RchiOBHm_Chr5g0081171

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000668
Physical Location & Seq
Forward (+)
87179367 .. 87180371
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35543

Sequence Viewer

Length: 1005 bp
ATGGGTTTCCACGGTCTGAAAGAAAAGCCATATGTGGTAGGAACATGTAATGATTTAGTTTTGTGCTGCCAAACTCGACATGACCAAGACCAACTTGATTTCTACATTTGCAATCCATGCACAAGGCAATGGATTGCTCTTCCTCCCACCACTCGACGTTGCACGAATGTACCAGTTGGATTCATCTGTGATCGCTACTATGAGGAAAATAGTACTAGTGGTACCAATAGTACTGTTAATATTAAAAAGGACTACAGGTGCAAGGTTGTGAGAATTCTTCCCCACGATTTATCTGAAGATAACTATTTCACTCATTTTTCCAAATTCATTGTTGAGGTATTCTCTTTCGAGACTGGTGAATGGAGAGAGTCAATTGTATCGTCCCCACGAAGCATTAGGTTTGAACCTGCTACTAGCGTTGCTTACAATGGAATGTTGTATTGGACATATTGGCAATATGAGTCGGTTGGCCAGATCGGGCTTATTGGGTTGGATCCTTTTGTGATCGGCAATAGCAGTGCTAGCCCTAATGGTGATGAGACTGTTGACGATGATCATTACCAATTTCGTCTCTTTGATGCAGTTTATTGTGGTTTTGGTTTCGACATGCCATGGATATGTATGCGCCGAGGGCGTCTGCAAATGTGGGGCTACAATTACCGGGACGCTGATTTGACGGTTTGGGAGTTAACATGTGATGATGATCTTGGATCAGCTGACGAGTTCTATTTGAAAAATGTGAGTGTTTTTCCAGTAACCACCTGTGAAGTTTCTGAAAGTAATGTTGTTGTTCTAGCCTTGGACCCGAATGATGAGGATATCTTTTATGTAGAAGTGTATGATGGCAGTTTCCTAAACTATTTCATGTACAACATTTGTACAAGAAAGTGGTCAAAAGTAGCTATCACCAAGCATGTTGAAGACGATCATCTCTTTCGATTGGTGCTCCCATGGTGGCCAACACCACTTCGTAAACTACCTGTGGTTGAAGAATTACCCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

334

Amino Acids

38.85

Weight (kDa)

4.74

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 10 - 165 4.7e-10 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 415
Acc65I GGTACC 1 cut(s) 221
AccB1I GGYRCC 1 cut(s) 221
AclWI GGATC 3 cut(s) 488, 501, 718
AcoI YGGCCR 2 cut(s) 469, 956
AcsI RAATTY 2 cut(s) 273, 323
AcuI CTGAAG 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 634
AfaI GTAC 6 cut(s) 171, 214, 223, 232, 869, 880
AflIII ACRYGT 2 cut(s) 44, 692
AgsI TTSAA 4 cut(s) 404, 733, 920, 989
AhlI ACTAGT 1 cut(s) 215
AjuI GAANNNNNNNTTGG 2 cut(s) 424, 456
AluBI AGCT 2 cut(s) 716, 902
AluI AGCT 2 cut(s) 716, 902
Alw21I GWGCWC 1 cut(s) 948
Alw26I GTCTC 3 cut(s) 344, 533, 575
AlwI GGATC 3 cut(s) 488, 501, 718
AoxI GGCC 2 cut(s) 469, 956
ApeKI GCWGC 1 cut(s) 66
ApoI RAATTY 2 cut(s) 273, 323
Asp718I GGTACC 1 cut(s) 221
AspLEI GCGC 1 cut(s) 627
AspS9I GGNCC 1 cut(s) 802
AsuC2I CCSGG 1 cut(s) 662
AsuHPI GGTGA 3 cut(s) 368, 545, 898
AsuNHI GCTAGC 1 cut(s) 521
AvaII GGWCC 1 cut(s) 802
BaeI ACNNNNGTAYC 2 cut(s) 153, 186
BalI TGGCCA 2 cut(s) 471, 958
BamHI GGATCC 1 cut(s) 493
BanI GGYRCC 1 cut(s) 221
BbsI GAAGAC 1 cut(s) 927
Bbv12I GWGCWC 1 cut(s) 948
BbvI GCAGC 1 cut(s) 53
BccI CCATC 1 cut(s) 836
BclI TGATCA 1 cut(s) 553
BcnI CCSGG 1 cut(s) 662
BcoDI GTCTC 3 cut(s) 344, 533, 575
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 4 cut(s) 216, 414, 522, 794
BfmI CTRYAG 1 cut(s) 253
BfuAI ACCTGC 1 cut(s) 415
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
BmcAI AGTACT 2 cut(s) 214, 232
Bme1390I CCNGG 1 cut(s) 662
Bme18I GGWCC 1 cut(s) 802
BmgT120I GGNCC 1 cut(s) 802
BmiI GGNNCC 3 cut(s) 223, 495, 804
BmrFI CCNGG 1 cut(s) 662
BmsI GCATC 1 cut(s) 568
BmtI GCTAGC 1 cut(s) 525
BpiI GAAGAC 1 cut(s) 927
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BpuMI CCSGG 1 cut(s) 662
BsaBI GATNNNNATC 1 cut(s) 702
BsaHI GRCGYC 1 cut(s) 634
BsaJI CCNNGG 5 cut(s) 10, 611, 628, 798, 950
Bse1I ACTGG 3 cut(s) 173, 358, 752
Bse3DI GCAATG 1 cut(s) 134
Bse8I GATNNNNATC 1 cut(s) 702
BseDI CCNNGG 5 cut(s) 10, 611, 628, 798, 950
BseJI GATNNNNATC 1 cut(s) 702
BseMI GCAATG 1 cut(s) 134
BseNI ACTGG 3 cut(s) 173, 358, 752
BseXI GCAGC 1 cut(s) 53
BshFI GGCC 2 cut(s) 471, 958
BshNI GGYRCC 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 948
BsiSI CCGG 1 cut(s) 661
BslFI GGGAC 2 cut(s) 367, 677
BsmAI GTCTC 3 cut(s) 344, 533, 575
BsmBI CGTCTC 1 cut(s) 575
BsmFI GGGAC 2 cut(s) 367, 677
BsnI GGCC 2 cut(s) 471, 958
Bsp1286I GDGCHC 1 cut(s) 948
Bsp1407I TGTACA 2 cut(s) 867, 878
Bsp143I GATC 8 cut(s) 190, 474, 493, 504, 553, 703, 710, 925
Bsp19I CCATGG 2 cut(s) 611, 950
BspANI GGCC 2 cut(s) 471, 958
BspLI GGNNCC 3 cut(s) 223, 495, 804
BspMI ACCTGC 1 cut(s) 415
BspOI GCTAGC 1 cut(s) 525
BspPI GGATC 3 cut(s) 488, 501, 718
BspQI GCTCTTC 1 cut(s) 144
BspT107I GGYRCC 1 cut(s) 221
BsrDI GCAATG 1 cut(s) 134
BsrGI TGTACA 2 cut(s) 867, 878
BsrI ACTGG 3 cut(s) 173, 358, 752
BssECI CCNNGG 5 cut(s) 10, 611, 628, 798, 950
BssMI GATC 8 cut(s) 190, 474, 493, 504, 553, 703, 710, 925
BssNI GRCGYC 1 cut(s) 634
BssT1I CCWWGG 3 cut(s) 611, 798, 950
Bst4CI ACNGT 4 cut(s) 14, 235, 544, 679
Bst6I CTCTTC 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 634
BstAPI GCANNNNNTGC 1 cut(s) 117
BstAUI TGTACA 2 cut(s) 867, 878
BstC8I GCNNGC 1 cut(s) 523
BstDSI CCRYGG 3 cut(s) 10, 611, 950
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 8 cut(s) 193, 477, 496, 507, 556, 706, 713, 928
BstMAI GTCTC 3 cut(s) 344, 533, 575
BstMBI GATC 8 cut(s) 190, 474, 493, 504, 553, 703, 710, 925
BstMWI GCNNNNNNNGC 3 cut(s) 117, 522, 631
BstNSI RCATGY 4 cut(s) 48, 610, 696, 917
BstSCI CCNGG 1 cut(s) 660
BstSFI CTRYAG 1 cut(s) 253
BstV1I GCAGC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 927
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
BsuRI GGCC 2 cut(s) 471, 958
BtgI CCRYGG 3 cut(s) 10, 611, 950
BtsI GCAGTG 1 cut(s) 523
BtsIMutI CAGTG 1 cut(s) 523
BveI ACCTGC 1 cut(s) 415
Cac8I GCNNGC 1 cut(s) 523
CfoI GCGC 1 cut(s) 627
Cfr13I GGNCC 1 cut(s) 802
CseI GACGC 2 cut(s) 623, 674
Csp6I GTAC 6 cut(s) 170, 213, 222, 231, 868, 879
CviAII CATG 9 cut(s) 45, 80, 117, 607, 612, 693, 865, 914, 951
CviJI RGCY 9 cut(s) 28, 471, 481, 525, 651, 716, 797, 902, 958
CviKI_1 RGCY 9 cut(s) 28, 471, 481, 525, 651, 716, 797, 902, 958
CviQI GTAC 6 cut(s) 170, 213, 222, 231, 868, 879
DpnI GATC 8 cut(s) 192, 476, 495, 506, 555, 705, 712, 927
DpnII GATC 8 cut(s) 190, 474, 493, 504, 553, 703, 710, 925
EaeI YGGCCR 2 cut(s) 469, 956
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco130I CCWWGG 3 cut(s) 611, 798, 950
Eco32I GATATC 1 cut(s) 820
Eco47I GGWCC 1 cut(s) 802
Eco57I CTGAAG 1 cut(s) 315
EcoRI GAATTC 1 cut(s) 273
EcoRV GATATC 1 cut(s) 820
EcoT14I CCWWGG 3 cut(s) 611, 798, 950
ErhI CCWWGG 3 cut(s) 611, 798, 950
Esp3I CGTCTC 1 cut(s) 575
FaeI CATG 9 cut(s) 48, 83, 120, 610, 615, 696, 868, 917, 954
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 2 cut(s) 367, 677
FatI CATG 9 cut(s) 44, 79, 116, 606, 611, 692, 864, 913, 950
FauNDI CATATG 1 cut(s) 31
FbaI TGATCA 1 cut(s) 553
Fnu4HI GCNGC 1 cut(s) 67
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 4 cut(s) 216, 414, 522, 794
GlaI GCGC 1 cut(s) 626
GluI GCNGC 1 cut(s) 67
HaeIII GGCC 2 cut(s) 471, 958
HapII CCGG 1 cut(s) 661
HgaI GACGC 2 cut(s) 623, 674
HhaI GCGC 1 cut(s) 627
Hin1I GRCGYC 1 cut(s) 634
Hin1II CATG 9 cut(s) 48, 83, 120, 610, 615, 696, 868, 917, 954
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HincII GTYRAC 2 cut(s) 547, 690
HindII GTYRAC 2 cut(s) 547, 690
HinfI GANTC 3 cut(s) 180, 368, 461
HpaI GTTAAC 1 cut(s) 690
HpaII CCGG 1 cut(s) 661
HphI GGTGA 3 cut(s) 368, 545, 898
Hpy166II GTNNAC 3 cut(s) 547, 690, 974
Hpy188I TCNGA 3 cut(s) 18, 295, 775
Hpy188III TCNNGA 1 cut(s) 349
Hpy8I GTNNAC 3 cut(s) 547, 690, 974
Hpy99I CGWCG 1 cut(s) 159
HpyCH4III ACNGT 4 cut(s) 14, 235, 544, 679
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 6 cut(s) 111, 120, 162, 261, 581, 640
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 522, 631
HpySE526I ACGT 1 cut(s) 157
Hsp92I GRCGYC 1 cut(s) 634
Hsp92II CATG 9 cut(s) 48, 83, 120, 610, 615, 696, 868, 917, 954
HspAI GCGC 1 cut(s) 625
KpnI GGTACC 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 553
KspAI GTTAAC 1 cut(s) 690
Kzo9I GATC 8 cut(s) 190, 474, 493, 504, 553, 703, 710, 925
LguI GCTCTTC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 951
LpnPI CCDG 9 cut(s) 186, 241, 339, 420, 485, 674, 765, 775, 993
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 1 cut(s) 568
MaeI CTAG 4 cut(s) 216, 414, 522, 794
MaeII ACGT 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 754
MalI GATC 8 cut(s) 192, 476, 495, 506, 555, 705, 712, 927
MboI GATC 8 cut(s) 190, 474, 493, 504, 553, 703, 710, 925
MboII GAAGA 5 cut(s) 131, 269, 308, 932, 1001
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 1 cut(s) 948
MlsI TGGCCA 2 cut(s) 471, 958
MluCI AATT 6 cut(s) 273, 323, 372, 563, 655, 992
MluNI TGGCCA 2 cut(s) 471, 958
MlyI GAGTC 2 cut(s) 377, 470
MmeI TCCRAC 2 cut(s) 157, 471
MnlI CCTC 5 cut(s) 153, 196, 328, 623, 808
Mox20I TGGCCA 2 cut(s) 471, 958
MscI TGGCCA 2 cut(s) 471, 958
MseI TTAA 3 cut(s) 237, 243, 689
MslI CAYNNNNRTG 1 cut(s) 616
Msp20I TGGCCA 2 cut(s) 471, 958
MspA1I CMGCKG 1 cut(s) 716
MspI CCGG 1 cut(s) 661
MspR9I CCNGG 1 cut(s) 662
MunI CAATTG 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 117, 522, 631
NciI CCSGG 1 cut(s) 662
NcoI CCATGG 2 cut(s) 611, 950
NdeI CATATG 1 cut(s) 31
NdeII GATC 8 cut(s) 190, 474, 493, 504, 553, 703, 710, 925
NheI GCTAGC 1 cut(s) 521
NlaIII CATG 9 cut(s) 48, 83, 120, 610, 615, 696, 868, 917, 954
NlaIV GGNNCC 3 cut(s) 223, 495, 804
NmeAIII GCCGAG 1 cut(s) 653
NspI RCATGY 4 cut(s) 48, 610, 696, 917
PciI ACATGT 2 cut(s) 44, 692
PciSI GCTCTTC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 180
PkrI GCNGC 1 cut(s) 68
PleI GAGTC 2 cut(s) 376, 469
PpsI GAGTC 2 cut(s) 376, 469
PscI ACATGT 2 cut(s) 44, 692
PspN4I GGNNCC 3 cut(s) 223, 495, 804
PspPI GGNCC 1 cut(s) 802
PsuI RGATCY 1 cut(s) 493
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 6 cut(s) 171, 214, 223, 232, 869, 880
RsaNI GTAC 6 cut(s) 170, 213, 222, 231, 868, 879
RseI CAYNNNNRTG 1 cut(s) 616
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 3 cut(s) 237, 243, 689
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 8 cut(s) 190, 474, 493, 504, 553, 703, 710, 925
Sau96I GGNCC 1 cut(s) 802
ScaI AGTACT 2 cut(s) 214, 232
SchI GAGTC 2 cut(s) 377, 470
ScrFI CCNGG 1 cut(s) 662
SduI GDGCHC 1 cut(s) 948
SfaNI GCATC 1 cut(s) 568
SfcI CTRYAG 1 cut(s) 253
SinI GGWCC 1 cut(s) 802
SmiMI CAYNNNNRTG 1 cut(s) 616
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 6 cut(s) 273, 323, 372, 563, 655, 992
SspI AATATT 1 cut(s) 241
SspMI CTAG 4 cut(s) 216, 414, 522, 794
StyD4I CCNGG 1 cut(s) 660
StyI CCWWGG 3 cut(s) 611, 798, 950
TaaI ACNGT 4 cut(s) 14, 235, 544, 679
TaiI ACGT 1 cut(s) 160
TaqI TCGA 5 cut(s) 76, 154, 348, 603, 937
TasI AATT 6 cut(s) 273, 323, 372, 563, 655, 992
TatI WGTACW 4 cut(s) 212, 230, 867, 878
TfiI GAWTC 1 cut(s) 180
Tru1I TTAA 3 cut(s) 237, 243, 689
Tru9I TTAA 3 cut(s) 237, 243, 689
TscAI CASTG 1 cut(s) 523
TseI GCWGC 1 cut(s) 66
TspDTI ATGAA 3 cut(s) 172, 316, 853
TspRI CASTG 1 cut(s) 523
VpaK11BI GGWCC 1 cut(s) 802
XapI RAATTY 2 cut(s) 273, 323
XceI RCATGY 4 cut(s) 48, 610, 696, 917
XspI CTAG 4 cut(s) 216, 414, 522, 794
ZrmI AGTACT 2 cut(s) 214, 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.