAGGATATCTTTTATGTAAAAGGGTATGATGGCTGTTTCCGGAACAAATACTATTTCATGTACAACATTTGTACAAGAAAGTGGTCAAAAGTAGCTAGCACCAAGCATGTTGAAGACGATCATCTCTTTCGATTGGTGCTCCCATGGTGGCCAACACCACTTCGTAGACTACCTGTGGTTGAAGAATTACCCATGCCATGTCAAGAAGGTCAAGTGAAACCGTCCTCCAGATCTGTGATTTCGACGACTCCGGCAACCTGGCAAGGTGTTTGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

359

Amino Acids

41.13

Weight (kDa)

5.84

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 25 - 155 7.9e-08 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AatII GACGTC 1 cut(s) 151
Acc36I ACCTGC 1 cut(s) 406
AccI GTMKAC 1 cut(s) 967
AccIII TCCGGA 1 cut(s) 840
AciI CCGC 1 cut(s) 662
AclWI GGATC 3 cut(s) 470, 483, 703
AcoI YGGCCR 2 cut(s) 643, 950
AcsI RAATTY 2 cut(s) 267, 314
AcyI GRCGYC 2 cut(s) 148, 619
AfaI GTAC 4 cut(s) 162, 226, 863, 874
AfiI CCNNNNNNNGG 1 cut(s) 524
AgsI TTSAA 4 cut(s) 74, 718, 914, 983
AhlI ACTAGT 1 cut(s) 163
AjnI CCWGG 2 cut(s) 792, 1058
AjuI GAANNNNNNNTTGG 2 cut(s) 415, 447
AluBI AGCT 2 cut(s) 43, 896
AluI AGCT 2 cut(s) 43, 896
Alw21I GWGCWC 1 cut(s) 942
Alw26I GTCTC 2 cut(s) 335, 566
AlwI GGATC 3 cut(s) 470, 483, 703
Aor13HI TCCGGA 1 cut(s) 840
AoxI GGCC 4 cut(s) 445, 633, 643, 950
ApaI GGGCCC 1 cut(s) 637
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 2 cut(s) 267, 314
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 5 cut(s) 395, 445, 633, 634, 790
AsuC2I CCSGG 1 cut(s) 460
AsuHPI GGTGA 3 cut(s) 359, 539, 692
AsuNHI GCTAGC 1 cut(s) 896
AvaII GGWCC 2 cut(s) 395, 790
BaeGI GKGCMC 1 cut(s) 637
BalI TGGCCA 1 cut(s) 952
BamHI GGATCC 1 cut(s) 475
BanII GRGCYC 1 cut(s) 637
BbsI GAAGAC 2 cut(s) 11, 921
Bbv12I GWGCWC 1 cut(s) 942
BbvI GCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 824
BciT130I CCWGG 2 cut(s) 794, 1060
BclI TGATCA 2 cut(s) 181, 544
BcnI CCSGG 1 cut(s) 460
BcoDI GTCTC 2 cut(s) 335, 566
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 5 cut(s) 44, 164, 405, 504, 897
BfmI CTRYAG 1 cut(s) 247
BfuAI ACCTGC 1 cut(s) 406
BglII AGATCT 1 cut(s) 1031
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
BmcAI AGTACT 1 cut(s) 226
Bme1390I CCNGG 3 cut(s) 460, 794, 1060
Bme18I GGWCC 2 cut(s) 395, 790
BmgT120I GGNCC 5 cut(s) 395, 445, 633, 634, 790
BmiI GGNNCC 4 cut(s) 217, 446, 477, 635
BmrFI CCNGG 3 cut(s) 460, 794, 1060
BmsI GCATC 2 cut(s) 193, 559
BmtI GCTAGC 1 cut(s) 900
BpiI GAAGAC 2 cut(s) 11, 921
BpmI CTGGAG 1 cut(s) 1012
BpuEI CTTGAG 1 cut(s) 261
BpuMI CCSGG 1 cut(s) 460
BsaBI GATNNNNATC 1 cut(s) 687
BsaHI GRCGYC 2 cut(s) 148, 619
BsaJI CCNNGG 1 cut(s) 944
BsaWI WCCGGW 1 cut(s) 840
Bsc4I CCNNNNNNNGG 1 cut(s) 524
Bse1I ACTGG 1 cut(s) 349
Bse3DI GCAATG 2 cut(s) 125, 499
Bse8I GATNNNNATC 1 cut(s) 687
BseAI TCCGGA 1 cut(s) 840
BseBI CCWGG 2 cut(s) 794, 1060
BseDI CCNNGG 1 cut(s) 944
BseGI GGATG 2 cut(s) 371, 802
BseJI GATNNNNATC 1 cut(s) 687
BseLI CCNNNNNNNGG 1 cut(s) 524
BseMI GCAATG 2 cut(s) 125, 499
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 209
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 1 cut(s) 44
BshFI GGCC 4 cut(s) 447, 635, 645, 952
BsiHKAI GWGCWC 1 cut(s) 942
BsiSI CCGG 5 cut(s) 53, 459, 646, 841, 1052
BslI CCNNNNNNNGG 1 cut(s) 524
BsmAI GTCTC 2 cut(s) 335, 566
BsmBI CGTCTC 1 cut(s) 566
BsnI GGCC 4 cut(s) 447, 635, 645, 952
Bsp120I GGGCCC 1 cut(s) 633
Bsp1286I GDGCHC 2 cut(s) 637, 942
Bsp13I TCCGGA 1 cut(s) 840
Bsp1407I TGTACA 2 cut(s) 861, 872
Bsp143I GATC 8 cut(s) 181, 475, 486, 544, 688, 695, 919, 1031
Bsp19I CCATGG 1 cut(s) 944
BspACI CCGC 1 cut(s) 662
BspANI GGCC 4 cut(s) 447, 635, 645, 952
BspEI TCCGGA 1 cut(s) 840
BspLI GGNNCC 4 cut(s) 217, 446, 477, 635
BspMI ACCTGC 1 cut(s) 406
BspOI GCTAGC 1 cut(s) 900
BspPI GGATC 3 cut(s) 470, 483, 703
BspQI GCTCTTC 1 cut(s) 135
BsrDI GCAATG 2 cut(s) 125, 499
BsrGI TGTACA 2 cut(s) 861, 872
BsrI ACTGG 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 944
BssMI GATC 8 cut(s) 181, 475, 486, 544, 688, 695, 919, 1031
BssNI GRCGYC 2 cut(s) 148, 619
BssT1I CCWWGG 1 cut(s) 944
Bst2UI CCWGG 2 cut(s) 794, 1060
Bst4CI ACNGT 4 cut(s) 229, 302, 730, 1023
Bst6I CTCTTC 1 cut(s) 135
BstACI GRCGYC 2 cut(s) 148, 619
BstAPI GCANNNNNTGC 1 cut(s) 108
BstAUI TGTACA 2 cut(s) 861, 872
BstC8I GCNNGC 1 cut(s) 898
BstDSI CCRYGG 1 cut(s) 944
BstEII GGTNACC 1 cut(s) 512
BstF5I GGATG 2 cut(s) 371, 802
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 8 cut(s) 184, 478, 489, 547, 691, 698, 922, 1034
BstMAI GTCTC 2 cut(s) 335, 566
BstMBI GATC 8 cut(s) 181, 475, 486, 544, 688, 695, 919, 1031
BstMWI GCNNNNNNNGC 3 cut(s) 108, 616, 659
BstNI CCWGG 2 cut(s) 794, 1060
BstNSI RCATGY 2 cut(s) 595, 911
BstPI GGTNACC 1 cut(s) 512
BstSCI CCNGG 3 cut(s) 458, 792, 1058
BstSFI CTRYAG 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 637
BstV1I GCAGC 1 cut(s) 44
BstV2I GAAGAC 2 cut(s) 11, 921
BstX2I RGATCY 2 cut(s) 475, 1031
BstYI RGATCY 2 cut(s) 475, 1031
BsuRI GGCC 4 cut(s) 447, 635, 645, 952
BtgI CCRYGG 1 cut(s) 944
BtsCI GGATG 2 cut(s) 371, 802
BtsI GCAGTG 1 cut(s) 505
BtsIMutI CAGTG 1 cut(s) 505
BveI ACCTGC 1 cut(s) 406
Cac8I GCNNGC 1 cut(s) 898
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 5 cut(s) 395, 445, 633, 634, 790
CseI GACGC 2 cut(s) 599, 608
Csp6I GTAC 4 cut(s) 161, 225, 862, 873
CviAII CATG 8 cut(s) 108, 592, 597, 859, 908, 945, 994, 999
CviQI GTAC 4 cut(s) 161, 225, 862, 873
DpnI GATC 8 cut(s) 183, 477, 488, 546, 690, 697, 921, 1033
DpnII GATC 8 cut(s) 181, 475, 486, 544, 688, 695, 919, 1031
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 2 cut(s) 643, 950
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 944
Eco24I GRGCYC 1 cut(s) 637
Eco32I GATATC 1 cut(s) 808
Eco47I GGWCC 2 cut(s) 395, 790
Eco91I GGTNACC 1 cut(s) 512
EcoO65I GGTNACC 1 cut(s) 512
EcoRI GAATTC 1 cut(s) 267
EcoRII CCWGG 2 cut(s) 792, 1058
EcoRV GATATC 1 cut(s) 808
EcoT14I CCWWGG 1 cut(s) 944
EcoT22I ATGCAT 1 cut(s) 113
EcoT38I GRGCYC 1 cut(s) 637
ErhI CCWWGG 1 cut(s) 944
Esp3I CGTCTC 1 cut(s) 566
FaeI CATG 8 cut(s) 111, 595, 600, 862, 911, 948, 997, 1002
FatI CATG 8 cut(s) 107, 591, 596, 858, 907, 944, 993, 998
FbaI TGATCA 2 cut(s) 181, 544
FblI GTMKAC 1 cut(s) 967
Fnu4HI GCNGC 1 cut(s) 33
FokI GGATG 2 cut(s) 358, 809
FriOI GRGCYC 1 cut(s) 637
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 5 cut(s) 44, 164, 405, 504, 897
GlaI GCGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 1012
HaeIII GGCC 4 cut(s) 447, 635, 645, 952
HapII CCGG 5 cut(s) 53, 459, 646, 841, 1052
HgaI GACGC 2 cut(s) 599, 608
HhaI GCGC 1 cut(s) 32
Hin1I GRCGYC 2 cut(s) 148, 619
Hin1II CATG 8 cut(s) 111, 595, 600, 862, 911, 948, 997, 1002
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 2 cut(s) 538, 675
HindII GTYRAC 2 cut(s) 538, 675
HinfI GANTC 3 cut(s) 171, 359, 1048
HpaI GTTAAC 1 cut(s) 675
HpaII CCGG 5 cut(s) 53, 459, 646, 841, 1052
HphI GGTGA 3 cut(s) 359, 539, 692
Hpy166II GTNNAC 3 cut(s) 538, 675, 968
Hpy188III TCNNGA 4 cut(s) 278, 841, 1004, 1029
Hpy8I GTNNAC 3 cut(s) 538, 675, 968
Hpy99I CGWCG 4 cut(s) 150, 153, 615, 1048
HpyAV CCTTC 2 cut(s) 19, 1001
HpyCH4III ACNGT 4 cut(s) 229, 302, 730, 1023
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 5 cut(s) 102, 111, 255, 572, 625
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 616, 659
HpySE526I ACGT 1 cut(s) 148
Hsp92I GRCGYC 2 cut(s) 148, 619
Hsp92II CATG 8 cut(s) 111, 595, 600, 862, 911, 948, 997, 1002
HspAI GCGC 1 cut(s) 30
Kpn2I TCCGGA 1 cut(s) 840
Ksp22I TGATCA 2 cut(s) 181, 544
KspAI GTTAAC 1 cut(s) 675
Kzo9I GATC 8 cut(s) 181, 475, 486, 544, 688, 695, 919, 1031
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 40, 945
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 2 cut(s) 193, 559
MaeI CTAG 5 cut(s) 44, 164, 405, 504, 897
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 3 cut(s) 512, 724, 1073
MalI GATC 8 cut(s) 183, 477, 488, 546, 690, 697, 921, 1033
MboI GATC 8 cut(s) 181, 475, 486, 544, 688, 695, 919, 1031
MboII GAAGA 7 cut(s) 16, 122, 212, 263, 770, 926, 995
MfeI CAATTG 1 cut(s) 363
MflI RGATCY 2 cut(s) 475, 1031
MhlI GDGCHC 2 cut(s) 637, 942
MlsI TGGCCA 1 cut(s) 952
MluCI AATT 6 cut(s) 75, 267, 314, 363, 554, 986
MluNI TGGCCA 1 cut(s) 952
MlyI GAGTC 2 cut(s) 368, 1042
MmeI TCCRAC 2 cut(s) 148, 453
MnlI CCTC 7 cut(s) 144, 187, 190, 285, 608, 796, 1036
Mox20I TGGCCA 1 cut(s) 952
Mph1103I ATGCAT 1 cut(s) 113
MroI TCCGGA 1 cut(s) 840
MscI TGGCCA 1 cut(s) 952
MseI TTAA 4 cut(s) 60, 231, 324, 674
MslI CAYNNNNRTG 1 cut(s) 601
Msp20I TGGCCA 1 cut(s) 952
MspI CCGG 5 cut(s) 53, 459, 646, 841, 1052
MspR9I CCNGG 3 cut(s) 460, 794, 1060
MunI CAATTG 1 cut(s) 363
MvaI CCWGG 2 cut(s) 794, 1060
MwoI GCNNNNNNNGC 3 cut(s) 108, 616, 659
NciI CCSGG 1 cut(s) 460
NcoI CCATGG 1 cut(s) 944
NdeII GATC 8 cut(s) 181, 475, 486, 544, 688, 695, 919, 1031
NheI GCTAGC 1 cut(s) 896
NlaIII CATG 8 cut(s) 111, 595, 600, 862, 911, 948, 997, 1002
NlaIV GGNNCC 4 cut(s) 217, 446, 477, 635
NmuCI GTSAC 2 cut(s) 724, 1073
NsiI ATGCAT 1 cut(s) 113
NspI RCATGY 2 cut(s) 595, 911
PciSI GCTCTTC 1 cut(s) 135
PfeI GAWTC 1 cut(s) 171
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 2 cut(s) 367, 1042
PpsI GAGTC 2 cut(s) 367, 1042
Psp6I CCWGG 2 cut(s) 792, 1058
PspEI GGTNACC 1 cut(s) 512
PspGI CCWGG 2 cut(s) 792, 1058
PspN4I GGNNCC 4 cut(s) 217, 446, 477, 635
PspOMI GGGCCC 1 cut(s) 633
PspPI GGNCC 5 cut(s) 395, 445, 633, 634, 790
PsrI GAACNNNNNNTAC 2 cut(s) 208, 240
PsuI RGATCY 2 cut(s) 475, 1031
RsaI GTAC 4 cut(s) 162, 226, 863, 874
RsaNI GTAC 4 cut(s) 161, 225, 862, 873
RseI CAYNNNNRTG 1 cut(s) 601
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 4 cut(s) 60, 231, 324, 674
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 8 cut(s) 181, 475, 486, 544, 688, 695, 919, 1031
Sau96I GGNCC 5 cut(s) 395, 445, 633, 634, 790
ScaI AGTACT 1 cut(s) 226
SchI GAGTC 2 cut(s) 368, 1042
ScrFI CCNGG 3 cut(s) 460, 794, 1060
SduI GDGCHC 2 cut(s) 637, 942
SfaNI GCATC 2 cut(s) 193, 559
SfcI CTRYAG 1 cut(s) 247
SinI GGWCC 2 cut(s) 395, 790
SmiMI CAYNNNNRTG 1 cut(s) 601
SmlI CTYRAG 1 cut(s) 276
SmoI CTYRAG 1 cut(s) 276
SpeI ACTAGT 1 cut(s) 163
Sse9I AATT 6 cut(s) 75, 267, 314, 363, 554, 986
SsiI CCGC 1 cut(s) 662
SspMI CTAG 5 cut(s) 44, 164, 405, 504, 897
StyD4I CCNGG 3 cut(s) 458, 792, 1058
StyI CCWWGG 1 cut(s) 944
TaaI ACNGT 4 cut(s) 229, 302, 730, 1023
TaiI ACGT 1 cut(s) 151
TaqI TCGA 4 cut(s) 145, 613, 931, 1043
TasI AATT 6 cut(s) 75, 267, 314, 363, 554, 986
TatI WGTACW 4 cut(s) 160, 224, 861, 872
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 4 cut(s) 60, 231, 324, 674
Tru9I TTAA 4 cut(s) 60, 231, 324, 674
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 2 cut(s) 724, 1073
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 2 cut(s) 724, 1073
TspDTI ATGAA 4 cut(s) 17, 163, 307, 847
TspRI CASTG 1 cut(s) 505
VpaK11BI GGWCC 2 cut(s) 395, 790
XapI RAATTY 2 cut(s) 267, 314
XceI RCATGY 2 cut(s) 595, 911
XmiI GTMKAC 1 cut(s) 967
XspI CTAG 5 cut(s) 44, 164, 405, 504, 897
ZraI GACGTC 1 cut(s) 149
ZrmI AGTACT 1 cut(s) 226
Zsp2I ATGCAT 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.