Rmu_sc0007768.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007768.1
OG0000668
Physical Location & Seq
Reverse (-)
2 .. 2582
2581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007768.1_g000001.1.cds

Sequence Viewer

Length: 879 bp
atgatcatgggcggatgggaaaagagatcatcagatgtaccaccatccgatagtactcctcctactcaatcacaaaaatcaaaatccacaaatgttgttagcattgatgatctccctgactctctgttggttgaaatcctatgtcggtttcctagcaaggaattcgttttccaatgcaaatgtgtttctaagcattggctcaatctcatctcagttccaaaaggggaggaattccccactcctagaacaacacagtcgtcatccaatctgctagctccactgttcaaaagactcgcgagtttccatgctttgaaaaaaaagccatatgtggtaggaacatctaatgatttagttttgtgctgccgaagtccacatgaccaacatgatttctacatttgcaatccatgcacaaggcaatggattgctcttcctcccaccactggacgtctcacgaatgtaccagttggattcatctgtgatcgctactatgaggcggaaaatagtactagtggtgatgttgatcttggatcagctgacaaattctatttgaaaaaagtgagtgtttatccagtaaccagtgaagttgctatatatggttatgctcttctagatttggatccgattgatgaggatagattttatgtaagagtgcgtactgactattttgcgtacaacgagtaccattttgcgtacaacgagttccatttcatccgtgctcgatctcaccggaaaaccgcctcaggtgggctcgctggtgaactttcgtcggggagggagagattgatgtcaccatcgaccctgccggagcgccaccaccacccccgccacgtcgcttatctcagtagatcagtcggagattctactcctccaaaacggaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

293

Amino Acids

33.23

Weight (kDa)

8.69

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 448
AccII CGCG 1 cut(s) 296
AciI CCGC 4 cut(s) 12, 494, 735, 823
AclWI GGATC 3 cut(s) 535, 611, 624
AcsI RAATTY 3 cut(s) 161, 230, 539
AcyI GRCGYC 1 cut(s) 445
AfaI GTAC 8 cut(s) 39, 55, 459, 505, 655, 671, 680, 692
AfiI CCNNNNNNNGG 2 cut(s) 440, 744
AgsI TTSAA 4 cut(s) 134, 286, 313, 550
AhlI ACTAGT 1 cut(s) 506
AjiI CACGTC 1 cut(s) 829
AluBI AGCT 2 cut(s) 275, 533
AluI AGCT 2 cut(s) 275, 533
Alw21I GWGCWC 1 cut(s) 718
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 3 cut(s) 535, 611, 624
ApeKI GCWGC 1 cut(s) 360
ApoI RAATTY 3 cut(s) 161, 230, 539
AspLEI GCGC 1 cut(s) 810
AsuHPI GGTGA 4 cut(s) 524, 716, 767, 780
AsuNHI GCTAGC 1 cut(s) 271
AxyI CCTNAGG 1 cut(s) 739
BaeI ACNNNNGTAYC 2 cut(s) 441, 474
BamHI GGATCC 1 cut(s) 616
BanII GRGCYC 1 cut(s) 750
Bbv12I GWGCWC 1 cut(s) 718
BbvI GCAGC 1 cut(s) 347
BccI CCATC 3 cut(s) 9, 52, 799
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 452
BcuI ACTAGT 1 cut(s) 506
BfaI CTAG 5 cut(s) 153, 243, 272, 507, 608
BfoI RGCGCY 1 cut(s) 811
BisI GCNGC 1 cut(s) 361
BlsI GCNGC 1 cut(s) 362
BmcAI AGTACT 2 cut(s) 55, 505
BmgBI CACGTC 1 cut(s) 829
BmiI GGNNCC 1 cut(s) 618
BmtI GCTAGC 1 cut(s) 275
BsaBI GATNNNNATC 2 cut(s) 519, 615
BsaHI GRCGYC 1 cut(s) 445
BsaWI WCCGGW 1 cut(s) 726
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 744
Bse1I ACTGG 4 cut(s) 445, 461, 569, 576
Bse21I CCTNAGG 1 cut(s) 739
Bse3DI GCAATG 1 cut(s) 422
Bse8I GATNNNNATC 2 cut(s) 519, 615
BseGI GGATG 4 cut(s) 20, 44, 260, 708
BseJI GATNNNNATC 2 cut(s) 519, 615
BseLI CCNNNNNNNGG 2 cut(s) 440, 744
BseMI GCAATG 1 cut(s) 422
BseMII CTCAG 3 cut(s) 225, 753, 853
BseNI ACTGG 4 cut(s) 445, 461, 569, 576
BseRI GAGGAG 2 cut(s) 48, 855
BseXI GCAGC 1 cut(s) 347
Bsh1236I CGCG 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 718
BsiSI CCGG 2 cut(s) 727, 803
BslI CCNNNNNNNGG 2 cut(s) 440, 744
BsmAI GTCTC 1 cut(s) 452
BsmBI CGTCTC 1 cut(s) 452
Bsp1286I GDGCHC 2 cut(s) 718, 750
Bsp143I GATC 9 cut(s) 3, 26, 109, 478, 520, 527, 616, 719, 845
Bsp68I TCGCGA 1 cut(s) 296
BspACI CCGC 4 cut(s) 12, 494, 735, 823
BspCNI CTCAG 3 cut(s) 224, 752, 852
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 618
BspOI GCTAGC 1 cut(s) 275
BspPI GGATC 3 cut(s) 535, 611, 624
BspQI GCTCTTC 2 cut(s) 432, 609
BsrDI GCAATG 1 cut(s) 422
BsrI ACTGG 4 cut(s) 445, 461, 569, 576
BssMI GATC 9 cut(s) 3, 26, 109, 478, 520, 527, 616, 719, 845
BssNI GRCGYC 1 cut(s) 445
Bst4CI ACNGT 2 cut(s) 255, 282
Bst6I CTCTTC 2 cut(s) 432, 609
BstACI GRCGYC 1 cut(s) 445
BstAPI GCANNNNNTGC 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 273, 750
BstDEI CTNAG 4 cut(s) 189, 211, 739, 839
BstF5I GGATG 4 cut(s) 20, 44, 260, 708
BstFNI CGCG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 811
BstHHI GCGC 1 cut(s) 810
BstKTI GATC 9 cut(s) 6, 29, 112, 481, 523, 530, 619, 722, 848
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 9 cut(s) 3, 26, 109, 478, 520, 527, 616, 719, 845
BstMWI GCNNNNNNNGC 1 cut(s) 405
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 347
BstX2I RGATCY 1 cut(s) 616
BstYI RGATCY 1 cut(s) 616
Bsu36I CCTNAGG 1 cut(s) 739
BtrI CACGTC 1 cut(s) 829
BtsCI GGATG 4 cut(s) 20, 44, 260, 708
BtsIMutI CAGTG 3 cut(s) 278, 438, 583
BtuMI TCGCGA 1 cut(s) 296
Cac8I GCNNGC 2 cut(s) 273, 750
CfoI GCGC 1 cut(s) 810
Csp6I GTAC 8 cut(s) 38, 54, 458, 504, 654, 670, 679, 691
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 5 cut(s) 7, 305, 374, 383, 405
CviJI RGCY 5 cut(s) 199, 275, 322, 533, 748
CviKI_1 RGCY 5 cut(s) 199, 275, 322, 533, 748
CviQI GTAC 8 cut(s) 38, 54, 458, 504, 654, 670, 679, 691
DdeI CTNAG 4 cut(s) 189, 211, 739, 839
DpnI GATC 9 cut(s) 5, 28, 111, 480, 522, 529, 618, 721, 847
DpnII GATC 9 cut(s) 3, 26, 109, 478, 520, 527, 616, 719, 845
Eam1104I CTCTTC 2 cut(s) 432, 609
EarI CTCTTC 2 cut(s) 432, 609
EciI GGCGGA 2 cut(s) 27, 509
Eco24I GRGCYC 1 cut(s) 750
Eco81I CCTNAGG 1 cut(s) 739
EcoRI GAATTC 2 cut(s) 161, 230
EcoT38I GRGCYC 1 cut(s) 750
Esp3I CGTCTC 1 cut(s) 452
FaeI CATG 5 cut(s) 10, 308, 377, 386, 408
FatI CATG 5 cut(s) 6, 304, 373, 382, 404
FauI CCCGC 1 cut(s) 830
FauNDI CATATG 1 cut(s) 325
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 361
FokI GGATG 4 cut(s) 27, 31, 247, 695
FriOI GRGCYC 1 cut(s) 750
Fsp4HI GCNGC 1 cut(s) 361
FspBI CTAG 5 cut(s) 153, 243, 272, 507, 608
GlaI GCGC 1 cut(s) 809
GluI GCNGC 1 cut(s) 361
HaeII RGCGCY 1 cut(s) 811
HapII CCGG 2 cut(s) 727, 803
HhaI GCGC 1 cut(s) 810
Hin1I GRCGYC 1 cut(s) 445
Hin1II CATG 5 cut(s) 10, 308, 377, 386, 408
Hin6I GCGC 1 cut(s) 808
HinP1I GCGC 1 cut(s) 808
HinfI GANTC 4 cut(s) 119, 291, 468, 857
HpaII CCGG 2 cut(s) 727, 803
HphI GGTGA 4 cut(s) 524, 716, 767, 780
Hpy166II GTNNAC 2 cut(s) 371, 758
Hpy188I TCNGA 4 cut(s) 34, 49, 621, 854
Hpy188III TCNNGA 3 cut(s) 295, 451, 608
Hpy8I GTNNAC 2 cut(s) 371, 758
Hpy99I CGWCG 2 cut(s) 769, 833
HpyCH4III ACNGT 2 cut(s) 255, 282
HpyCH4IV ACGT 2 cut(s) 445, 828
HpyCH4V TGCA 3 cut(s) 177, 399, 408
HpyF10VI GCNNNNNNNGC 1 cut(s) 405
HpyF3I CTNAG 4 cut(s) 189, 211, 739, 839
HpySE526I ACGT 2 cut(s) 445, 828
Hsp92I GRCGYC 1 cut(s) 445
Hsp92II CATG 5 cut(s) 10, 308, 377, 386, 408
HspAI GCGC 1 cut(s) 808
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 9 cut(s) 3, 26, 109, 478, 520, 527, 616, 719, 845
LguI GCTCTTC 2 cut(s) 432, 609
LmnI GCTCC 2 cut(s) 280, 805
Lsp1109I GCAGC 1 cut(s) 347
MaeI CTAG 5 cut(s) 153, 243, 272, 507, 608
MaeII ACGT 2 cut(s) 445, 828
MaeIII GTNAC 2 cut(s) 571, 786
MalI GATC 9 cut(s) 5, 28, 111, 480, 522, 529, 618, 721, 847
MboI GATC 9 cut(s) 3, 26, 109, 478, 520, 527, 616, 719, 845
MboII GAAGA 2 cut(s) 419, 596
MflI RGATCY 1 cut(s) 616
MhlI GDGCHC 2 cut(s) 718, 750
MluCI AATT 3 cut(s) 161, 230, 539
MlyI GAGTC 2 cut(s) 113, 285
MmeI TCCRAC 2 cut(s) 445, 832
MnlI CCTC 8 cut(s) 69, 220, 441, 484, 622, 748, 765, 876
MspA1I CMGCKG 1 cut(s) 533
MspI CCGG 2 cut(s) 727, 803
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 405
NdeI CATATG 1 cut(s) 325
NdeII GATC 9 cut(s) 3, 26, 109, 478, 520, 527, 616, 719, 845
NheI GCTAGC 1 cut(s) 271
NlaIII CATG 5 cut(s) 10, 308, 377, 386, 408
NlaIV GGNNCC 1 cut(s) 618
NmuCI GTSAC 1 cut(s) 786
NruI TCGCGA 1 cut(s) 296
PciSI GCTCTTC 2 cut(s) 432, 609
PfeI GAWTC 2 cut(s) 468, 857
PkrI GCNGC 1 cut(s) 362
PleI GAGTC 2 cut(s) 113, 285
PpsI GAGTC 2 cut(s) 113, 285
PspN4I GGNNCC 1 cut(s) 618
PsrI GAACNNNNNNTAC 2 cut(s) 683, 715
PsuI RGATCY 1 cut(s) 616
PvuII CAGCTG 1 cut(s) 533
RruI TCGCGA 1 cut(s) 296
RsaI GTAC 8 cut(s) 39, 55, 459, 505, 655, 671, 680, 692
RsaNI GTAC 8 cut(s) 38, 54, 458, 504, 654, 670, 679, 691
SapI GCTCTTC 2 cut(s) 432, 609
SatI GCNGC 1 cut(s) 361
Sau3AI GATC 9 cut(s) 3, 26, 109, 478, 520, 527, 616, 719, 845
ScaI AGTACT 2 cut(s) 55, 505
SchI GAGTC 2 cut(s) 113, 285
SduI GDGCHC 2 cut(s) 718, 750
SetI ASST 5 cut(s) 277, 448, 535, 745, 831
SpeI ACTAGT 1 cut(s) 506
Sse9I AATT 3 cut(s) 161, 230, 539
SsiI CCGC 4 cut(s) 12, 494, 735, 823
SspMI CTAG 5 cut(s) 153, 243, 272, 507, 608
TaaI ACNGT 2 cut(s) 255, 282
TaiI ACGT 2 cut(s) 448, 831
TaqI TCGA 2 cut(s) 718, 794
TasI AATT 3 cut(s) 161, 230, 539
TatI WGTACW 2 cut(s) 53, 503
TfiI GAWTC 2 cut(s) 468, 857
TscAI CASTG 3 cut(s) 285, 445, 583
TseFI GTSAC 1 cut(s) 786
TseI GCWGC 1 cut(s) 360
Tsp45I GTSAC 1 cut(s) 786
TspDTI ATGAA 2 cut(s) 460, 697
TspGWI ACGGA 1 cut(s) 701
TspRI CASTG 3 cut(s) 285, 445, 583
XapI RAATTY 3 cut(s) 161, 230, 539
XbaI TCTAGA 1 cut(s) 607
XspI CTAG 5 cut(s) 153, 243, 272, 507, 608
ZraI GACGTC 1 cut(s) 446
ZrmI AGTACT 2 cut(s) 55, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.