Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000668

Physical Location & Seq

Genomic Coordinates Reverse (-)

12816287 .. 12817946

Gene Structure 1660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1094900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAAGAGTAAAAAGGGAAGCAAGGCACGTGCAAAAGACATGGTTAAAGATAATGGCATGGTTGACATTGAACCAGAAGATTTGCCAATCAAGTCTAAAAAGGGCAGTAATAAGCGTGCTACAGCACCGGATTCGAATCCTCCAACTGTCAAAGACATCCTTGAAATTGGTCATGTGGAGGATGCAGATGGAGTTCTTGTTGATGATGACTTGAATGAACCAACCATGGGAGAAAAACTTGGAAGTTTAAATTTATTAGACAATGCTAGACCAGAGAGCCATGATAAAGAAGAATCTTCTCTCGATCCAAAGCCTCTAAGTGCAGACTCAATTCATGTTTTACTCAAGAAAGCACTACATGCCAATGACTGTGCCCTTTTATTAGATTGCTTATACACCCAAGATGAGAAGGTTGTAGCTCTCGTAGTTCATATTGGTTATATAATACTTATGCATGAAGATAAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12

Protein Analysis

157

Amino Acids

17.06

Weight (kDa)

5.09

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15420 AT1G15420
fragaria_vesca	FvH4_3g30171 FvH4_3g44471 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44510 FvH4_7g12841
malus_domestica	MD12G1094900.v1.1 MD14G1090800.v1.1 MD15G1387900.v1.1 MD15G1388000.v1.1
prunus_persica	Prupe.6G012700_v2.0.a1
pyrus_communis	pycom15g34820
rosa_chinensis	RchiOBHm_Chr1g0331681 RchiOBHm_Chr5g0081171 RchiOBHm_Chr5g0081181 RchiOBHm_Chr5g0081211
rosa_laevigata	RLG00000030438 RLG00000030441 RLG00000030443 RLG00000030447 RLG00000036915 RLG00000036917 RLG00000036919
rosa_multiflora	Rmu_sc0005044.1_g000010 Rmu_sc0005044.1_g000012 Rmu_sc0007768.1_g000001 Rmu_sc0020106.1_g000001 Rmu_ssc0000432.1_g000071 Rmu_ssc0000432.1_g000072 Rmu_ssc0000432.1_g000074 Rmu_ssc0000432.1_g000076 Rmu_ssc0000432.1_g000077
rosa_roxburghii	Rroxscaffold_1G00002290 Rroxscaffold_4G00323980
rosa_rugosa	Rorug01G0031400 Rorug01G0031500 Rorug05G0473700 Rorug05G0473800 Rorug05G0473900 Rorug05G0474000 Rorug05G0474100 Rorug05G0474200 Rorug05G0474400 Rorug05G0474700
rosa_samantha	Rh1AG119200 Rh1BG040400 Rh1CG045400 Rh1CG114200 Rh1CG114300 Rh1CG221300 Rh1DG050000 Rh1DG124400 Rh1DG124600 Rh5AG526300 Rh5AG526500 Rh5BG550600 Rh5CG573500 Rh5DG560300 Rh5DG560700
rosa_wichuraiana	Rw1G009620 Rw1G009630 Rw5G048900 Rw5G048910 Rw5G048940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	250
AcvI	CACGTG	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	3 cut(s)	71, 164, 214
AluBI	AGCT	1 cut(s)	419
AluI	AGCT	1 cut(s)	419
AlwI	GGATC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	250
AsuII	TTCGAA	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	376
BbrPI	CACGTG	1 cut(s)	29
BccI	CCATC	1 cut(s)	182
BcgI	CGANNNNNNTGC	2 cut(s)	114, 148
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	172
Bpu14I	TTCGAA	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse8I	GATNNNNATC	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	156, 187
BseJI	GATNNNNATC	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseSI	GKGCMC	1 cut(s)	376
BsgI	GTGCAG	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	227
Bsp119I	TTCGAA	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	304
Bsp19I	CCATGG	1 cut(s)	225
BspPI	GGATC	1 cut(s)	299
BspT104I	TTCGAA	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	148, 371
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstBAI	YACGTR	1 cut(s)	29
BstBI	TTCGAA	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	317
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	156, 187
BstKTI	GATC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNSI	RCATGY	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	156, 187
Cac8I	GCNNGC	1 cut(s)	117
CviAII	CATG	8 cut(s)	40, 58, 173, 226, 281, 335, 359, 455
CviJI	RGCY	3 cut(s)	279, 313, 419
CviKI_1	RGCY	3 cut(s)	279, 313, 419
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
DraI	TTTAAA	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	225
Eco72I	CACGTG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	225
EcoT22I	ATGCAT	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	8 cut(s)	43, 61, 176, 229, 284, 338, 362, 458
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FatI	CATG	8 cut(s)	39, 57, 172, 225, 280, 334, 358, 454
FokI	GGATG	2 cut(s)	143, 194
FspBI	CTAG	1 cut(s)	267
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	8 cut(s)	43, 61, 176, 229, 284, 338, 362, 458
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	4 cut(s)	131, 136, 293, 326
HpaII	CCGG	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	302, 346
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	2 cut(s)	148, 371
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	4 cut(s)	32, 185, 323, 454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	8 cut(s)	43, 61, 176, 229, 284, 338, 362, 458
Kzo9I	GATC	1 cut(s)	304
LpnPI	CCDG	3 cut(s)	87, 141, 285
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	28
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	5 cut(s)	16, 89, 288, 302, 470
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	3 cut(s)	165, 250, 330
MlyI	GAGTC	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	3 cut(s)	150, 172, 324
Mph1103I	ATGCAT	1 cut(s)	456
MseI	TTAA	3 cut(s)	45, 248, 469
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	359
NcoI	CCATGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	8 cut(s)	43, 61, 176, 229, 284, 338, 362, 458
NsiI	ATGCAT	1 cut(s)	456
NspI	RCATGY	1 cut(s)	362
NspV	TTCGAA	1 cut(s)	134
PfeI	GAWTC	3 cut(s)	131, 136, 293
PleI	GAGTC	1 cut(s)	320
PmaCI	CACGTG	1 cut(s)	29
PmlI	CACGTG	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	320
Ppu21I	YACGTR	1 cut(s)	29
PspCI	CACGTG	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	363
SaqAI	TTAA	3 cut(s)	45, 248, 469
Sau3AI	GATC	1 cut(s)	304
SchI	GAGTC	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	3 cut(s)	31, 414, 421
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	1 cut(s)	120
SfuI	TTCGAA	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	3 cut(s)	165, 250, 330
SspMI	CTAG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	148, 371
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	134, 303
TasI	AATT	3 cut(s)	165, 250, 330
TfiI	GAWTC	3 cut(s)	131, 136, 293
Tru1I	TTAA	3 cut(s)	45, 248, 469
Tru9I	TTAA	3 cut(s)	45, 248, 469
TspDTI	ATGAA	5 cut(s)	17, 231, 323, 419, 471
XapI	RAATTY	1 cut(s)	250
XceI	RCATGY	1 cut(s)	362
XspI	CTAG	1 cut(s)	267
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.