Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000668

Physical Location & Seq

Genomic Coordinates Forward (+)

37089775 .. 37092624

Gene Structure 2850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44480.t12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAAGGCTAAAAGGTCAAGTAAGAAGCGGGCAGCAAAGGAGCTAGATAGTCCTGCTATTAAAGAGAAGGTTGAAGTTGGTCATGGAGAGGCTACAGATGGAGTCCTTACTGATTTGAATGAACCAACCATGGGAGAAAAACTTGCTAGTTTGAATATAGTTCCTGATGATAGAGTGGAGAGTCAAAATAAAGAAGGCTCTTCTCTCCATGCAATGCCTCCAAGTGCAGACTCTGTACATATTTTGCTTAAGCAAGCACTGCACGCTGATGACCGTGCCCTTCTATTAGAGTGCTTATACACCCAAGATGAGAAGGTCATTGCAAAGTCTGTCTCTCAATTGAATCCAGCTGGTGTTTTGAAGCTCTTACAATCTCTCATATCTCTTGTAGAGTCAAGGGGTGCAATTTTGGCATGTGCGCTTCCATGGCTGAGAAGTCTGCTTCTTCAACATGCAAGTGGAATAGTGTCTCAAGAATCTTCATTGAGCGCCTTGAACTCTTTATATCAGGCTACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12

Protein Analysis

174

Amino Acids

18.6

Weight (kDa)

6.52

Isoelectric Point (pI)

60.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Utp12	PF04003	91 - 171	6.7e-13	Dip2/Utp12 Family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15420 AT1G15420
fragaria_vesca	FvH4_3g30171 FvH4_3g44471 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44510 FvH4_7g12841
malus_domestica	MD12G1094900.v1.1 MD14G1090800.v1.1 MD15G1387900.v1.1 MD15G1388000.v1.1
prunus_persica	Prupe.6G012700_v2.0.a1
pyrus_communis	pycom15g34820
rosa_chinensis	RchiOBHm_Chr1g0331681 RchiOBHm_Chr5g0081171 RchiOBHm_Chr5g0081181 RchiOBHm_Chr5g0081211
rosa_laevigata	RLG00000030438 RLG00000030441 RLG00000030443 RLG00000030447 RLG00000036915 RLG00000036917 RLG00000036919
rosa_multiflora	Rmu_sc0005044.1_g000010 Rmu_sc0005044.1_g000012 Rmu_sc0007768.1_g000001 Rmu_sc0020106.1_g000001 Rmu_ssc0000432.1_g000071 Rmu_ssc0000432.1_g000072 Rmu_ssc0000432.1_g000074 Rmu_ssc0000432.1_g000076 Rmu_ssc0000432.1_g000077
rosa_roxburghii	Rroxscaffold_1G00002290 Rroxscaffold_4G00323980
rosa_rugosa	Rorug01G0031400 Rorug01G0031500 Rorug05G0473700 Rorug05G0473800 Rorug05G0473900 Rorug05G0474000 Rorug05G0474100 Rorug05G0474200 Rorug05G0474400 Rorug05G0474700
rosa_samantha	Rh1AG119200 Rh1BG040400 Rh1CG045400 Rh1CG114200 Rh1CG114300 Rh1CG221300 Rh1DG050000 Rh1DG124400 Rh1DG124600 Rh5AG526300 Rh5AG526500 Rh5BG550600 Rh5CG573500 Rh5DG560300 Rh5DG560700
rosa_wichuraiana	Rw1G009620 Rw1G009630 Rw5G048900 Rw5G048910 Rw5G048940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	28
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	131
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	7 cut(s)	74, 118, 154, 343, 361, 449, 496
AluBI	AGCT	3 cut(s)	43, 350, 364
AluI	AGCT	3 cut(s)	43, 350, 364
Alw26I	GTCTC	2 cut(s)	337, 474
AlwNI	CAGNNNCTG	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	32
AspLEI	GCGC	2 cut(s)	421, 491
BaeGI	GKGCMC	1 cut(s)	280
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	337, 474
BfaI	CTAG	2 cut(s)	44, 147
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	492
BfrI	CTTAAG	1 cut(s)	248
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	129, 425
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse3DI	GCAATG	2 cut(s)	219, 318
BseDI	CCNNGG	2 cut(s)	129, 425
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMI	GCAATG	2 cut(s)	219, 318
BseMII	CTCAG	1 cut(s)	422
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	1 cut(s)	44
BsgI	GTGCAG	2 cut(s)	245, 246
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	2 cut(s)	337, 474
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp1407I	TGTACA	1 cut(s)	235
Bsp19I	CCATGG	2 cut(s)	129, 425
BspACI	CCGC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	423
BspQI	GCTCTTC	1 cut(s)	205
BspTI	CTTAAG	1 cut(s)	248
BsrDI	GCAATG	2 cut(s)	219, 318
BsrGI	TGTACA	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	129, 425
BssT1I	CCWWGG	2 cut(s)	129, 425
Bst4CI	ACNGT	1 cut(s)	275
Bst6I	CTCTTC	1 cut(s)	205
BstAFI	CTTAAG	1 cut(s)	248
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstAUI	TGTACA	1 cut(s)	235
BstC8I	GCNNGC	3 cut(s)	30, 255, 264
BstDEI	CTNAG	1 cut(s)	431
BstDSI	CCRYGG	2 cut(s)	129, 425
BstH2I	RGCGCY	1 cut(s)	492
BstHHI	GCGC	2 cut(s)	421, 491
BstMAI	GTCTC	2 cut(s)	337, 474
BstMWI	GCNNNNNNNGC	4 cut(s)	259, 263, 410, 427
BstNSI	RCATGY	2 cut(s)	417, 455
BstSFI	CTRYAG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	44
BtgI	CCRYGG	2 cut(s)	129, 425
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	257
Cac8I	GCNNGC	3 cut(s)	30, 255, 264
CaiI	CAGNNNCTG	1 cut(s)	233
CfoI	GCGC	2 cut(s)	421, 491
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	6 cut(s)	83, 130, 209, 414, 426, 452
CviJI	RGCY	8 cut(s)	8, 43, 92, 198, 350, 364, 430, 512
CviKI_1	RGCY	8 cut(s)	8, 43, 92, 198, 350, 364, 430, 512
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	1 cut(s)	431
Eam1104I	CTCTTC	1 cut(s)	205
EarI	CTCTTC	1 cut(s)	205
Eco130I	CCWWGG	2 cut(s)	129, 425
EcoT14I	CCWWGG	2 cut(s)	129, 425
ErhI	CCWWGG	2 cut(s)	129, 425
FaeI	CATG	6 cut(s)	86, 133, 212, 417, 429, 455
FatI	CATG	6 cut(s)	82, 129, 208, 413, 425, 451
FauI	CCCGC	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	2 cut(s)	44, 147
GlaI	GCGC	2 cut(s)	420, 490
GluI	GCNGC	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	492
HhaI	GCGC	2 cut(s)	421, 491
Hin1II	CATG	6 cut(s)	86, 133, 212, 417, 429, 455
Hin6I	GCGC	2 cut(s)	419, 489
HinP1I	GCGC	2 cut(s)	419, 489
HinfI	GANTC	6 cut(s)	102, 181, 230, 343, 392, 476
Hpy188III	TCNNGA	2 cut(s)	164, 473
HpyAV	CCTTC	4 cut(s)	61, 188, 290, 307
HpyCH4III	ACNGT	1 cut(s)	275
HpyCH4V	TGCA	6 cut(s)	212, 227, 262, 323, 404, 455
HpyF10VI	GCNNNNNNNGC	4 cut(s)	259, 263, 410, 427
HpyF3I	CTNAG	1 cut(s)	431
Hsp92II	CATG	6 cut(s)	86, 133, 212, 417, 429, 455
HspAI	GCGC	2 cut(s)	419, 489
LguI	GCTCTTC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	5 cut(s)	66, 177, 336, 360, 494
Lsp1109I	GCAGC	1 cut(s)	44
MaeI	CTAG	2 cut(s)	44, 147
MboII	GAAGA	3 cut(s)	192, 437, 471
MfeI	CAATTG	1 cut(s)	338
MhlI	GDGCHC	1 cut(s)	280
MluCI	AATT	2 cut(s)	338, 405
MlyI	GAGTC	4 cut(s)	111, 190, 224, 401
MnlI	CCTC	2 cut(s)	82, 228
MseI	TTAA	2 cut(s)	60, 249
MslI	CAYNNNNRTG	2 cut(s)	267, 456
MspA1I	CMGCKG	1 cut(s)	350
MspCI	CTTAAG	1 cut(s)	248
MunI	CAATTG	1 cut(s)	338
MwoI	GCNNNNNNNGC	4 cut(s)	259, 263, 410, 427
NcoI	CCATGG	2 cut(s)	129, 425
NlaIII	CATG	6 cut(s)	86, 133, 212, 417, 429, 455
NspI	RCATGY	2 cut(s)	417, 455
PciSI	GCTCTTC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	343, 476
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	4 cut(s)	110, 189, 224, 400
PpsI	GAGTC	4 cut(s)	110, 189, 224, 400
PstNI	CAGNNNCTG	1 cut(s)	233
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
RseI	CAYNNNNRTG	2 cut(s)	267, 456
SapI	GCTCTTC	1 cut(s)	205
SaqAI	TTAA	2 cut(s)	60, 249
SatI	GCNGC	1 cut(s)	33
SchI	GAGTC	4 cut(s)	111, 190, 224, 401
SduI	GDGCHC	1 cut(s)	280
SetI	ASST	6 cut(s)	17, 45, 72, 318, 352, 366
SfcI	CTRYAG	1 cut(s)	93
SmiMI	CAYNNNNRTG	2 cut(s)	267, 456
SmlI	CTYRAG	2 cut(s)	248, 471
SmoI	CTYRAG	2 cut(s)	248, 471
Sse9I	AATT	2 cut(s)	338, 405
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	2 cut(s)	44, 147
StyI	CCWWGG	2 cut(s)	129, 425
TaaI	ACNGT	1 cut(s)	275
TasI	AATT	2 cut(s)	338, 405
TatI	WGTACW	1 cut(s)	235
TfiI	GAWTC	2 cut(s)	343, 476
Tru1I	TTAA	2 cut(s)	60, 249
Tru9I	TTAA	2 cut(s)	60, 249
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	3 cut(s)	17, 135, 471
TspRI	CASTG	1 cut(s)	264
Vha464I	CTTAAG	1 cut(s)	248
XceI	RCATGY	2 cut(s)	417, 455
XspI	CTAG	2 cut(s)	44, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.