Rroxscaffold_1G00002290

Dip2/Utp12 Family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000668
Physical Location & Seq
Reverse (-)
2715536 .. 2720826
5291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00002290.1

Sequence Viewer

Length: 891 bp
ATGTTTTCTTTTTCTTTTCCTGGTCGAAAACGACTACTAGGTTGGTTTTTACATGTATTTGATGGTACTTTCATAGCTAGCACTAGCTCTGGTGCTAATCAGAAGATGAAGACTAAAAAGTCAAGTAAGAAGCGCGCAGCACTGGAGCTAGTTACTCCAGCTATTAAAGACAAGGTTGAAATTGGTCATGGAGAGACTGCAGATGGAGTCCTTGTTGATCAGGATTTGAACGAACCAACCATGGGAGAAAAACTTGCTAGTTTGAATATAGTACCTGATGATAGAGTGGAGAGCCAAAATAAAGAAGGCTCTTCTCTCCATGCAAAGCCTCCGAGTGCAGACTCTGTTCATATTTTGCTCAAGCAAGCACTACATGCTGATGACCGTGCCCTTCTATTCGAGTGCTTATACACCCAAGATGAGAAGGTCATTGCAAAGTCTGTCTCTCAATTGAATCCAGCTGGTGTTTTGAAGCTCTTACAATCTCTCATATCTCTTATTGAGTCAAGGGGTGCAATTTTGGCATGTGCACTTCCATGGCTGAGAAGTCTACTTCTTCAACATGCAAGTGGGATAGTGTCTCAAGAATCTTCTTTAAGTGCCTTGAACTCTTTATATCAGCTCATTGAGTCCAGAGTTTCCACTTTTCAGTCAGCTCTTCAACTATCAAGTGTTTTAGACTTGCTGTATACAGGGGTTGTTGATGATTTGGATGATGAGAATGGCACTACAGGTCCAGTTATTTACGAGGACAAAGATAGTGATGAAGAGGAATCTGAGGACGCCATGGAGACTGATCAAGACAATGAAGATGGTGAGGATTTGGATGCAGAACTTGGTGGTGTTAGTGACTTCGAAGGAATTGAAGGACTTGATGACTTGAGCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Utp12

Protein Analysis

296

Amino Acids

32.13

Weight (kDa)

4.4

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Utp12 PF04003 128 - 229 1.2e-16 Dip2/Utp12 Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 118
AccI GTMKAC 2 cut(s) 550, 689
AccII CGCG 1 cut(s) 135
AcyI GRCGYC 1 cut(s) 783
AfaI GTAC 2 cut(s) 67, 273
AfiI CCNNNNNNNGG 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 9 cut(s) 179, 229, 265, 454, 472, 560, 607, 662, 866
AjnI CCWGG 1 cut(s) 19
AluBI AGCT 8 cut(s) 77, 87, 148, 161, 461, 475, 622, 656
AluI AGCT 8 cut(s) 77, 87, 148, 161, 461, 475, 622, 656
Alw21I GWGCWC 1 cut(s) 532
Alw26I GTCTC 4 cut(s) 188, 448, 585, 785
Alw44I GTGCAC 1 cut(s) 528
AlwNI CAGNNNCTG 1 cut(s) 344
ApaLI GTGCAC 1 cut(s) 528
ApeKI GCWGC 1 cut(s) 137
AspLEI GCGC 2 cut(s) 135, 137
AspS9I GGNCC 1 cut(s) 734
AsuHPI GGTGA 1 cut(s) 827
AsuII TTCGAA 1 cut(s) 855
AsuNHI GCTAGC 1 cut(s) 77
AvaII GGWCC 1 cut(s) 734
BaeGI GKGCMC 2 cut(s) 391, 532
BbsI GAAGAC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 532
BbvI GCAGC 1 cut(s) 149
BccI CCATC 3 cut(s) 56, 197, 806
BciT130I CCWGG 1 cut(s) 21
BclI TGATCA 2 cut(s) 217, 796
BcoDI GTCTC 4 cut(s) 188, 448, 585, 785
BfaI CTAG 5 cut(s) 38, 78, 84, 149, 258
BfmI CTRYAG 2 cut(s) 198, 729
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 21
Bme18I GGWCC 1 cut(s) 734
BmgT120I GGNCC 1 cut(s) 734
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 1 cut(s) 817
BmtI GCTAGC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 116
BpmI CTGGAG 2 cut(s) 141, 164
Bpu14I TTCGAA 1 cut(s) 855
BpuEI CTTGAG 2 cut(s) 344, 567
BsaHI GRCGYC 1 cut(s) 783
BsaJI CCNNGG 3 cut(s) 240, 536, 786
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 147, 737
Bse3DI GCAATG 1 cut(s) 429
BseBI CCWGG 1 cut(s) 21
BseDI CCNNGG 3 cut(s) 240, 536, 786
BseGI GGATG 2 cut(s) 718, 832
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 2 cut(s) 533, 768
BseNI ACTGG 2 cut(s) 147, 737
BsePI GCGCGC 1 cut(s) 133
BseSI GKGCMC 2 cut(s) 391, 532
BseXI GCAGC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 532
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 4 cut(s) 188, 448, 585, 785
Bsp119I TTCGAA 1 cut(s) 855
Bsp1286I GDGCHC 2 cut(s) 391, 532
Bsp143I GATC 2 cut(s) 217, 796
Bsp19I CCATGG 3 cut(s) 240, 536, 786
BspCNI CTCAG 2 cut(s) 534, 769
BspFNI CGCG 1 cut(s) 135
BspMAI CTGCAG 1 cut(s) 202
BspOI GCTAGC 1 cut(s) 81
BspQI GCTCTTC 2 cut(s) 316, 663
BspT104I TTCGAA 1 cut(s) 855
BsrDI GCAATG 1 cut(s) 429
BsrI ACTGG 2 cut(s) 147, 737
BssECI CCNNGG 3 cut(s) 240, 536, 786
BssHII GCGCGC 1 cut(s) 133
BssMI GATC 2 cut(s) 217, 796
BssNAI GTATAC 1 cut(s) 690
BssNI GRCGYC 1 cut(s) 783
BssT1I CCWWGG 3 cut(s) 240, 536, 786
Bst1107I GTATAC 1 cut(s) 690
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 3 cut(s) 316, 663, 762
BstACI GRCGYC 1 cut(s) 783
BstAPI GCANNNNNTGC 1 cut(s) 374
BstBI TTCGAA 1 cut(s) 855
BstC8I GCNNGC 3 cut(s) 79, 135, 366
BstDEI CTNAG 2 cut(s) 542, 777
BstDSI CCRYGG 3 cut(s) 240, 536, 786
BstF5I GGATG 2 cut(s) 718, 832
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 2 cut(s) 135, 137
BstKTI GATC 2 cut(s) 220, 799
BstMAI GTCTC 4 cut(s) 188, 448, 585, 785
BstMBI GATC 2 cut(s) 217, 796
BstMWI GCNNNNNNNGC 2 cut(s) 374, 521
BstNI CCWGG 1 cut(s) 21
BstNSI RCATGY 4 cut(s) 56, 377, 528, 566
BstSCI CCNGG 1 cut(s) 19
BstSFI CTRYAG 2 cut(s) 198, 729
BstSLI GKGCMC 2 cut(s) 391, 532
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 116
BstZ17I GTATAC 1 cut(s) 690
BtgI CCRYGG 3 cut(s) 240, 536, 786
BtsCI GGATG 2 cut(s) 718, 832
BtsIMutI CAGTG 1 cut(s) 140
Cac8I GCNNGC 3 cut(s) 79, 135, 366
CaiI CAGNNNCTG 1 cut(s) 344
CfoI GCGC 2 cut(s) 135, 137
Cfr13I GGNCC 1 cut(s) 734
CseI GACGC 1 cut(s) 791
Csp6I GTAC 2 cut(s) 66, 272
CviAII CATG 9 cut(s) 53, 188, 241, 320, 374, 525, 537, 563, 787
CviQI GTAC 2 cut(s) 66, 272
DdeI CTNAG 2 cut(s) 542, 777
DpnI GATC 2 cut(s) 219, 798
DpnII GATC 2 cut(s) 217, 796
DrdI GACNNNNNNGTC 1 cut(s) 118
DseDI GACNNNNNNGTC 1 cut(s) 118
Eam1104I CTCTTC 3 cut(s) 316, 663, 762
EarI CTCTTC 3 cut(s) 316, 663, 762
Eco130I CCWWGG 3 cut(s) 240, 536, 786
Eco47I GGWCC 1 cut(s) 734
EcoRII CCWGG 1 cut(s) 19
EcoT14I CCWWGG 3 cut(s) 240, 536, 786
ErhI CCWWGG 3 cut(s) 240, 536, 786
FaeI CATG 9 cut(s) 56, 191, 244, 323, 377, 528, 540, 566, 790
FatI CATG 9 cut(s) 52, 187, 240, 319, 373, 524, 536, 562, 786
FbaI TGATCA 2 cut(s) 217, 796
FblI GTMKAC 2 cut(s) 550, 689
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 2 cut(s) 725, 839
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 5 cut(s) 38, 78, 84, 149, 258
GlaI GCGC 2 cut(s) 134, 136
GluI GCNGC 1 cut(s) 138
GsuI CTGGAG 2 cut(s) 141, 164
HgaI GACGC 1 cut(s) 791
HhaI GCGC 2 cut(s) 135, 137
Hin1I GRCGYC 1 cut(s) 783
Hin1II CATG 9 cut(s) 56, 191, 244, 323, 377, 528, 540, 566, 790
Hin6I GCGC 2 cut(s) 133, 135
HinP1I GCGC 2 cut(s) 133, 135
HinfI GANTC 7 cut(s) 207, 341, 454, 503, 587, 629, 773
HphI GGTGA 1 cut(s) 827
Hpy166II GTNNAC 3 cut(s) 530, 551, 690
Hpy188I TCNGA 3 cut(s) 102, 333, 778
Hpy188III TCNNGA 4 cut(s) 221, 584, 633, 800
Hpy8I GTNNAC 3 cut(s) 530, 551, 690
HpyAV CCTTC 5 cut(s) 299, 401, 418, 851, 860
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4V TGCA 8 cut(s) 200, 323, 338, 434, 515, 530, 566, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 521
HpyF3I CTNAG 2 cut(s) 542, 777
Hsp92I GRCGYC 1 cut(s) 783
Hsp92II CATG 9 cut(s) 56, 191, 244, 323, 377, 528, 540, 566, 790
HspAI GCGC 2 cut(s) 133, 135
Ksp22I TGATCA 2 cut(s) 217, 796
Kzo9I GATC 2 cut(s) 217, 796
LguI GCTCTTC 2 cut(s) 316, 663
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 1 cut(s) 817
MaeI CTAG 5 cut(s) 38, 78, 84, 149, 258
MaeIII GTNAC 2 cut(s) 151, 848
MalI GATC 2 cut(s) 219, 798
MboI GATC 2 cut(s) 217, 796
MboII GAAGA 8 cut(s) 115, 121, 303, 548, 582, 650, 779, 821
MfeI CAATTG 1 cut(s) 449
MhlI GDGCHC 2 cut(s) 391, 532
MluCI AATT 4 cut(s) 180, 449, 516, 861
MlyI GAGTC 4 cut(s) 216, 335, 512, 638
MnlI CCTC 5 cut(s) 339, 742, 763, 772, 811
MseI TTAA 2 cut(s) 165, 596
MslI CAYNNNNRTG 3 cut(s) 378, 535, 567
MspA1I CMGCKG 1 cut(s) 461
MspR9I CCNGG 1 cut(s) 21
MunI CAATTG 1 cut(s) 449
MvaI CCWGG 1 cut(s) 21
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 374, 521
NcoI CCATGG 3 cut(s) 240, 536, 786
NdeII GATC 2 cut(s) 217, 796
NheI GCTAGC 1 cut(s) 77
NlaIII CATG 9 cut(s) 56, 191, 244, 323, 377, 528, 540, 566, 790
NmuCI GTSAC 1 cut(s) 848
NspI RCATGY 4 cut(s) 56, 377, 528, 566
NspV TTCGAA 1 cut(s) 855
PauI GCGCGC 1 cut(s) 133
PciI ACATGT 1 cut(s) 52
PciSI GCTCTTC 2 cut(s) 316, 663
PfeI GAWTC 3 cut(s) 454, 587, 773
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 4 cut(s) 215, 335, 511, 637
PpsI GAGTC 4 cut(s) 215, 335, 511, 637
PscI ACATGT 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 19
PspGI CCWGG 1 cut(s) 19
PspPI GGNCC 1 cut(s) 734
PstI CTGCAG 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 344
PteI GCGCGC 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 2 cut(s) 67, 273
RsaNI GTAC 2 cut(s) 66, 272
RseI CAYNNNNRTG 3 cut(s) 378, 535, 567
SapI GCTCTTC 2 cut(s) 316, 663
SaqAI TTAA 2 cut(s) 165, 596
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 2 cut(s) 217, 796
Sau96I GGNCC 1 cut(s) 734
SchI GAGTC 4 cut(s) 216, 335, 512, 638
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 2 cut(s) 391, 532
SfaNI GCATC 1 cut(s) 817
SfcI CTRYAG 2 cut(s) 198, 729
SfuI TTCGAA 1 cut(s) 855
SinI GGWCC 1 cut(s) 734
SmiMI CAYNNNNRTG 3 cut(s) 378, 535, 567
SmlI CTYRAG 3 cut(s) 359, 582, 880
SmoI CTYRAG 3 cut(s) 359, 582, 880
Sse9I AATT 4 cut(s) 180, 449, 516, 861
SspMI CTAG 5 cut(s) 38, 78, 84, 149, 258
StyD4I CCNGG 1 cut(s) 19
StyI CCWWGG 3 cut(s) 240, 536, 786
TaaI ACNGT 1 cut(s) 386
TaqI TCGA 3 cut(s) 25, 399, 855
TasI AATT 4 cut(s) 180, 449, 516, 861
TfiI GAWTC 3 cut(s) 454, 587, 773
Tru1I TTAA 2 cut(s) 165, 596
Tru9I TTAA 2 cut(s) 165, 596
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 848
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 848
TspDTI ATGAA 5 cut(s) 61, 122, 338, 780, 822
TspRI CASTG 1 cut(s) 147
VneI GTGCAC 1 cut(s) 528
VpaK11BI GGWCC 1 cut(s) 734
XceI RCATGY 4 cut(s) 56, 377, 528, 566
XmiI GTMKAC 2 cut(s) 550, 689
XspI CTAG 5 cut(s) 38, 78, 84, 149, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.