pycom15g34820

Dip2/Utp12 Family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000668
Physical Location & Seq
Reverse (-)
34604929 .. 34607161
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g34820.6

Sequence Viewer

Length: 864 bp
ATGAAGAGTAAAAATGGAAGCAAGGCACGTGCAAAAGACATGGTTAAAGATAATGGCATGGTTGAAACTGAACCAGAAGATCTGCCAATCAAGTTTAAAAAGGGCAGTAAGAAGCGTGCTGCAGCATCGGATTCGAATCCTCCAACTGTCAAAGACATCCTTGAAATTGGTCATGGGGAGGCTGCAGATGGAGTTCTTGTTGATGATGACTTGAATGAACCAACCATGGGAGAAATTCTTGGAAGTTTAAATTTATTAGACAATGATAGACCAGAGAGCCATGATAAAGAAGAATCGTCTCTGGATCCAAAGCCTCCAAGTGCAGACTCGGTTCATATTTTACTCAAGCAAGCACTACATGCCGATGACCGTGCCCTTTTATTAGATTGCTTATACACCCAAGATGAGAAGGTCATTGCAAAGTCCATCTCAGAGTTGAATCCATCTGGTTTTTTGAAGCTCTTACAATCTCTCATTTCTATCATTCAATCGAGGGGTGCAATTTTGGCATGCGCACTTCCATGGCTTAGAAGTTTGCTTCTTCAACACGCAAGTGGTATAGTATCCCAAGAATCTTCTTTGAGTGCCTTGAACTCCTTATATCAGCTCATTGAGTCCAGAGTTTCAACTTTTCAGTCGGCTCTTCAGCTATCGAGTGTCTTAGACGTGCATTATACAGGGGTAATTGATGATGTTGACGAGAACGAGACAATCACTCCATTTATTTATGAGTCTGATACAAGTGATGGAGAGGGATCTGATGAAGCCATGGAAATCGATCAAGAGAACGAAGAGGAAGAGGAATCTGATGTTGCCCTTGATGGTGTTAGTGATTTTGAAGGAATTGAGGACATGAGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Utp12

Protein Analysis

288

Amino Acids

31.24

Weight (kDa)

4.28

Isoelectric Point (pI)

54.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 514
AclWI GGATC 3 cut(s) 299, 312, 763
AcsI RAATTY 2 cut(s) 234, 250
AcuI CTGAAG 1 cut(s) 629
AcvI CACGTG 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 227
AjiI CACGTC 1 cut(s) 667
AleI CACNNNNGTG 1 cut(s) 552
AluBI AGCT 3 cut(s) 460, 607, 649
AluI AGCT 3 cut(s) 460, 607, 649
Alw26I GTCTC 2 cut(s) 303, 701
AlwI GGATC 3 cut(s) 299, 312, 763
ApeKI GCWGC 3 cut(s) 119, 122, 182
ApoI RAATTY 2 cut(s) 234, 250
AspLEI GCGC 1 cut(s) 515
AsuII TTCGAA 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 376
BamHI GGATCC 1 cut(s) 304
BbrPI CACGTG 1 cut(s) 29
BbvI GCAGC 3 cut(s) 106, 134, 169
BccI CCATC 5 cut(s) 182, 434, 451, 740, 815
BcgI CGANNNNNNTGC 4 cut(s) 114, 148, 353, 387
BciVI GTATCC 1 cut(s) 574
BcoDI GTCTC 2 cut(s) 303, 701
BfmI CTRYAG 2 cut(s) 120, 183
BfuI GTATCC 1 cut(s) 574
BglII AGATCT 1 cut(s) 79
BisI GCNGC 3 cut(s) 120, 123, 183
BlsI GCNGC 3 cut(s) 121, 124, 184
BmgBI CACGTC 1 cut(s) 667
BmiI GGNNCC 1 cut(s) 306
BmsI GCATC 1 cut(s) 134
Bpu14I TTCGAA 1 cut(s) 134
BpuEI CTTGAG 1 cut(s) 329
Bsa29I ATCGAT 1 cut(s) 777
BsaAI YACGTR 1 cut(s) 29
BsaBI GATNNNNATC 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 225, 521, 768
BsaXI ACNNNNNCTCC 4 cut(s) 183, 213, 700, 730
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse3DI GCAATG 1 cut(s) 414
Bse8I GATNNNNATC 1 cut(s) 135
BseCI ATCGAT 1 cut(s) 777
BseDI CCNNGG 3 cut(s) 225, 521, 768
BseGI GGATG 1 cut(s) 156
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMI GCAATG 1 cut(s) 414
BseMII CTCAG 1 cut(s) 444
BseSI GKGCMC 1 cut(s) 376
BseXI GCAGC 3 cut(s) 106, 134, 169
BsgI GTGCAG 1 cut(s) 342
BshVI ATCGAT 1 cut(s) 777
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 2 cut(s) 303, 701
BsmBI CGTCTC 1 cut(s) 303
Bsp119I TTCGAA 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 376
Bsp143I GATC 4 cut(s) 79, 304, 755, 778
Bsp19I CCATGG 3 cut(s) 225, 521, 768
BspCNI CTCAG 1 cut(s) 443
BspDI ATCGAT 1 cut(s) 777
BspLI GGNNCC 1 cut(s) 306
BspMAI CTGCAG 2 cut(s) 124, 187
BspPI GGATC 3 cut(s) 299, 312, 763
BspQI GCTCTTC 1 cut(s) 648
BspT104I TTCGAA 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 414
BssECI CCNNGG 3 cut(s) 225, 521, 768
BssMI GATC 4 cut(s) 79, 304, 755, 778
BssT1I CCWWGG 3 cut(s) 225, 521, 768
Bst4CI ACNGT 2 cut(s) 148, 371
Bst6I CTCTTC 3 cut(s) 648, 786, 792
BstAPI GCANNNNNTGC 1 cut(s) 359
BstBAI YACGTR 1 cut(s) 29
BstBI TTCGAA 1 cut(s) 134
BstC8I GCNNGC 3 cut(s) 117, 351, 511
BstDEI CTNAG 3 cut(s) 430, 527, 661
BstDSI CCRYGG 3 cut(s) 225, 521, 768
BstF5I GGATG 1 cut(s) 156
BstHHI GCGC 1 cut(s) 515
BstKTI GATC 4 cut(s) 82, 307, 758, 781
BstMAI GTCTC 2 cut(s) 303, 701
BstMBI GATC 4 cut(s) 79, 304, 755, 778
BstMWI GCNNNNNNNGC 2 cut(s) 359, 506
BstNSI RCATGY 2 cut(s) 362, 513
BstSFI CTRYAG 2 cut(s) 120, 183
BstSLI GKGCMC 1 cut(s) 376
BstV1I GCAGC 3 cut(s) 106, 134, 169
BstX2I RGATCY 3 cut(s) 79, 304, 755
BstYI RGATCY 3 cut(s) 79, 304, 755
Bsu15I ATCGAT 1 cut(s) 777
BsuI GTATCC 1 cut(s) 574
BsuTUI ATCGAT 1 cut(s) 777
BtgI CCRYGG 3 cut(s) 225, 521, 768
BtrI CACGTC 1 cut(s) 667
BtsCI GGATG 1 cut(s) 156
Cac8I GCNNGC 3 cut(s) 117, 351, 511
CfoI GCGC 1 cut(s) 515
ClaI ATCGAT 1 cut(s) 777
CviJI RGCY 9 cut(s) 182, 279, 313, 460, 526, 607, 641, 649, 767
CviKI_1 RGCY 9 cut(s) 182, 279, 313, 460, 526, 607, 641, 649, 767
DdeI CTNAG 3 cut(s) 430, 527, 661
DpnI GATC 4 cut(s) 81, 306, 757, 780
DpnII GATC 4 cut(s) 79, 304, 755, 778
DraI TTTAAA 2 cut(s) 97, 249
Eam1104I CTCTTC 3 cut(s) 648, 786, 792
EarI CTCTTC 3 cut(s) 648, 786, 792
Eco130I CCWWGG 3 cut(s) 225, 521, 768
Eco57I CTGAAG 1 cut(s) 629
Eco72I CACGTG 1 cut(s) 29
EcoT14I CCWWGG 3 cut(s) 225, 521, 768
ErhI CCWWGG 3 cut(s) 225, 521, 768
Esp3I CGTCTC 1 cut(s) 303
FalI AAGNNNNNCTT 2 cut(s) 144, 176
Fnu4HI GCNGC 3 cut(s) 120, 123, 183
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 3 cut(s) 120, 123, 183
FspAI RTGCGCAY 1 cut(s) 514
FspI TGCGCA 1 cut(s) 514
GlaI GCGC 1 cut(s) 514
GluI GCNGC 3 cut(s) 120, 123, 183
HhaI GCGC 1 cut(s) 515
Hin6I GCGC 1 cut(s) 513
HinP1I GCGC 1 cut(s) 513
HincII GTYRAC 1 cut(s) 697
HindII GTYRAC 1 cut(s) 697
HinfI GANTC 9 cut(s) 131, 136, 293, 326, 439, 572, 614, 731, 803
Hpy166II GTNNAC 1 cut(s) 697
Hpy188I TCNGA 5 cut(s) 130, 433, 736, 760, 808
Hpy188III TCNNGA 3 cut(s) 302, 618, 782
Hpy8I GTNNAC 1 cut(s) 697
HpyAV CCTTC 2 cut(s) 403, 833
HpyCH4III ACNGT 2 cut(s) 148, 371
HpyCH4IV ACGT 2 cut(s) 28, 666
HpyCH4V TGCA 7 cut(s) 32, 122, 185, 323, 419, 500, 670
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 506
HpyF3I CTNAG 3 cut(s) 430, 527, 661
HpySE526I ACGT 2 cut(s) 28, 666
HspAI GCGC 1 cut(s) 513
Kzo9I GATC 4 cut(s) 79, 304, 755, 778
LguI GCTCTTC 1 cut(s) 648
LpnPI CCDG 6 cut(s) 87, 285, 287, 432, 631, 663
Lsp1109I GCAGC 3 cut(s) 106, 134, 169
LweI GCATC 1 cut(s) 134
MaeII ACGT 2 cut(s) 28, 666
MalI GATC 4 cut(s) 81, 306, 757, 780
MboI GATC 4 cut(s) 79, 304, 755, 778
MboII GAAGA 8 cut(s) 16, 89, 302, 533, 567, 635, 803, 809
MflI RGATCY 3 cut(s) 79, 304, 755
MhlI GDGCHC 1 cut(s) 376
MluCI AATT 6 cut(s) 165, 234, 250, 501, 684, 843
MlyI GAGTC 3 cut(s) 320, 623, 740
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 8 cut(s) 150, 172, 324, 486, 745, 787, 793, 841
MseI TTAA 3 cut(s) 45, 96, 248
MslI CAYNNNNRTG 3 cut(s) 363, 520, 552
MwoI GCNNNNNNNGC 2 cut(s) 359, 506
NcoI CCATGG 3 cut(s) 225, 521, 768
NdeII GATC 4 cut(s) 79, 304, 755, 778
NlaIV GGNNCC 1 cut(s) 306
NsbI TGCGCA 1 cut(s) 514
NspI RCATGY 2 cut(s) 362, 513
NspV TTCGAA 1 cut(s) 134
OliI CACNNNNGTG 1 cut(s) 552
PaeI GCATGC 1 cut(s) 513
PciSI GCTCTTC 1 cut(s) 648
PfeI GAWTC 6 cut(s) 131, 136, 293, 439, 572, 803
PkrI GCNGC 3 cut(s) 121, 124, 184
PleI GAGTC 3 cut(s) 320, 622, 739
PmaCI CACGTG 1 cut(s) 29
PmlI CACGTG 1 cut(s) 29
PpsI GAGTC 3 cut(s) 320, 622, 739
Ppu21I YACGTR 1 cut(s) 29
PspCI CACGTG 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 306
PstI CTGCAG 2 cut(s) 124, 187
PsuI RGATCY 3 cut(s) 79, 304, 755
RseI CAYNNNNRTG 3 cut(s) 363, 520, 552
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 3 cut(s) 45, 96, 248
SatI GCNGC 3 cut(s) 120, 123, 183
Sau3AI GATC 4 cut(s) 79, 304, 755, 778
SchI GAGTC 3 cut(s) 320, 623, 740
SduI GDGCHC 1 cut(s) 376
SetI ASST 6 cut(s) 31, 414, 462, 609, 651, 669
SfaNI GCATC 1 cut(s) 134
SfcI CTRYAG 2 cut(s) 120, 183
SfuI TTCGAA 1 cut(s) 134
SmiMI CAYNNNNRTG 3 cut(s) 363, 520, 552
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SphI GCATGC 1 cut(s) 513
Sse9I AATT 6 cut(s) 165, 234, 250, 501, 684, 843
StyI CCWWGG 3 cut(s) 225, 521, 768
TaaI ACNGT 2 cut(s) 148, 371
TaiI ACGT 2 cut(s) 31, 669
TaqI TCGA 4 cut(s) 134, 491, 653, 777
TasI AATT 6 cut(s) 165, 234, 250, 501, 684, 843
TfiI GAWTC 6 cut(s) 131, 136, 293, 439, 572, 803
Tru1I TTAA 3 cut(s) 45, 96, 248
Tru9I TTAA 3 cut(s) 45, 96, 248
TseI GCWGC 3 cut(s) 119, 122, 182
TspDTI ATGAA 4 cut(s) 17, 231, 323, 777
XapI RAATTY 2 cut(s) 234, 250
XceI RCATGY 2 cut(s) 362, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.