FvH4_7g12841

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000668
Physical Location & Seq
Forward (+)
11617972 .. 11619399
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12841.t1

Sequence Viewer

Length: 1041 bp
ATGCCGCCATCGTCGTCGACCAAGTTCTCAGCACCCTCCAAATCCAATAATCCTCTTCTATCTCCAGTCTTTGAAGAAGACCCTATAGTGGTAGGAACGTGTAATGATTTAGTTTTGTGCTGCCGAACTGAGTTGGACCAACGAGAATACTACATATGCAACGCATACACCACGCAATGGGTTGCTCTTCCTCCCACACCTCGATGCGAACCTCGTCTAGTACCAGTTGGTTTCATCTGCAATCCCTACTATTATGAGGAGAACGGTAATGGGACAAGTAATAGTACTCTTAAATTAAACAAGGACTATAGGTGTACTGTTGTGAGAGTTCTTCCTCATACATCTTCCTCAGATTCTGCGGCATTCAAATTCAATCTCGAGATATTCTCTTCTAAGACATGTGAATGGAGAGAAACAGTTGTGTCATCCTCGCGAGACGTTGCGCTTGATATGTGCACAGGTCCTGGCGTAGCTTACAATGGCATGCTATATTGGCACAATGGTGCTGGTCTGATCGGGTTGAATATTGAAGGTGATGATGATCATGTTCCTGATGAGTTTTGTTTCTTTGACCTAGTTGACGAGCGTGTGTCTGATGAGCGTGTGAAGTCTATAGAATGCACAGGTGTGCACCGAGGGTGTCTGCTATTCTGGGGCTGGGACGAGTTGGGTGAACGTATAATATGTTGGGAGTTGGAAGGCTCAGCCGGCAAATTATGTGTGAAACACTCGGAGGAATATTCAGTGGATACATATATTGCTCCTGATAAGCTTGCTATCTCAGCTTTTGTCCCTAACACTACTGATGGGGATATCGTTTATGTATGTGATATAGATACGGATGAGGAAGTGATGCGGGAACTCCCTGCCATGTACAACACTCGTACCAGACAGTGGTCAATTATTCAGAGCGACCCAAATGATGAGGACAGCTATATTGGTCGTCATCCTCGCCTCTTCCAGTTGGTGTTCTCCCCATGGTGGCCAACACCAGTTCCTAGACTACCACTGCATACACACAAAGGAACTATCTGTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

347

Amino Acids

39.1

Weight (kDa)

4.71

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 28 - 167 2e-06 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 29 - 167 2.1e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 177, 894
AccI GTMKAC 1 cut(s) 17
AccII CGCG 1 cut(s) 433
AciI CCGC 3 cut(s) 5, 359, 856
AcoI YGGCCR 1 cut(s) 983
AcsI RAATTY 1 cut(s) 368
AfaI GTAC 6 cut(s) 222, 286, 316, 875, 886, 1036
AfiI CCNNNNNNNGG 4 cut(s) 88, 177, 894, 981
AflIII ACRYGT 2 cut(s) 98, 398
AgsI TTSAA 5 cut(s) 74, 367, 373, 523, 530
AjnI CCWGG 1 cut(s) 463
AleI CACNNNNGTG 2 cut(s) 501, 626
AluBI AGCT 4 cut(s) 473, 772, 785, 933
AluI AGCT 4 cut(s) 473, 772, 785, 933
Alw21I GWGCWC 2 cut(s) 458, 633
Alw26I GTCTC 1 cut(s) 429
Alw44I GTGCAC 2 cut(s) 454, 629
AlwNI CAGNNNCTG 2 cut(s) 356, 464
Ama87I CYCGRG 1 cut(s) 377
AoxI GGCC 1 cut(s) 983
ApaLI GTGCAC 2 cut(s) 454, 629
ApeKI GCWGC 1 cut(s) 120
ApoI RAATTY 1 cut(s) 368
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 2 cut(s) 136, 461
AsuHPI GGTGA 2 cut(s) 545, 683
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 2 cut(s) 136, 461
BaeGI GKGCMC 2 cut(s) 458, 633
BaeI ACNNNNGTAYC 2 cut(s) 868, 901
BalI TGGCCA 1 cut(s) 985
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 2 cut(s) 458, 633
BbvI GCAGC 1 cut(s) 107
BccI CCATC 2 cut(s) 16, 800
BciT130I CCWGG 1 cut(s) 465
BciVI GTATCC 1 cut(s) 742
BclI TGATCA 1 cut(s) 541
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 4 cut(s) 218, 575, 999, 1039
BfmI CTRYAG 3 cut(s) 84, 307, 612
BfuI GTATCC 1 cut(s) 742
BisI GCNGC 3 cut(s) 5, 121, 360
BlpI GCTNAGC 1 cut(s) 703
BlsI GCNGC 3 cut(s) 6, 122, 361
BmcAI AGTACT 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 465
Bme18I GGWCC 2 cut(s) 136, 461
BmeT110I CYCGRG 1 cut(s) 377
BmgT120I GGNCC 2 cut(s) 136, 461
BmrFI CCNGG 1 cut(s) 465
BmsI GCATC 2 cut(s) 194, 843
BoxI GACNNNNGTC 1 cut(s) 895
BpiI GAAGAC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 371, 403
BpmI CTGGAG 1 cut(s) 48
Bpu1102I GCTNAGC 1 cut(s) 703
BsaBI GATNNNNATC 1 cut(s) 540
BsaJI CCNNGG 2 cut(s) 634, 977
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 177, 894, 981
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 4 cut(s) 65, 224, 961, 992
Bse3DI GCAATG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 2 cut(s) 634, 977
BseGI GGATG 3 cut(s) 425, 847, 946
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 4 cut(s) 88, 177, 894, 981
BseMI GCAATG 1 cut(s) 182
BseMII CTCAG 5 cut(s) 42, 120, 363, 717, 795
BseNI ACTGG 4 cut(s) 65, 224, 961, 992
BseRI GAGGAG 1 cut(s) 272
BseSI GKGCMC 2 cut(s) 458, 633
BseXI GCAGC 1 cut(s) 107
BseYI CCCAGC 1 cut(s) 657
Bsh1236I CGCG 1 cut(s) 433
BshFI GGCC 1 cut(s) 985
BsiHKAI GWGCWC 2 cut(s) 458, 633
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 1 cut(s) 708
BslFI GGGAC 3 cut(s) 286, 674, 776
BslI CCNNNNNNNGG 4 cut(s) 88, 177, 894, 981
BsmAI GTCTC 1 cut(s) 429
BsmBI CGTCTC 1 cut(s) 429
BsmFI GGGAC 3 cut(s) 286, 674, 776
BsmI GAATGC 2 cut(s) 362, 623
BsnI GGCC 1 cut(s) 985
BsoBI CYCGRG 1 cut(s) 377
Bsp1286I GDGCHC 2 cut(s) 458, 633
Bsp1407I TGTACA 1 cut(s) 873
Bsp143I GATC 2 cut(s) 513, 541
Bsp1720I GCTNAGC 1 cut(s) 703
Bsp19I CCATGG 1 cut(s) 977
Bsp68I TCGCGA 1 cut(s) 433
BspACI CCGC 3 cut(s) 5, 359, 856
BspANI GGCC 1 cut(s) 985
BspCNI CTCAG 5 cut(s) 41, 121, 362, 716, 794
BspFNI CGCG 1 cut(s) 433
BspQI GCTCTTC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 707
BsrGI TGTACA 1 cut(s) 873
BsrI ACTGG 4 cut(s) 65, 224, 961, 992
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 2 cut(s) 634, 977
BssMI GATC 2 cut(s) 513, 541
BssT1I CCWWGG 1 cut(s) 977
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 4 cut(s) 266, 319, 418, 894
Bst6I CTCTTC 4 cut(s) 60, 192, 394, 962
BstAUI TGTACA 1 cut(s) 873
BstC8I GCNNGC 3 cut(s) 485, 709, 774
BstDEI CTNAG 6 cut(s) 28, 129, 349, 393, 703, 781
BstDSI CCRYGG 1 cut(s) 977
BstF5I GGATG 3 cut(s) 425, 847, 946
BstFNI CGCG 1 cut(s) 433
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 2 cut(s) 516, 544
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 2 cut(s) 513, 541
BstMWI GCNNNNNNNGC 3 cut(s) 493, 708, 782
BstNI CCWGG 1 cut(s) 465
BstNSI RCATGY 2 cut(s) 402, 487
BstPAI GACNNNNGTC 1 cut(s) 895
BstSCI CCNGG 1 cut(s) 463
BstSFI CTRYAG 3 cut(s) 84, 307, 612
BstSLI GKGCMC 2 cut(s) 458, 633
BstUI CGCG 1 cut(s) 433
BstV1I GCAGC 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 84
BsuI GTATCC 1 cut(s) 742
BsuRI GGCC 1 cut(s) 985
BtgI CCRYGG 1 cut(s) 977
BtsCI GGATG 3 cut(s) 425, 847, 946
BtsI GCAGTG 1 cut(s) 1007
BtsIMutI CAGTG 3 cut(s) 750, 899, 1007
BtuMI TCGCGA 1 cut(s) 433
Cac8I GCNNGC 3 cut(s) 485, 709, 774
CaiI CAGNNNCTG 2 cut(s) 356, 464
CfoI GCGC 1 cut(s) 445
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 2 cut(s) 136, 461
Csp6I GTAC 6 cut(s) 221, 285, 315, 874, 885, 1035
CviAII CATG 5 cut(s) 399, 484, 545, 871, 978
CviJI RGCY 8 cut(s) 473, 657, 702, 707, 772, 785, 933, 985
CviKI_1 RGCY 8 cut(s) 473, 657, 702, 707, 772, 785, 933, 985
CviQI GTAC 6 cut(s) 221, 285, 315, 874, 885, 1035
DdeI CTNAG 6 cut(s) 28, 129, 349, 393, 703, 781
DpnI GATC 2 cut(s) 515, 543
DpnII GATC 2 cut(s) 513, 541
EaeI YGGCCR 1 cut(s) 983
Eam1104I CTCTTC 4 cut(s) 60, 192, 394, 962
EarI CTCTTC 4 cut(s) 60, 192, 394, 962
Eco130I CCWWGG 1 cut(s) 977
Eco32I GATATC 1 cut(s) 814
Eco47I GGWCC 2 cut(s) 136, 461
Eco88I CYCGRG 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 461
EcoRII CCWGG 1 cut(s) 463
EcoRV GATATC 1 cut(s) 814
EcoT14I CCWWGG 1 cut(s) 977
ErhI CCWWGG 1 cut(s) 977
Esp3I CGTCTC 1 cut(s) 429
FaeI CATG 5 cut(s) 402, 487, 548, 874, 981
FaqI GGGAC 3 cut(s) 286, 674, 776
FatI CATG 5 cut(s) 398, 483, 544, 870, 977
FauI CCCGC 1 cut(s) 849
FauNDI CATATG 1 cut(s) 155
FbaI TGATCA 1 cut(s) 541
FblI GTMKAC 1 cut(s) 17
Fnu4HI GCNGC 3 cut(s) 5, 121, 360
FokI GGATG 3 cut(s) 412, 854, 933
Fsp4HI GCNGC 3 cut(s) 5, 121, 360
FspBI CTAG 4 cut(s) 218, 575, 999, 1039
GlaI GCGC 1 cut(s) 444
GluI GCNGC 3 cut(s) 5, 121, 360
GsaI CCCAGC 1 cut(s) 661
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 1 cut(s) 985
HapII CCGG 1 cut(s) 708
HhaI GCGC 1 cut(s) 445
Hin1II CATG 5 cut(s) 402, 487, 548, 874, 981
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HincII GTYRAC 2 cut(s) 18, 580
HindII GTYRAC 2 cut(s) 18, 580
HindIII AAGCTT 1 cut(s) 770
HinfI GANTC 1 cut(s) 353
HpaII CCGG 1 cut(s) 708
HphI GGTGA 2 cut(s) 545, 683
Hpy166II GTNNAC 6 cut(s) 18, 315, 456, 580, 631, 674
Hpy188I TCNGA 5 cut(s) 352, 513, 595, 733, 909
Hpy188III TCNNGA 5 cut(s) 377, 379, 432, 551, 764
Hpy8I GTNNAC 6 cut(s) 18, 315, 456, 580, 631, 674
Hpy99I CGWCG 2 cut(s) 16, 19
HpyAV CCTTC 2 cut(s) 524, 692
HpyCH4III ACNGT 4 cut(s) 266, 319, 418, 894
HpyCH4IV ACGT 3 cut(s) 98, 438, 676
HpyCH4V TGCA 6 cut(s) 159, 240, 456, 621, 631, 1012
HpyF10VI GCNNNNNNNGC 3 cut(s) 493, 708, 782
HpyF3I CTNAG 6 cut(s) 28, 129, 349, 393, 703, 781
HpySE526I ACGT 3 cut(s) 98, 438, 676
Hsp92II CATG 5 cut(s) 402, 487, 548, 874, 981
HspAI GCGC 1 cut(s) 443
KroI GCCGGC 1 cut(s) 707
KroNI GCCGGC 1 cut(s) 709
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 2 cut(s) 513, 541
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 1 cut(s) 766
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 2 cut(s) 194, 843
MaeI CTAG 4 cut(s) 218, 575, 999, 1039
MaeII ACGT 3 cut(s) 98, 438, 676
MalI GATC 2 cut(s) 515, 543
MboI GATC 2 cut(s) 513, 541
MboII GAAGA 8 cut(s) 47, 86, 89, 179, 323, 336, 381, 949
MhlI GDGCHC 2 cut(s) 458, 633
MlsI TGGCCA 1 cut(s) 985
MluCI AATT 4 cut(s) 293, 368, 713, 900
MluNI TGGCCA 1 cut(s) 985
MmeI TCCRAC 2 cut(s) 114, 675
Mox20I TGGCCA 1 cut(s) 985
MroNI GCCGGC 1 cut(s) 707
MscI TGGCCA 1 cut(s) 985
MseI TTAA 2 cut(s) 291, 296
MslI CAYNNNNRTG 4 cut(s) 202, 403, 501, 626
Msp20I TGGCCA 1 cut(s) 985
MspI CCGG 1 cut(s) 708
MspR9I CCNGG 1 cut(s) 465
Mva1269I GAATGC 2 cut(s) 362, 623
MvaI CCWGG 1 cut(s) 465
MvnI CGCG 1 cut(s) 433
MwoI GCNNNNNNNGC 3 cut(s) 493, 708, 782
NaeI GCCGGC 1 cut(s) 709
NcoI CCATGG 1 cut(s) 977
NdeI CATATG 1 cut(s) 155
NdeII GATC 2 cut(s) 513, 541
NgoMIV GCCGGC 1 cut(s) 707
NlaIII CATG 5 cut(s) 402, 487, 548, 874, 981
NruI TCGCGA 1 cut(s) 433
NspI RCATGY 2 cut(s) 402, 487
OliI CACNNNNGTG 2 cut(s) 501, 626
PaeI GCATGC 1 cut(s) 487
PaeR7I CTCGAG 1 cut(s) 377
PciI ACATGT 1 cut(s) 398
PciSI GCTCTTC 1 cut(s) 192
PctI GAATGC 2 cut(s) 362, 623
PdiI GCCGGC 1 cut(s) 709
PfeI GAWTC 1 cut(s) 353
PflMI CCANNNNNTGG 2 cut(s) 177, 894
PkrI GCNGC 3 cut(s) 6, 122, 361
PpuMI RGGWCCY 1 cut(s) 461
PscI ACATGT 1 cut(s) 398
PshAI GACNNNNGTC 1 cut(s) 895
Psp5II RGGWCCY 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 463
PspFI CCCAGC 1 cut(s) 657
PspGI CCWGG 1 cut(s) 463
PspPI GGNCC 2 cut(s) 136, 461
PspPPI RGGWCCY 1 cut(s) 461
PsrI GAACNNNNNNTAC 1 cut(s) 1018
PstNI CAGNNNCTG 2 cut(s) 356, 464
RruI TCGCGA 1 cut(s) 433
RsaI GTAC 6 cut(s) 222, 286, 316, 875, 886, 1036
RsaNI GTAC 6 cut(s) 221, 285, 315, 874, 885, 1035
RseI CAYNNNNRTG 4 cut(s) 202, 403, 501, 626
SalI GTCGAC 1 cut(s) 16
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 291, 296
SatI GCNGC 3 cut(s) 5, 121, 360
Sau3AI GATC 2 cut(s) 513, 541
Sau96I GGNCC 2 cut(s) 136, 461
ScaI AGTACT 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 2 cut(s) 458, 633
SfaNI GCATC 2 cut(s) 194, 843
SfcI CTRYAG 3 cut(s) 84, 307, 612
Sfr274I CTCGAG 1 cut(s) 377
SinI GGWCC 2 cut(s) 136, 461
SlaI CTCGAG 1 cut(s) 377
SmiMI CAYNNNNRTG 4 cut(s) 202, 403, 501, 626
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
SphI GCATGC 1 cut(s) 487
Sse9I AATT 4 cut(s) 293, 368, 713, 900
SsiI CCGC 3 cut(s) 5, 359, 856
SspI AATATT 2 cut(s) 526, 740
SspMI CTAG 4 cut(s) 218, 575, 999, 1039
StyD4I CCNGG 1 cut(s) 463
StyI CCWWGG 1 cut(s) 977
TaaI ACNGT 4 cut(s) 266, 319, 418, 894
TaiI ACGT 3 cut(s) 101, 441, 679
TaqI TCGA 3 cut(s) 17, 202, 378
TasI AATT 4 cut(s) 293, 368, 713, 900
TatI WGTACW 3 cut(s) 284, 314, 873
TauI GCSGC 2 cut(s) 7, 362
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 2 cut(s) 291, 296
Tru9I TTAA 2 cut(s) 291, 296
TscAI CASTG 3 cut(s) 750, 899, 1014
TseI GCWGC 1 cut(s) 120
TspDTI ATGAA 1 cut(s) 223
TspGWI ACGGA 1 cut(s) 854
TspRI CASTG 3 cut(s) 750, 899, 1014
Van91I CCANNNNNTGG 2 cut(s) 177, 894
VneI GTGCAC 2 cut(s) 454, 629
VpaK11BI GGWCC 2 cut(s) 136, 461
XapI RAATTY 1 cut(s) 368
XceI RCATGY 2 cut(s) 402, 487
XhoI CTCGAG 1 cut(s) 377
XmiI GTMKAC 1 cut(s) 17
XspI CTAG 4 cut(s) 218, 575, 999, 1039
ZrmI AGTACT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.