Rorug05G0473800

Dip2/Utp12 Family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000668
Physical Location & Seq
Reverse (-)
65101271 .. 65101762
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0473800.1

Sequence Viewer

Length: 492 bp
ATGCCAACATCTCCAGATCAGAATATCATTTTTACTGAGTTTGATCAACACAATCTTGAAATTATTGATCCCAGTTCGTTTCTATCCAATCCATACCCTCCTCCTCGTGATGATTCATCCCGGTCTTTGGGTGTGACCTCAGAGGCCTCCAGAGCTACTCTCCAGTATATAAGTGAGATGCTTATGGAGGAAGAGCTGGAGAACAGACCCTGCATGCTTCAGGACTGTTTGGCCCTCCAAGCTGCAGAGAAATCCTTGGAAGATGTCCTGGTTCAGCAATATCCTCCTTTGACTAATCCCGTTCTTGCTTCTTCCATTCAGCAAAATGTTGAGAACTCTGATGATTTCATTAACCACAGCAGTAATAGCTCCACTGCTGCTAGAAACTGGGATGATGGTTCAGGTTGGATTTCCTTTCAAAATGATCACAATGACTCAACAAAAGGATCAAGGAGCAAAAAAGATCGCATTGGGAGGATGGCGATTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Utp12

Protein Analysis

163

Amino Acids

18.23

Weight (kDa)

4.41

Isoelectric Point (pI)

65.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 62, 454
AcuI CTGAAG 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 2 cut(s) 59, 419
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 4 cut(s) 155, 196, 242, 369
AluI AGCT 4 cut(s) 155, 196, 242, 369
AlwI GGATC 2 cut(s) 62, 454
AlwNI CAGNNNCTG 1 cut(s) 210
AoxI GGCC 2 cut(s) 144, 231
ApeKI GCWGC 2 cut(s) 242, 377
AspS9I GGNCC 1 cut(s) 232
AsuC2I CCSGG 1 cut(s) 121
BauI CACGAG 1 cut(s) 105
BbvI GCAGC 2 cut(s) 229, 364
BccI CCATC 2 cut(s) 389, 472
BciT130I CCWGG 1 cut(s) 269
BclI TGATCA 2 cut(s) 43, 424
BcnI CCSGG 1 cut(s) 121
BfaI CTAG 2 cut(s) 381, 490
BfmI CTRYAG 1 cut(s) 243
BisI GCNGC 2 cut(s) 243, 378
BlsI GCNGC 2 cut(s) 244, 379
Bme1390I CCNGG 2 cut(s) 121, 269
BmgT120I GGNCC 1 cut(s) 232
BmrFI CCNGG 2 cut(s) 121, 269
BmrI ACTGGG 2 cut(s) 66, 397
BmsI GCATC 1 cut(s) 168
BmuI ACTGGG 2 cut(s) 66, 397
BplI GAGNNNNNCTC 2 cut(s) 144, 176
BpmI CTGGAG 3 cut(s) 133, 146, 218
BpuMI CCSGG 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 255
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 3 cut(s) 72, 163, 392
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 3 cut(s) 116, 397, 483
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 27, 153
BseNI ACTGG 3 cut(s) 72, 163, 392
BseRI GAGGAG 2 cut(s) 90, 93
BseXI GCAGC 2 cut(s) 229, 364
BshFI GGCC 2 cut(s) 146, 233
BsiSI CCGG 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 127
BsnI GGCC 2 cut(s) 146, 233
Bsp143I GATC 6 cut(s) 16, 43, 67, 424, 446, 463
BspANI GGCC 2 cut(s) 146, 233
BspCNI CTCAG 2 cut(s) 28, 152
BspMAI CTGCAG 1 cut(s) 247
BspPI GGATC 2 cut(s) 62, 454
BspQI GCTCTTC 1 cut(s) 186
BsrI ACTGG 3 cut(s) 72, 163, 392
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 6 cut(s) 16, 43, 67, 424, 446, 463
BssSI CACGAG 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 255
Bst2BI CACGAG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 215
BstDEI CTNAG 2 cut(s) 36, 139
BstF5I GGATG 3 cut(s) 116, 397, 483
BstKTI GATC 6 cut(s) 19, 46, 70, 427, 449, 466
BstMBI GATC 6 cut(s) 16, 43, 67, 424, 446, 463
BstMWI GCNNNNNNNGC 3 cut(s) 152, 239, 366
BstNI CCWGG 1 cut(s) 269
BstNSI RCATGY 1 cut(s) 217
BstSCI CCNGG 2 cut(s) 119, 267
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 2 cut(s) 229, 364
BsuRI GGCC 2 cut(s) 146, 233
BtsCI GGATG 3 cut(s) 116, 397, 483
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 1 cut(s) 215
CaiI CAGNNNCTG 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 232
CviAII CATG 1 cut(s) 214
CviJI RGCY 6 cut(s) 146, 155, 196, 233, 242, 369
CviKI_1 RGCY 6 cut(s) 146, 155, 196, 233, 242, 369
DdeI CTNAG 2 cut(s) 36, 139
DpnI GATC 6 cut(s) 18, 45, 69, 426, 448, 465
DpnII GATC 6 cut(s) 16, 43, 67, 424, 446, 463
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 255
Eco147I AGGCCT 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 1 cut(s) 217
FaiI YATR 5 cut(s) 94, 168, 170, 185, 215
FatI CATG 1 cut(s) 213
FbaI TGATCA 2 cut(s) 43, 424
Fnu4HI GCNGC 2 cut(s) 243, 378
FokI GGATG 2 cut(s) 103, 404
Fsp4HI GCNGC 2 cut(s) 243, 378
FspBI CTAG 2 cut(s) 381, 490
GluI GCNGC 2 cut(s) 243, 378
GsuI CTGGAG 3 cut(s) 133, 146, 218
HaeIII GGCC 2 cut(s) 146, 233
HapII CCGG 1 cut(s) 121
Hin1II CATG 1 cut(s) 217
HinfI GANTC 2 cut(s) 113, 434
HpaII CCGG 1 cut(s) 121
Hpy188I TCNGA 3 cut(s) 21, 142, 340
Hpy188III TCNNGA 5 cut(s) 14, 56, 107, 150, 221
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 2 cut(s) 213, 245
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 239, 366
HpyF3I CTNAG 2 cut(s) 36, 139
Hsp92II CATG 1 cut(s) 217
Ksp22I TGATCA 2 cut(s) 43, 424
Kzo9I GATC 6 cut(s) 16, 43, 67, 424, 446, 463
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 2 cut(s) 374, 453
Lsp1109I GCAGC 2 cut(s) 229, 364
LweI GCATC 1 cut(s) 168
MaeI CTAG 2 cut(s) 381, 490
MaeIII GTNAC 1 cut(s) 133
MalI GATC 6 cut(s) 18, 45, 69, 426, 448, 465
MboI GATC 6 cut(s) 16, 43, 67, 424, 446, 463
MboII GAAGA 3 cut(s) 203, 272, 303
MluCI AATT 1 cut(s) 60
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 386
MseI TTAA 1 cut(s) 351
MspI CCGG 1 cut(s) 121
MspR9I CCNGG 2 cut(s) 121, 269
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 3 cut(s) 152, 239, 366
NciI CCSGG 1 cut(s) 121
NdeII GATC 6 cut(s) 16, 43, 67, 424, 446, 463
NlaIII CATG 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 217
PaeI GCATGC 1 cut(s) 217
PceI AGGCCT 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 2 cut(s) 244, 379
PleI GAGTC 1 cut(s) 428
PpsI GAGTC 1 cut(s) 428
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspPI GGNCC 1 cut(s) 232
PstI CTGCAG 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 2 cut(s) 243, 378
Sau3AI GATC 6 cut(s) 16, 43, 67, 424, 446, 463
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 2 cut(s) 121, 269
SetI ASST 6 cut(s) 140, 157, 198, 244, 371, 406
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 1 cut(s) 243
SphI GCATGC 1 cut(s) 217
Sse9I AATT 1 cut(s) 60
SseBI AGGCCT 1 cut(s) 146
SspMI CTAG 2 cut(s) 381, 490
StuI AGGCCT 1 cut(s) 146
StyD4I CCNGG 2 cut(s) 119, 267
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 227
TasI AATT 1 cut(s) 60
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 2 cut(s) 242, 377
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 2 cut(s) 105, 337
TspRI CASTG 1 cut(s) 379
XceI RCATGY 1 cut(s) 217
XspI CTAG 2 cut(s) 381, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.