Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000668

Physical Location & Seq

Genomic Coordinates Reverse (-)

61504314 .. 61505919

Gene Structure 1606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030443

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGATCATGAGTGGATGGGAAAAGAGATCATCAGAAGTACCAACCTCCGATAAAACTCCTCCTATTCACTCAACAAGATCAAAATCCACAAATGTTAACATTGATGATCTCCCTGACTTTCTGTTGGTTGAAATCCTATGTCGGTTTCCTAGCAAGGAATTCGTTTTCCAATGCAAATGTGTTTCCAAGCATTGGCTCAATCTCATCTCAGATCCGTATTTGATTGGCCGCTTTCTACATCTTCAAAGATTTCATAAGCAAACCCCAATAGCACGTTCTCCGATAGACAGAAGAGGGGAGGAATTTCCCACTCCTAGAACGACACAGTCGTCGTCCAATCTGCTAGCCCCGCTGTTCAAAAGACTCATGAGTGATGATGATCTTGGATCAGCTGATGAATTCAATTTGAAAGAAGTGGGTGTTTATCCAGTAACCAGTAAAGTTCTTAAATATGATGATGGAGCTGTTCTTCTAGCTATGGTCCTGAATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

165

Amino Acids

18.68

Weight (kDa)

6.9

Isoelectric Point (pI)

55.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	34 - 74	1.8e-07	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15420 AT1G15420
fragaria_vesca	FvH4_3g30171 FvH4_3g44471 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44510 FvH4_7g12841
malus_domestica	MD12G1094900.v1.1 MD14G1090800.v1.1 MD15G1387900.v1.1 MD15G1388000.v1.1
prunus_persica	Prupe.6G012700_v2.0.a1
pyrus_communis	pycom15g34820
rosa_chinensis	RchiOBHm_Chr1g0331681 RchiOBHm_Chr5g0081171 RchiOBHm_Chr5g0081181 RchiOBHm_Chr5g0081211
rosa_laevigata	RLG00000030438 RLG00000030441 RLG00000030443 RLG00000030447 RLG00000036915 RLG00000036917 RLG00000036919
rosa_multiflora	Rmu_sc0005044.1_g000010 Rmu_sc0005044.1_g000012 Rmu_sc0007768.1_g000001 Rmu_sc0020106.1_g000001 Rmu_ssc0000432.1_g000071 Rmu_ssc0000432.1_g000072 Rmu_ssc0000432.1_g000074 Rmu_ssc0000432.1_g000076 Rmu_ssc0000432.1_g000077
rosa_roxburghii	Rroxscaffold_1G00002290 Rroxscaffold_4G00323980
rosa_rugosa	Rorug01G0031400 Rorug01G0031500 Rorug05G0473700 Rorug05G0473800 Rorug05G0473900 Rorug05G0474000 Rorug05G0474100 Rorug05G0474200 Rorug05G0474400 Rorug05G0474700
rosa_samantha	Rh1AG119200 Rh1BG040400 Rh1CG045400 Rh1CG114200 Rh1CG114300 Rh1CG221300 Rh1DG050000 Rh1DG124400 Rh1DG124600 Rh5AG526300 Rh5AG526500 Rh5BG550600 Rh5CG573500 Rh5DG560300 Rh5DG560700
rosa_wichuraiana	Rw1G009620 Rw1G009630 Rw5G048900 Rw5G048910 Rw5G048940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	328
AccB7I	CCANNNNNTGG	1 cut(s)	192
AciI	CCGC	2 cut(s)	229, 350
AclWI	GGATC	2 cut(s)	206, 394
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	3 cut(s)	158, 302, 398
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	5 cut(s)	131, 245, 358, 403, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	259, 291
AluBI	AGCT	3 cut(s)	392, 464, 476
AluI	AGCT	3 cut(s)	392, 464, 476
AlwI	GGATC	2 cut(s)	206, 394
AoxI	GGCC	1 cut(s)	226
ApoI	RAATTY	3 cut(s)	158, 302, 398
AspS9I	GGNCC	1 cut(s)	481
AsuNHI	GCTAGC	1 cut(s)	343
AvaII	GGWCC	1 cut(s)	481
BccI	CCATC	2 cut(s)	9, 452
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	4 cut(s)	150, 315, 344, 473
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	1 cut(s)	481
BmtI	GCTAGC	1 cut(s)	347
BsaBI	GATNNNNATC	2 cut(s)	82, 378
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	2 cut(s)	428, 435
Bse8I	GATNNNNATC	2 cut(s)	82, 378
BseGI	GGATG	1 cut(s)	20
BseJI	GATNNNNATC	2 cut(s)	82, 378
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	428, 435
BseRI	GAGGAG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	192
BsnI	GGCC	1 cut(s)	228
Bsp143I	GATC	7 cut(s)	3, 26, 77, 106, 211, 379, 386
BspACI	CCGC	2 cut(s)	229, 350
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	1 cut(s)	221
BspHI	TCATGA	2 cut(s)	6, 366
BspOI	GCTAGC	1 cut(s)	347
BspPI	GGATC	2 cut(s)	206, 394
BsrI	ACTGG	2 cut(s)	428, 435
BssMI	GATC	7 cut(s)	3, 26, 77, 106, 211, 379, 386
Bst4CI	ACNGT	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	20
BstKTI	GATC	7 cut(s)	6, 29, 80, 109, 214, 382, 389
BstMBI	GATC	7 cut(s)	3, 26, 77, 106, 211, 379, 386
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	345
CciI	TCATGA	2 cut(s)	6, 366
Cfr13I	GGNCC	1 cut(s)	481
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	2 cut(s)	7, 367
CviJI	RGCY	6 cut(s)	196, 228, 347, 392, 464, 476
CviKI_1	RGCY	6 cut(s)	196, 228, 347, 392, 464, 476
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	7 cut(s)	5, 28, 79, 108, 213, 381, 388
DpnII	GATC	7 cut(s)	3, 26, 77, 106, 211, 379, 386
DrdI	GACNNNNNNGTC	1 cut(s)	328
DseDI	GACNNNNNNGTC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	481
EcoRI	GAATTC	2 cut(s)	158, 398
FaeI	CATG	2 cut(s)	10, 370
FaiI	YATR	6 cut(s)	8, 139, 255, 368, 453, 479
FatI	CATG	2 cut(s)	6, 366
FauI	CCCGC	1 cut(s)	357
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	229
FspBI	CTAG	4 cut(s)	150, 315, 344, 473
GluI	GCNGC	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	10, 370
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HinfI	GANTC	1 cut(s)	363
HpaI	GTTAAC	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	4 cut(s)	34, 49, 211, 282
Hpy188III	TCNNGA	3 cut(s)	7, 367, 484
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	334
HpyCH4III	ACNGT	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	274
HpyCH4V	TGCA	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	1 cut(s)	208
HpySE526I	ACGT	1 cut(s)	274
Hsp92II	CATG	2 cut(s)	10, 370
Ksp22I	TGATCA	1 cut(s)	3
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	7 cut(s)	3, 26, 77, 106, 211, 379, 386
LmnI	GCTCC	1 cut(s)	461
LpnPI	CCDG	3 cut(s)	126, 441, 448
MaeI	CTAG	4 cut(s)	150, 315, 344, 473
MaeII	ACGT	1 cut(s)	274
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	7 cut(s)	5, 28, 79, 108, 213, 381, 388
MboI	GATC	7 cut(s)	3, 26, 77, 106, 211, 379, 386
MboII	GAAGA	3 cut(s)	233, 303, 461
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	4 cut(s)	158, 302, 398, 403
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	4 cut(s)	55, 69, 287, 292
MseI	TTAA	2 cut(s)	96, 447
MspA1I	CMGCKG	2 cut(s)	352, 392
MwoI	GCNNNNNNNGC	1 cut(s)	349
NdeII	GATC	7 cut(s)	3, 26, 77, 106, 211, 379, 386
NheI	GCTAGC	1 cut(s)	343
NlaIII	CATG	2 cut(s)	10, 370
PagI	TCATGA	2 cut(s)	6, 366
PcsI	WCGNNNNNNNCGW	1 cut(s)	326
PflFI	GACNNNGTC	1 cut(s)	325
PflMI	CCANNNNNTGG	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
PspPI	GGNCC	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	211
PsyI	GACNNNGTC	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	96, 447
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	7 cut(s)	3, 26, 77, 106, 211, 379, 386
Sau96I	GGNCC	1 cut(s)	481
SchI	GAGTC	1 cut(s)	357
SetI	ASST	5 cut(s)	47, 277, 394, 466, 478
SinI	GGWCC	1 cut(s)	481
Sse9I	AATT	4 cut(s)	158, 302, 398, 403
SsiI	CCGC	2 cut(s)	229, 350
SspMI	CTAG	4 cut(s)	150, 315, 344, 473
TaaI	ACNGT	1 cut(s)	327
TaiI	ACGT	1 cut(s)	277
TasI	AATT	4 cut(s)	158, 302, 398, 403
TauI	GCSGC	1 cut(s)	231
Tru1I	TTAA	2 cut(s)	96, 447
Tru9I	TTAA	2 cut(s)	96, 447
TspDTI	ATGAA	2 cut(s)	242, 411
TspGWI	ACGGA	1 cut(s)	204
Tth111I	GACNNNGTC	1 cut(s)	325
Van91I	CCANNNNNTGG	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	481
XapI	RAATTY	3 cut(s)	158, 302, 398
XspI	CTAG	4 cut(s)	150, 315, 344, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.