Rh5AG526500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000668
Physical Location & Seq
Reverse (-)
90284131 .. 90293743
9613 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG526500.1

Sequence Viewer

Length: 813 bp
ATGTTCTTAACATTGATGATCTCCCTGACTTTCTGTTGGTTGAAATCCTATGTTGGCTTCCTAGCAAGGAATTCGTTTTCCAATGCAAATGTGTTTCCAAGCATTGGCTCAATCTCATCTCAGATCGATCCGTATTTAATTGGCCGCTTTCTAGATCTTCAAAGATTTCATAAGCAAACCCCAATAGCACGTTCTCTTATAGAAAGAAGAGGGGAGGAATTTCCCACTCCTAGAACGACACAGTCGTCATCCAATCTGCTAGCCCCGCTGTTCAAAAGATTCATGAGTTTCCACAGTTTGGAAGAAAAGCCATATGTGGTAGGAACATCTAATGATTTAGTTTTATGCTGCCAAACTCCACATAACCAAGAGCAACGTGATTTCTACATTTGCAATCCATGCACAAGGCAATGGATTGCTCTTCCTCCCACCACCCGAAGTCACACGAATCCACCAGTTGGATTCATTTGTGATCGCTACTGTGAAGAGGAAGATAGTACTAGTGGTACCAATAGTACTGTTAATATTAAAAAGGACTACAGGTGCAAGGTTGGTGGTATAGAGGATCGGAGGAGGGTACCCACTGATCATTGCATTAGAGCTAGTAAACGTCCCTTTCTAACCATTCACAAAATTTCTCTCAAAGATAACTTTGTAAATAACAAAGTTGGCCAAATCACCTTAATGTGTCGCGCTCCTAACCTTACTCTGATTACTCACAGAACTGAGTTGCGAGGAGCGACGACTGCGACGGTGACGAGAGAATCGAAACTGCTAAACGGCGGAGGCGAACTTCTGGAGCTTCGCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

270

Amino Acids

30.76

Weight (kDa)

9.33

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 244
Acc65I GGTACC 2 cut(s) 506, 577
AccB1I GGYRCC 2 cut(s) 506, 577
AccB7I CCANNNNNTGG 3 cut(s) 104, 298, 458
AccII CGCG 1 cut(s) 693
AciI CCGC 3 cut(s) 145, 266, 783
AclWI GGATC 2 cut(s) 122, 573
AcoI YGGCCR 2 cut(s) 142, 670
AcsI RAATTY 3 cut(s) 70, 218, 633
AfaI GTAC 4 cut(s) 499, 508, 517, 579
AfiI CCNNNNNNNGG 3 cut(s) 104, 298, 458
AgsI TTSAA 3 cut(s) 43, 161, 274
AhlI ACTAGT 1 cut(s) 500
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 2 cut(s) 602, 802
AluI AGCT 2 cut(s) 602, 802
AlwI GGATC 2 cut(s) 122, 573
AoxI GGCC 2 cut(s) 142, 670
ApeKI GCWGC 1 cut(s) 348
ApoI RAATTY 3 cut(s) 70, 218, 633
Asp718I GGTACC 2 cut(s) 506, 577
AspLEI GCGC 1 cut(s) 695
AsuHPI GGTGA 2 cut(s) 670, 766
AsuNHI GCTAGC 1 cut(s) 259
BalI TGGCCA 1 cut(s) 672
BanI GGYRCC 2 cut(s) 506, 577
BbvI GCAGC 1 cut(s) 335
BceAI ACGGC 1 cut(s) 796
BcgI CGANNNNNNTGC 2 cut(s) 54, 88
BclI TGATCA 1 cut(s) 586
BcuI ACTAGT 1 cut(s) 500
BfaI CTAG 6 cut(s) 62, 152, 231, 260, 501, 603
BfmI CTRYAG 1 cut(s) 538
BglII AGATCT 1 cut(s) 154
BisI GCNGC 2 cut(s) 145, 349
BlsI GCNGC 2 cut(s) 146, 350
BmcAI AGTACT 2 cut(s) 499, 517
BmiI GGNNCC 2 cut(s) 508, 579
BmtI GCTAGC 1 cut(s) 263
Bsa29I ATCGAT 1 cut(s) 126
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 298, 458
Bse1I ACTGG 1 cut(s) 455
Bse3DI GCAATG 2 cut(s) 416, 589
BseCI ATCGAT 1 cut(s) 126
BseGI GGATG 1 cut(s) 248
BseLI CCNNNNNNNGG 3 cut(s) 104, 298, 458
BseMI GCAATG 2 cut(s) 416, 589
BseMII CTCAG 2 cut(s) 134, 717
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 2 cut(s) 586, 750
BseXI GCAGC 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 693
BshFI GGCC 2 cut(s) 144, 672
BshNI GGYRCC 2 cut(s) 506, 577
BshVI ATCGAT 1 cut(s) 126
BslFI GGGAC 1 cut(s) 597
BslI CCNNNNNNNGG 3 cut(s) 104, 298, 458
BsmFI GGGAC 1 cut(s) 597
BsnI GGCC 2 cut(s) 144, 672
Bsp143I GATC 7 cut(s) 18, 123, 127, 154, 472, 565, 586
BspACI CCGC 3 cut(s) 145, 266, 783
BspANI GGCC 2 cut(s) 144, 672
BspCNI CTCAG 2 cut(s) 133, 718
BspDI ATCGAT 1 cut(s) 126
BspFNI CGCG 1 cut(s) 693
BspHI TCATGA 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 508, 579
BspOI GCTAGC 1 cut(s) 263
BspPI GGATC 2 cut(s) 122, 573
BspQI GCTCTTC 1 cut(s) 426
BspT107I GGYRCC 2 cut(s) 506, 577
BsrDI GCAATG 2 cut(s) 416, 589
BsrI ACTGG 1 cut(s) 455
BssMI GATC 7 cut(s) 18, 123, 127, 154, 472, 565, 586
Bst4CI ACNGT 5 cut(s) 243, 296, 482, 520, 754
Bst6I CTCTTC 3 cut(s) 202, 426, 480
BstAPI GCANNNNNTGC 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 2 cut(s) 120, 726
BstF5I GGATG 1 cut(s) 248
BstFNI CGCG 1 cut(s) 693
BstHHI GCGC 1 cut(s) 695
BstKTI GATC 7 cut(s) 21, 126, 130, 157, 475, 568, 589
BstMBI GATC 7 cut(s) 18, 123, 127, 154, 472, 565, 586
BstMWI GCNNNNNNNGC 3 cut(s) 265, 399, 746
BstSFI CTRYAG 1 cut(s) 538
BstUI CGCG 1 cut(s) 693
BstV1I GCAGC 1 cut(s) 335
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 126
BsuRI GGCC 2 cut(s) 144, 672
BsuTUI ATCGAT 1 cut(s) 126
BtsCI GGATG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 582
Cac8I GCNNGC 1 cut(s) 261
CciI TCATGA 1 cut(s) 282
CfoI GCGC 1 cut(s) 695
ClaI ATCGAT 1 cut(s) 126
Csp6I GTAC 4 cut(s) 498, 507, 516, 578
CspCI CAANNNNNGTGG 2 cut(s) 535, 570
CviAII CATG 2 cut(s) 283, 399
CviJI RGCY 8 cut(s) 57, 108, 144, 263, 310, 602, 672, 802
CviKI_1 RGCY 8 cut(s) 57, 108, 144, 263, 310, 602, 672, 802
CviQI GTAC 4 cut(s) 498, 507, 516, 578
DdeI CTNAG 2 cut(s) 120, 726
DpnI GATC 7 cut(s) 20, 125, 129, 156, 474, 567, 588
DpnII GATC 7 cut(s) 18, 123, 127, 154, 472, 565, 586
DrdI GACNNNNNNGTC 1 cut(s) 244
DseDI GACNNNNNNGTC 1 cut(s) 244
EaeI YGGCCR 2 cut(s) 142, 670
Eam1104I CTCTTC 3 cut(s) 202, 426, 480
EarI CTCTTC 3 cut(s) 202, 426, 480
EciI GGCGGA 1 cut(s) 798
EcoRI GAATTC 1 cut(s) 70
FaeI CATG 2 cut(s) 286, 402
FaqI GGGAC 1 cut(s) 597
FatI CATG 2 cut(s) 282, 398
FauI CCCGC 1 cut(s) 273
FauNDI CATATG 1 cut(s) 313
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 2 cut(s) 145, 349
FokI GGATG 1 cut(s) 235
Fsp4HI GCNGC 2 cut(s) 145, 349
FspBI CTAG 6 cut(s) 62, 152, 231, 260, 501, 603
GlaI GCGC 1 cut(s) 694
GluI GCNGC 2 cut(s) 145, 349
HaeIII GGCC 2 cut(s) 144, 672
HhaI GCGC 1 cut(s) 695
Hin1II CATG 2 cut(s) 286, 402
Hin6I GCGC 1 cut(s) 693
HinP1I GCGC 1 cut(s) 693
HinfI GANTC 4 cut(s) 279, 448, 462, 764
HphI GGTGA 2 cut(s) 670, 766
Hpy166II GTNNAC 1 cut(s) 608
Hpy188I TCNGA 3 cut(s) 123, 570, 711
Hpy188III TCNNGA 3 cut(s) 152, 283, 797
Hpy8I GTNNAC 1 cut(s) 608
Hpy99I CGWCG 2 cut(s) 745, 754
HpyCH4III ACNGT 5 cut(s) 243, 296, 482, 520, 754
HpyCH4IV ACGT 3 cut(s) 190, 376, 610
HpyCH4V TGCA 5 cut(s) 86, 393, 402, 546, 594
HpyF10VI GCNNNNNNNGC 3 cut(s) 265, 399, 746
HpyF3I CTNAG 2 cut(s) 120, 726
HpySE526I ACGT 3 cut(s) 190, 376, 610
Hsp92II CATG 2 cut(s) 286, 402
HspAI GCGC 1 cut(s) 693
KpnI GGTACC 2 cut(s) 510, 581
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 7 cut(s) 18, 123, 127, 154, 472, 565, 586
LguI GCTCTTC 1 cut(s) 426
LmnI GCTCC 3 cut(s) 700, 737, 799
LpnPI CCDG 4 cut(s) 38, 468, 526, 782
Lsp1109I GCAGC 1 cut(s) 335
MaeI CTAG 6 cut(s) 62, 152, 231, 260, 501, 603
MaeII ACGT 3 cut(s) 190, 376, 610
MaeIII GTNAC 2 cut(s) 440, 754
MalI GATC 7 cut(s) 20, 125, 129, 156, 474, 567, 588
MboI GATC 7 cut(s) 18, 123, 127, 154, 472, 565, 586
MboII GAAGA 6 cut(s) 149, 219, 314, 413, 497, 503
MflI RGATCY 1 cut(s) 154
MlsI TGGCCA 1 cut(s) 672
MluCI AATT 4 cut(s) 70, 138, 218, 633
MluNI TGGCCA 1 cut(s) 672
MmeI TCCRAC 1 cut(s) 439
MnlI CCTC 9 cut(s) 203, 208, 435, 481, 556, 564, 567, 728, 779
Mox20I TGGCCA 1 cut(s) 672
MscI TGGCCA 1 cut(s) 672
MseI TTAA 5 cut(s) 8, 137, 522, 528, 683
MslI CAYNNNNRTG 1 cut(s) 683
Msp20I TGGCCA 1 cut(s) 672
MspA1I CMGCKG 1 cut(s) 268
MvnI CGCG 1 cut(s) 693
MwoI GCNNNNNNNGC 3 cut(s) 265, 399, 746
NdeI CATATG 1 cut(s) 313
NdeII GATC 7 cut(s) 18, 123, 127, 154, 472, 565, 586
NheI GCTAGC 1 cut(s) 259
NlaIII CATG 2 cut(s) 286, 402
NlaIV GGNNCC 2 cut(s) 508, 579
NmuCI GTSAC 2 cut(s) 440, 754
PagI TCATGA 1 cut(s) 282
PciSI GCTCTTC 1 cut(s) 426
PcsI WCGNNNNNNNCGW 3 cut(s) 242, 764, 786
PfeI GAWTC 4 cut(s) 279, 448, 462, 764
PflFI GACNNNGTC 1 cut(s) 241
PflMI CCANNNNNTGG 3 cut(s) 104, 298, 458
PkrI GCNGC 2 cut(s) 146, 350
PspN4I GGNNCC 2 cut(s) 508, 579
PsuI RGATCY 1 cut(s) 154
PsyI GACNNNGTC 1 cut(s) 241
RsaI GTAC 4 cut(s) 499, 508, 517, 579
RsaNI GTAC 4 cut(s) 498, 507, 516, 578
RseI CAYNNNNRTG 1 cut(s) 683
SapI GCTCTTC 1 cut(s) 426
SaqAI TTAA 5 cut(s) 8, 137, 522, 528, 683
SatI GCNGC 2 cut(s) 145, 349
Sau3AI GATC 7 cut(s) 18, 123, 127, 154, 472, 565, 586
ScaI AGTACT 2 cut(s) 499, 517
SetI ASST 9 cut(s) 193, 379, 545, 552, 604, 613, 683, 705, 804
SfcI CTRYAG 1 cut(s) 538
SmiMI CAYNNNNRTG 1 cut(s) 683
SpeI ACTAGT 1 cut(s) 500
Sse9I AATT 4 cut(s) 70, 138, 218, 633
SsiI CCGC 3 cut(s) 145, 266, 783
SspI AATATT 1 cut(s) 526
SspMI CTAG 6 cut(s) 62, 152, 231, 260, 501, 603
TaaI ACNGT 5 cut(s) 243, 296, 482, 520, 754
TaiI ACGT 3 cut(s) 193, 379, 613
TaqI TCGA 2 cut(s) 126, 767
TasI AATT 4 cut(s) 70, 138, 218, 633
TatI WGTACW 2 cut(s) 497, 515
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 4 cut(s) 279, 448, 462, 764
Tru1I TTAA 5 cut(s) 8, 137, 522, 528, 683
Tru9I TTAA 5 cut(s) 8, 137, 522, 528, 683
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 2 cut(s) 440, 754
TseI GCWGC 1 cut(s) 348
Tsp45I GTSAC 2 cut(s) 440, 754
TspDTI ATGAA 3 cut(s) 158, 271, 454
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 1 cut(s) 589
Tth111I GACNNNGTC 1 cut(s) 241
Van91I CCANNNNNTGG 3 cut(s) 104, 298, 458
XapI RAATTY 3 cut(s) 70, 218, 633
XbaI TCTAGA 1 cut(s) 151
XspI CTAG 6 cut(s) 62, 152, 231, 260, 501, 603
ZrmI AGTACT 2 cut(s) 499, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.