Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000432.1

Orthogroup ID

OG0000668

Physical Location & Seq

Genomic Coordinates Reverse (-)

263326 .. 265119

Gene Structure 1794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000432.1_g000076.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgaagactaaaaagtcaagtaagaagcgtgcagcactggagctggatactccggctattaaagacaaggttgaaattggtcatggagagactgcagatggagtccttgttgatcaggatttgaacgaaccaaccatgggagaaaaacttgctagtttgaatatagtacctgatgatagagtggagagccaaaataaagaaggctcttctctccatgcaaagcctccgagtgcagactctgttcatattttgctcaagcaagcactacatgctgatgaccgtgcccttctattcgagtgcttatacacccaagatgagaaggtggtcattgcaaagtctgtctctcaattgaatccagctggtgttttgaagctcttacaatctctcatatcttttattgagtcaaggggtgcaattttggcgtgtgcacttccatggctgagaagtctacttcttcaacacgcaagtgggatagtgtctcaagaatcttctttaagtgccttgaactctttatatcagctcattgagtccagagtttctacttttcagtcagctcttcaactatcaagtgttttagacttgctgtatacaggggtaagattgctcatggtggtgaacattgtggcaagtgaaattatcagagatatacagttcatgcaactcaactcttttctgcaggttgttgatgatttggatgatgagaatggcactacaggtccagttatttacgaggacaaagatagtgatgaagaggaatctgaggacgccatggagactgatcaagacagtgaagatggtgaggatttggatgcagaacttggtggtgttagcgactttgaaggaattgaaggacttgatgacttgagcgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12

Protein Analysis

290

Amino Acids

31.6

Weight (kDa)

4.27

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15420 AT1G15420
fragaria_vesca	FvH4_3g30171 FvH4_3g44471 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44510 FvH4_7g12841
malus_domestica	MD12G1094900.v1.1 MD14G1090800.v1.1 MD15G1387900.v1.1 MD15G1388000.v1.1
prunus_persica	Prupe.6G012700_v2.0.a1
pyrus_communis	pycom15g34820
rosa_chinensis	RchiOBHm_Chr1g0331681 RchiOBHm_Chr5g0081171 RchiOBHm_Chr5g0081181 RchiOBHm_Chr5g0081211
rosa_laevigata	RLG00000030438 RLG00000030441 RLG00000030443 RLG00000030447 RLG00000036915 RLG00000036917 RLG00000036919
rosa_multiflora	Rmu_sc0005044.1_g000010 Rmu_sc0005044.1_g000012 Rmu_sc0007768.1_g000001 Rmu_sc0020106.1_g000001 Rmu_ssc0000432.1_g000071 Rmu_ssc0000432.1_g000072 Rmu_ssc0000432.1_g000074 Rmu_ssc0000432.1_g000076 Rmu_ssc0000432.1_g000077
rosa_roxburghii	Rroxscaffold_1G00002290 Rroxscaffold_4G00323980
rosa_rugosa	Rorug01G0031400 Rorug01G0031500 Rorug05G0473700 Rorug05G0473800 Rorug05G0473900 Rorug05G0474000 Rorug05G0474100 Rorug05G0474200 Rorug05G0474400 Rorug05G0474700
rosa_samantha	Rh1AG119200 Rh1BG040400 Rh1CG045400 Rh1CG114200 Rh1CG114300 Rh1CG221300 Rh1DG050000 Rh1DG124400 Rh1DG124600 Rh5AG526300 Rh5AG526500 Rh5BG550600 Rh5CG573500 Rh5DG560300 Rh5DG560700
rosa_wichuraiana	Rw1G009620 Rw1G009630 Rw5G048900 Rw5G048910 Rw5G048940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
Acc36I	ACCTGC	1 cut(s)	667
AccI	GTMKAC	2 cut(s)	448, 587
AcyI	GRCGYC	1 cut(s)	765
AfaI	GTAC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	137
AleI	CACNNNNGTG	1 cut(s)	465
AluBI	AGCT	5 cut(s)	43, 359, 373, 520, 554
AluI	AGCT	5 cut(s)	43, 359, 373, 520, 554
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	4 cut(s)	83, 346, 483, 767
Alw44I	GTGCAC	1 cut(s)	426
AlwNI	CAGNNNCTG	1 cut(s)	239
ApaLI	GTGCAC	1 cut(s)	426
ApeKI	GCWGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	716
AsuHPI	GGTGA	2 cut(s)	625, 809
AvaII	GGWCC	1 cut(s)	716
BaeGI	GKGCMC	2 cut(s)	286, 430
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	2 cut(s)	92, 788
BciVI	GTATCC	1 cut(s)	40
BclI	TGATCA	2 cut(s)	112, 778
BcoDI	GTCTC	4 cut(s)	83, 346, 483, 767
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	3 cut(s)	93, 674, 711
BfuAI	ACCTGC	1 cut(s)	667
BfuI	GTATCC	1 cut(s)	40
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	716
BmgT120I	GGNCC	1 cut(s)	716
BmsI	GCATC	1 cut(s)	799
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	59
BpuEI	CTTGAG	2 cut(s)	239, 465
BsaHI	GRCGYC	1 cut(s)	765
BsaJI	CCNNGG	3 cut(s)	135, 434, 768
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	42, 719
Bse3DI	GCAATG	1 cut(s)	327
BseDI	CCNNGG	3 cut(s)	135, 434, 768
BseGI	GGATG	2 cut(s)	700, 814
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	431, 750
BseNI	ACTGG	2 cut(s)	42, 719
BseSI	GKGCMC	2 cut(s)	286, 430
BseXI	GCAGC	1 cut(s)	44
BsgI	GTGCAG	2 cut(s)	51, 252
BsiHKAI	GWGCWC	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	4 cut(s)	83, 346, 483, 767
Bsp1286I	GDGCHC	2 cut(s)	286, 430
Bsp143I	GATC	2 cut(s)	112, 778
Bsp19I	CCATGG	3 cut(s)	135, 434, 768
BspCNI	CTCAG	2 cut(s)	432, 751
BspMAI	CTGCAG	2 cut(s)	97, 678
BspMI	ACCTGC	1 cut(s)	667
BspQI	GCTCTTC	2 cut(s)	211, 561
BsrDI	GCAATG	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	42, 719
BssECI	CCNNGG	3 cut(s)	135, 434, 768
BssMI	GATC	2 cut(s)	112, 778
BssNAI	GTATAC	1 cut(s)	588
BssNI	GRCGYC	1 cut(s)	765
BssT1I	CCWWGG	3 cut(s)	135, 434, 768
Bst1107I	GTATAC	1 cut(s)	588
Bst4CI	ACNGT	3 cut(s)	281, 651, 788
Bst6I	CTCTTC	3 cut(s)	211, 561, 744
BstACI	GRCGYC	1 cut(s)	765
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	30, 261
BstDEI	CTNAG	2 cut(s)	440, 759
BstDSI	CCRYGG	3 cut(s)	135, 434, 768
BstF5I	GGATG	2 cut(s)	700, 814
BstKTI	GATC	2 cut(s)	115, 781
BstMAI	GTCTC	4 cut(s)	83, 346, 483, 767
BstMBI	GATC	2 cut(s)	112, 778
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 419
BstNSI	RCATGY	1 cut(s)	272
BstSFI	CTRYAG	3 cut(s)	93, 674, 711
BstSLI	GKGCMC	2 cut(s)	286, 430
BstV1I	GCAGC	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	11
BstZ17I	GTATAC	1 cut(s)	588
BsuI	GTATCC	1 cut(s)	40
BtgI	CCRYGG	3 cut(s)	135, 434, 768
BtsCI	GGATG	2 cut(s)	700, 814
BtsIMutI	CAGTG	2 cut(s)	35, 793
BveI	ACCTGC	1 cut(s)	667
Cac8I	GCNNGC	2 cut(s)	30, 261
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	716
CseI	GACGC	1 cut(s)	773
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	8 cut(s)	83, 136, 215, 269, 435, 607, 655, 769
CviQI	GTAC	1 cut(s)	167
DdeI	CTNAG	2 cut(s)	440, 759
DpnI	GATC	2 cut(s)	114, 780
DpnII	GATC	2 cut(s)	112, 778
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
Eam1104I	CTCTTC	3 cut(s)	211, 561, 744
EarI	CTCTTC	3 cut(s)	211, 561, 744
Eco130I	CCWWGG	3 cut(s)	135, 434, 768
Eco47I	GGWCC	1 cut(s)	716
EcoT14I	CCWWGG	3 cut(s)	135, 434, 768
ErhI	CCWWGG	3 cut(s)	135, 434, 768
FaeI	CATG	8 cut(s)	86, 139, 218, 272, 438, 610, 658, 772
FatI	CATG	8 cut(s)	82, 135, 214, 268, 434, 606, 654, 768
FbaI	TGATCA	2 cut(s)	112, 778
FblI	GTMKAC	2 cut(s)	448, 587
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	2 cut(s)	707, 821
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	1 cut(s)	153
GluI	GCNGC	1 cut(s)	33
GsuI	CTGGAG	1 cut(s)	59
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	773
Hin1I	GRCGYC	1 cut(s)	765
Hin1II	CATG	8 cut(s)	86, 139, 218, 272, 438, 610, 658, 772
HinfI	GANTC	7 cut(s)	102, 236, 352, 401, 485, 527, 755
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	2 cut(s)	625, 809
Hpy166II	GTNNAC	4 cut(s)	428, 449, 588, 616
Hpy188I	TCNGA	3 cut(s)	228, 641, 760
Hpy188III	TCNNGA	4 cut(s)	116, 482, 531, 782
Hpy8I	GTNNAC	4 cut(s)	428, 449, 588, 616
HpyAV	CCTTC	5 cut(s)	194, 296, 313, 833, 842
HpyCH4III	ACNGT	3 cut(s)	281, 651, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 419
HpyF3I	CTNAG	2 cut(s)	440, 759
Hsp92I	GRCGYC	1 cut(s)	765
Hsp92II	CATG	8 cut(s)	86, 139, 218, 272, 438, 610, 658, 772
Ksp22I	TGATCA	2 cut(s)	112, 778
Kzo9I	GATC	2 cut(s)	112, 778
LguI	GCTCTTC	2 cut(s)	211, 561
LmnI	GCTCC	1 cut(s)	40
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	1 cut(s)	799
MaeI	CTAG	1 cut(s)	153
MalI	GATC	2 cut(s)	114, 780
MboI	GATC	2 cut(s)	112, 778
MboII	GAAGA	7 cut(s)	16, 198, 446, 480, 548, 761, 803
MfeI	CAATTG	1 cut(s)	347
MhlI	GDGCHC	2 cut(s)	286, 430
MluCI	AATT	5 cut(s)	75, 347, 414, 633, 843
MlyI	GAGTC	4 cut(s)	111, 230, 410, 536
MnlI	CCTC	5 cut(s)	234, 724, 745, 754, 793
MseI	TTAA	2 cut(s)	60, 494
MslI	CAYNNNNRTG	4 cut(s)	273, 433, 465, 611
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	269, 419
NcoI	CCATGG	3 cut(s)	135, 434, 768
NdeII	GATC	2 cut(s)	112, 778
NlaIII	CATG	8 cut(s)	86, 139, 218, 272, 438, 610, 658, 772
NspI	RCATGY	1 cut(s)	272
OliI	CACNNNNGTG	1 cut(s)	465
PciSI	GCTCTTC	2 cut(s)	211, 561
PfeI	GAWTC	3 cut(s)	352, 485, 755
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	4 cut(s)	110, 230, 409, 535
PpsI	GAGTC	4 cut(s)	110, 230, 409, 535
PspPI	GGNCC	1 cut(s)	716
PstI	CTGCAG	2 cut(s)	97, 678
PstNI	CAGNNNCTG	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
RseI	CAYNNNNRTG	4 cut(s)	273, 433, 465, 611
SapI	GCTCTTC	2 cut(s)	211, 561
SaqAI	TTAA	2 cut(s)	60, 494
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	2 cut(s)	112, 778
Sau96I	GGNCC	1 cut(s)	716
SchI	GAGTC	4 cut(s)	111, 230, 410, 536
SduI	GDGCHC	2 cut(s)	286, 430
SfaNI	GCATC	1 cut(s)	799
SfcI	CTRYAG	3 cut(s)	93, 674, 711
SinI	GGWCC	1 cut(s)	716
SmiMI	CAYNNNNRTG	4 cut(s)	273, 433, 465, 611
SmlI	CTYRAG	3 cut(s)	254, 480, 862
SmoI	CTYRAG	3 cut(s)	254, 480, 862
Sse9I	AATT	5 cut(s)	75, 347, 414, 633, 843
SspMI	CTAG	1 cut(s)	153
StyI	CCWWGG	3 cut(s)	135, 434, 768
TaaI	ACNGT	3 cut(s)	281, 651, 788
TaqI	TCGA	1 cut(s)	294
TasI	AATT	5 cut(s)	75, 347, 414, 633, 843
TfiI	GAWTC	3 cut(s)	352, 485, 755
Tru1I	TTAA	2 cut(s)	60, 494
Tru9I	TTAA	2 cut(s)	60, 494
TscAI	CASTG	2 cut(s)	42, 793
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	4 cut(s)	17, 233, 643, 762
TspRI	CASTG	2 cut(s)	42, 793
VneI	GTGCAC	1 cut(s)	426
VpaK11BI	GGWCC	1 cut(s)	716
XceI	RCATGY	1 cut(s)	272
XmiI	GTMKAC	2 cut(s)	448, 587
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.