Rh1DG124600

Dip2/Utp12 Family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000668
Physical Location & Seq
Forward (+)
22618240 .. 22621816
3577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG124600.1

Sequence Viewer

Length: 936 bp
ATGTCGTTGTTCAATTTTTATTGTCGATTACTCGATTTTGATCTTAAGAAACTCGAAGGTCAAGAAGGTCAAGTGAAACCGTCCTCCAGTTCTGTGATTTCGACGACTCCGGCAACCTGGCAAGGAGCATACGATTGGGAGAATCAGAAGATGAAGACTAAAAAGTCAAGTAAGAAGCGTGCAGCACTGGAGCTAGATACTCCGGCTATTAAAGACAAGGTTGAAATTGGTCATGGAGAGACTGCAGATGGAGTCCTTGGTGATCAGGATTTGAACGAACCAACCATGGGAGAAAAACTTGCTAGTTTGAATATAGTACCTGATGATAGAGTGGCGAGCCAAAATAAAGAAGGCTCTTCTCTCCATGCAAAGCCTCCGAGTGCAGACTCTGTTCATATTTTGCTTAAGCAAGCACTACATGCTGATGACCGTGCCCTTCTATTTGAGTGCTTATACACCCAAGATGAGAAGGTCATTGCAAAGTCTGTCTCTCAATTGAATCCAGCTGGTGTTTTGAAGCTCTTACAATCTCTCATATCTCTTATTGAGTCAAGGGGTGCAATTTTGGCGTGTGCACTTCCATGGCTGAGAAGTCTACTTCTTCAACACGCAAGTGGGATAGTGTCTCAAGAATCTTCTTTAAGTGCCTTGAACTCTTTATATCAGCTCATTGAGTCCAGAGTTTCCACTTTTCAGTCAGCTCTTCAACTATCAAGTGTTTTAGACTTGCTATATACAGGGGTTGTTGATGATTTGGATGATGAGAATGGCACTACAGGTCCAGTTATTTACGAGGACAAAGATAGTGATGAAGAGGAATCTGAGGACGCCATGGAGACTGATCAAGACGATGAAGATGGTGAGGATTTGGATGCAGAACTTGGTGGTGTTAGCGACTTCGAAGGAATTGAAGGACTTGATGACTTGAGCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Utp12

Protein Analysis

311

Amino Acids

33.85

Weight (kDa)

4.29

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Utp12 PF04003 143 - 244 1.3e-16 Dip2/Utp12 Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 163
AccI GTMKAC 1 cut(s) 595
AcyI GRCGYC 1 cut(s) 828
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 287
AflII CTTAAG 2 cut(s) 44, 404
AjnI CCWGG 1 cut(s) 116
AleI CACNNNNGTG 1 cut(s) 612
AluBI AGCT 5 cut(s) 193, 506, 520, 667, 701
AluI AGCT 5 cut(s) 193, 506, 520, 667, 701
Alw21I GWGCWC 1 cut(s) 577
Alw26I GTCTC 4 cut(s) 233, 493, 630, 830
Alw44I GTGCAC 1 cut(s) 573
AlwNI CAGNNNCTG 1 cut(s) 389
ApaLI GTGCAC 1 cut(s) 573
ApeKI GCWGC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 779
AsuHPI GGTGA 2 cut(s) 272, 872
AsuII TTCGAA 1 cut(s) 900
AvaII GGWCC 1 cut(s) 779
BaeGI GKGCMC 2 cut(s) 436, 577
BbsI GAAGAC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 577
BbvI GCAGC 1 cut(s) 194
BccI CCATC 2 cut(s) 242, 851
BciT130I CCWGG 1 cut(s) 118
BclI TGATCA 2 cut(s) 262, 841
BcoDI GTCTC 4 cut(s) 233, 493, 630, 830
BfaI CTAG 2 cut(s) 194, 303
BfmI CTRYAG 2 cut(s) 243, 774
BfrI CTTAAG 2 cut(s) 44, 404
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 779
BmgT120I GGNCC 1 cut(s) 779
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 862
BpiI GAAGAC 1 cut(s) 161
BpmI CTGGAG 2 cut(s) 70, 209
Bpu14I TTCGAA 1 cut(s) 900
BpuEI CTTGAG 1 cut(s) 612
BsaBI GATNNNNATC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 828
BsaJI CCNNGG 4 cut(s) 256, 285, 581, 831
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 3 cut(s) 87, 192, 782
Bse3DI GCAATG 1 cut(s) 474
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 4 cut(s) 256, 285, 581, 831
BseGI GGATG 2 cut(s) 763, 877
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 2 cut(s) 578, 813
BseNI ACTGG 3 cut(s) 87, 192, 782
BseSI GKGCMC 2 cut(s) 436, 577
BseXI GCAGC 1 cut(s) 194
BsgI GTGCAG 2 cut(s) 201, 402
BsiHKAI GWGCWC 1 cut(s) 577
BsiSI CCGG 2 cut(s) 110, 203
BslI CCNNNNNNNGG 1 cut(s) 287
BsmAI GTCTC 4 cut(s) 233, 493, 630, 830
Bsp119I TTCGAA 1 cut(s) 900
Bsp1286I GDGCHC 2 cut(s) 436, 577
Bsp143I GATC 3 cut(s) 40, 262, 841
Bsp19I CCATGG 3 cut(s) 285, 581, 831
BspCNI CTCAG 2 cut(s) 579, 814
BspMAI CTGCAG 1 cut(s) 247
BspQI GCTCTTC 2 cut(s) 361, 708
BspT104I TTCGAA 1 cut(s) 900
BspTI CTTAAG 2 cut(s) 44, 404
BsrDI GCAATG 1 cut(s) 474
BsrI ACTGG 3 cut(s) 87, 192, 782
BssECI CCNNGG 4 cut(s) 256, 285, 581, 831
BssMI GATC 3 cut(s) 40, 262, 841
BssNI GRCGYC 1 cut(s) 828
BssT1I CCWWGG 4 cut(s) 256, 285, 581, 831
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 81, 431
Bst6I CTCTTC 3 cut(s) 361, 708, 807
BstACI GRCGYC 1 cut(s) 828
BstAFI CTTAAG 2 cut(s) 44, 404
BstAPI GCANNNNNTGC 1 cut(s) 419
BstBI TTCGAA 1 cut(s) 900
BstC8I GCNNGC 3 cut(s) 180, 337, 411
BstDEI CTNAG 2 cut(s) 587, 822
BstDSI CCRYGG 3 cut(s) 285, 581, 831
BstF5I GGATG 2 cut(s) 763, 877
BstKTI GATC 3 cut(s) 43, 265, 844
BstMAI GTCTC 4 cut(s) 233, 493, 630, 830
BstMBI GATC 3 cut(s) 40, 262, 841
BstMWI GCNNNNNNNGC 2 cut(s) 419, 566
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 2 cut(s) 243, 774
BstSLI GKGCMC 2 cut(s) 436, 577
BstV1I GCAGC 1 cut(s) 194
BstV2I GAAGAC 1 cut(s) 161
BtgI CCRYGG 3 cut(s) 285, 581, 831
BtsCI GGATG 2 cut(s) 763, 877
BtsIMutI CAGTG 1 cut(s) 185
Cac8I GCNNGC 3 cut(s) 180, 337, 411
CaiI CAGNNNCTG 1 cut(s) 389
Cfr13I GGNCC 1 cut(s) 779
CseI GACGC 1 cut(s) 836
Csp6I GTAC 1 cut(s) 317
CviAII CATG 6 cut(s) 233, 286, 365, 419, 582, 832
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 2 cut(s) 587, 822
DpnI GATC 3 cut(s) 42, 264, 843
DpnII GATC 3 cut(s) 40, 262, 841
DrdI GACNNNNNNGTC 1 cut(s) 163
DseDI GACNNNNNNGTC 1 cut(s) 163
Eam1104I CTCTTC 3 cut(s) 361, 708, 807
EarI CTCTTC 3 cut(s) 361, 708, 807
Eco130I CCWWGG 4 cut(s) 256, 285, 581, 831
Eco47I GGWCC 1 cut(s) 779
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 4 cut(s) 256, 285, 581, 831
ErhI CCWWGG 4 cut(s) 256, 285, 581, 831
FaeI CATG 6 cut(s) 236, 289, 368, 422, 585, 835
FatI CATG 6 cut(s) 232, 285, 364, 418, 581, 831
FbaI TGATCA 2 cut(s) 262, 841
FblI GTMKAC 1 cut(s) 595
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 2 cut(s) 770, 884
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 2 cut(s) 194, 303
GluI GCNGC 1 cut(s) 183
GsuI CTGGAG 2 cut(s) 70, 209
HapII CCGG 2 cut(s) 110, 203
HgaI GACGC 1 cut(s) 836
Hin1I GRCGYC 1 cut(s) 828
Hin1II CATG 6 cut(s) 236, 289, 368, 422, 585, 835
HinfI GANTC 9 cut(s) 106, 142, 252, 386, 499, 548, 632, 674, 818
HpaII CCGG 2 cut(s) 110, 203
HphI GGTGA 2 cut(s) 272, 872
Hpy166II GTNNAC 2 cut(s) 575, 596
Hpy188I TCNGA 3 cut(s) 147, 378, 823
Hpy188III TCNNGA 5 cut(s) 62, 266, 629, 678, 845
Hpy8I GTNNAC 2 cut(s) 575, 596
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 7 cut(s) 50, 59, 344, 446, 463, 896, 905
HpyCH4III ACNGT 2 cut(s) 81, 431
HpyCH4V TGCA 8 cut(s) 182, 245, 368, 383, 479, 560, 575, 875
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 566
HpyF3I CTNAG 2 cut(s) 587, 822
Hsp92I GRCGYC 1 cut(s) 828
Hsp92II CATG 6 cut(s) 236, 289, 368, 422, 585, 835
Ksp22I TGATCA 2 cut(s) 262, 841
Kzo9I GATC 3 cut(s) 40, 262, 841
LguI GCTCTTC 2 cut(s) 361, 708
LmnI GCTCC 2 cut(s) 125, 190
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 1 cut(s) 862
MaeI CTAG 2 cut(s) 194, 303
MalI GATC 3 cut(s) 42, 264, 843
MboI GATC 3 cut(s) 40, 262, 841
MboII GAAGA 8 cut(s) 160, 166, 348, 593, 627, 695, 824, 866
MfeI CAATTG 1 cut(s) 494
MhlI GDGCHC 2 cut(s) 436, 577
MluCI AATT 5 cut(s) 13, 225, 494, 561, 906
MlyI GAGTC 5 cut(s) 100, 261, 380, 557, 683
MnlI CCTC 6 cut(s) 94, 384, 787, 808, 817, 856
MseI TTAA 4 cut(s) 45, 210, 405, 641
MslI CAYNNNNRTG 3 cut(s) 423, 580, 612
MspA1I CMGCKG 1 cut(s) 506
MspCI CTTAAG 2 cut(s) 44, 404
MspI CCGG 2 cut(s) 110, 203
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 494
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 419, 566
NcoI CCATGG 3 cut(s) 285, 581, 831
NdeII GATC 3 cut(s) 40, 262, 841
NlaIII CATG 6 cut(s) 236, 289, 368, 422, 585, 835
NspI RCATGY 1 cut(s) 422
NspV TTCGAA 1 cut(s) 900
OliI CACNNNNGTG 1 cut(s) 612
PciSI GCTCTTC 2 cut(s) 361, 708
PfeI GAWTC 4 cut(s) 142, 499, 632, 818
PkrI GCNGC 1 cut(s) 184
PleI GAGTC 5 cut(s) 100, 260, 380, 556, 682
PpsI GAGTC 5 cut(s) 100, 260, 380, 556, 682
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspPI GGNCC 1 cut(s) 779
PstI CTGCAG 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 389
PvuII CAGCTG 1 cut(s) 506
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 3 cut(s) 423, 580, 612
SapI GCTCTTC 2 cut(s) 361, 708
SaqAI TTAA 4 cut(s) 45, 210, 405, 641
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 3 cut(s) 40, 262, 841
Sau96I GGNCC 1 cut(s) 779
SchI GAGTC 5 cut(s) 100, 261, 380, 557, 683
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 2 cut(s) 436, 577
SfaNI GCATC 1 cut(s) 862
SfcI CTRYAG 2 cut(s) 243, 774
SfuI TTCGAA 1 cut(s) 900
SinI GGWCC 1 cut(s) 779
SmiMI CAYNNNNRTG 3 cut(s) 423, 580, 612
SmlI CTYRAG 4 cut(s) 44, 404, 627, 925
SmoI CTYRAG 4 cut(s) 44, 404, 627, 925
Sse9I AATT 5 cut(s) 13, 225, 494, 561, 906
SspMI CTAG 2 cut(s) 194, 303
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 4 cut(s) 256, 285, 581, 831
TaaI ACNGT 2 cut(s) 81, 431
TaqI TCGA 5 cut(s) 25, 33, 54, 101, 900
TasI AATT 5 cut(s) 13, 225, 494, 561, 906
TfiI GAWTC 4 cut(s) 142, 499, 632, 818
Tru1I TTAA 4 cut(s) 45, 210, 405, 641
Tru9I TTAA 4 cut(s) 45, 210, 405, 641
TscAI CASTG 1 cut(s) 192
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 4 cut(s) 167, 383, 825, 867
TspRI CASTG 1 cut(s) 192
Vha464I CTTAAG 2 cut(s) 44, 404
VneI GTGCAC 1 cut(s) 573
VpaK11BI GGWCC 1 cut(s) 779
XceI RCATGY 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 595
XspI CTAG 2 cut(s) 194, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.