Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000432.1

Orthogroup ID

OG0000668

Physical Location & Seq

Genomic Coordinates Reverse (-)

269673 .. 270245

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000432.1_g000077.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

atgagccggttggccagatcgggcttattgggttggatccttttgtggttggcaatagcagatccttttgtgatcggcaatagcagtgctagccctaacggtgatgagactgttgacgatgatcattaccaatttcgtctctttgatgcagtttgttgtggttttggtttcgacatgccatggatatgtatgcgccgagggcgtctgcaaatgtggggctacaattaccggaacgctgatttgacggtttgggagtcaacaggtgatgatgatcttggatcagctgacgagttctatttgaaaaatgtgtgtgtttttccagtaaccacctgtgaagtttctgaaagtaatgttgttgttctagccttggacccgaatgatgaggatatcttttatgcagaagtgtatgatggcagtttcctaaactatttcctgtacaacatttgtacaagaaagtggtcaaaagtagctatcaccaagcatgttgaagacgatcatctctttcgattggtgctcccatggtggccaacaccacttcgtagactacctgtggttgaagaattacccatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

190

Amino Acids

21.91

Weight (kDa)

4.46

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15420 AT1G15420
fragaria_vesca	FvH4_3g30171 FvH4_3g44471 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44510 FvH4_7g12841
malus_domestica	MD12G1094900.v1.1 MD14G1090800.v1.1 MD15G1387900.v1.1 MD15G1388000.v1.1
prunus_persica	Prupe.6G012700_v2.0.a1
pyrus_communis	pycom15g34820
rosa_chinensis	RchiOBHm_Chr1g0331681 RchiOBHm_Chr5g0081171 RchiOBHm_Chr5g0081181 RchiOBHm_Chr5g0081211
rosa_laevigata	RLG00000030438 RLG00000030441 RLG00000030443 RLG00000030447 RLG00000036915 RLG00000036917 RLG00000036919
rosa_multiflora	Rmu_sc0005044.1_g000010 Rmu_sc0005044.1_g000012 Rmu_sc0007768.1_g000001 Rmu_sc0020106.1_g000001 Rmu_ssc0000432.1_g000071 Rmu_ssc0000432.1_g000072 Rmu_ssc0000432.1_g000074 Rmu_ssc0000432.1_g000076 Rmu_ssc0000432.1_g000077
rosa_roxburghii	Rroxscaffold_1G00002290 Rroxscaffold_4G00323980
rosa_rugosa	Rorug01G0031400 Rorug01G0031500 Rorug05G0473700 Rorug05G0473800 Rorug05G0473900 Rorug05G0474000 Rorug05G0474100 Rorug05G0474200 Rorug05G0474400 Rorug05G0474700
rosa_samantha	Rh1AG119200 Rh1BG040400 Rh1CG045400 Rh1CG114200 Rh1CG114300 Rh1CG221300 Rh1DG050000 Rh1DG124400 Rh1DG124600 Rh5AG526300 Rh5AG526500 Rh5BG550600 Rh5CG573500 Rh5DG560300 Rh5DG560700
rosa_wichuraiana	Rw1G009620 Rw1G009630 Rw5G048900 Rw5G048910 Rw5G048940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	541
AclWI	GGATC	4 cut(s)	31, 44, 56, 286
AcoI	YGGCCR	2 cut(s)	12, 524
AcyI	GRCGYC	1 cut(s)	202
AfaI	GTAC	2 cut(s)	437, 448
AgsI	TTSAA	3 cut(s)	301, 488, 557
AluBI	AGCT	2 cut(s)	284, 470
AluI	AGCT	2 cut(s)	284, 470
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	2 cut(s)	101, 143
AlwI	GGATC	4 cut(s)	31, 44, 56, 286
AoxI	GGCC	2 cut(s)	12, 524
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	370
AsuHPI	GGTGA	3 cut(s)	113, 275, 466
AsuNHI	GCTAGC	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	370
BalI	TGGCCA	2 cut(s)	14, 526
BamHI	GGATCC	1 cut(s)	36
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	516
BccI	CCATC	1 cut(s)	404
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	101, 143
BfaI	CTAG	2 cut(s)	90, 362
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	2 cut(s)	38, 372
BmsI	GCATC	1 cut(s)	136
BmtI	GCTAGC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	495
BsaBI	GATNNNNATC	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	202
BsaJI	CCNNGG	4 cut(s)	179, 196, 366, 518
BsaWI	WCCGGW	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	320
Bse8I	GATNNNNATC	1 cut(s)	270
BseDI	CCNNGG	4 cut(s)	179, 196, 366, 518
BseJI	GATNNNNATC	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	320
BshFI	GGCC	2 cut(s)	14, 526
BsiHKAI	GWGCWC	1 cut(s)	516
BsiSI	CCGG	2 cut(s)	7, 229
BsmAI	GTCTC	2 cut(s)	101, 143
BsmBI	CGTCTC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	14, 526
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp1407I	TGTACA	2 cut(s)	435, 446
Bsp143I	GATC	8 cut(s)	17, 36, 61, 72, 121, 271, 278, 493
Bsp19I	CCATGG	2 cut(s)	179, 518
BspANI	GGCC	2 cut(s)	14, 526
BspLI	GGNNCC	2 cut(s)	38, 372
BspOI	GCTAGC	1 cut(s)	93
BspPI	GGATC	4 cut(s)	31, 44, 56, 286
BsrFI	RCCGGY	1 cut(s)	6
BsrGI	TGTACA	2 cut(s)	435, 446
BsrI	ACTGG	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	6
BssECI	CCNNGG	4 cut(s)	179, 196, 366, 518
BssMI	GATC	8 cut(s)	17, 36, 61, 72, 121, 271, 278, 493
BssNI	GRCGYC	1 cut(s)	202
BssT1I	CCWWGG	3 cut(s)	179, 366, 518
Bst4CI	ACNGT	3 cut(s)	101, 112, 247
BstACI	GRCGYC	1 cut(s)	202
BstAUI	TGTACA	2 cut(s)	435, 446
BstC8I	GCNNGC	1 cut(s)	91
BstDSI	CCRYGG	2 cut(s)	179, 518
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	8 cut(s)	20, 39, 64, 75, 124, 274, 281, 496
BstMAI	GTCTC	2 cut(s)	101, 143
BstMBI	GATC	8 cut(s)	17, 36, 61, 72, 121, 271, 278, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 199
BstNSI	RCATGY	2 cut(s)	178, 485
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	2 cut(s)	36, 61
BstYI	RGATCY	2 cut(s)	36, 61
BsuRI	GGCC	2 cut(s)	14, 526
BtgI	CCRYGG	2 cut(s)	179, 518
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	91
CfoI	GCGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	370
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	2 cut(s)	436, 447
CviAII	CATG	4 cut(s)	175, 180, 482, 519
CviJI	RGCY	9 cut(s)	6, 14, 24, 93, 219, 284, 365, 470, 526
CviKI_1	RGCY	9 cut(s)	6, 14, 24, 93, 219, 284, 365, 470, 526
CviQI	GTAC	2 cut(s)	436, 447
DpnI	GATC	8 cut(s)	19, 38, 63, 74, 123, 273, 280, 495
DpnII	GATC	8 cut(s)	17, 36, 61, 72, 121, 271, 278, 493
EaeI	YGGCCR	2 cut(s)	12, 524
Eco130I	CCWWGG	3 cut(s)	179, 366, 518
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	370
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	3 cut(s)	179, 366, 518
ErhI	CCWWGG	3 cut(s)	179, 366, 518
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	4 cut(s)	178, 183, 485, 522
FatI	CATG	4 cut(s)	174, 179, 481, 518
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	541
FspBI	CTAG	2 cut(s)	90, 362
GlaI	GCGC	1 cut(s)	194
HaeIII	GGCC	2 cut(s)	14, 526
HapII	CCGG	2 cut(s)	7, 229
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	195
Hin1I	GRCGYC	1 cut(s)	202
Hin1II	CATG	4 cut(s)	178, 183, 485, 522
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HincII	GTYRAC	2 cut(s)	115, 258
HindII	GTYRAC	2 cut(s)	115, 258
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	2 cut(s)	7, 229
HphI	GGTGA	3 cut(s)	113, 275, 466
Hpy166II	GTNNAC	3 cut(s)	115, 258, 542
Hpy188I	TCNGA	1 cut(s)	343
Hpy8I	GTNNAC	3 cut(s)	115, 258, 542
HpyCH4III	ACNGT	3 cut(s)	101, 112, 247
HpyCH4V	TGCA	3 cut(s)	149, 208, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 199
Hsp92I	GRCGYC	1 cut(s)	202
Hsp92II	CATG	4 cut(s)	178, 183, 485, 522
HspAI	GCGC	1 cut(s)	193
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	8 cut(s)	17, 36, 61, 72, 121, 271, 278, 493
LmnI	GCTCC	1 cut(s)	519
LpnPI	CCDG	8 cut(s)	20, 28, 242, 246, 333, 343, 446, 561
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	2 cut(s)	90, 362
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	8 cut(s)	19, 38, 63, 74, 123, 273, 280, 495
MboI	GATC	8 cut(s)	17, 36, 61, 72, 121, 271, 278, 493
MboII	GAAGA	2 cut(s)	500, 569
MflI	RGATCY	2 cut(s)	36, 61
MhlI	GDGCHC	1 cut(s)	516
MlsI	TGGCCA	2 cut(s)	14, 526
MluCI	AATT	3 cut(s)	131, 223, 560
MluNI	TGGCCA	2 cut(s)	14, 526
MlyI	GAGTC	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	14
MnlI	CCTC	2 cut(s)	191, 376
Mox20I	TGGCCA	2 cut(s)	14, 526
MscI	TGGCCA	2 cut(s)	14, 526
MslI	CAYNNNNRTG	1 cut(s)	184
Msp20I	TGGCCA	2 cut(s)	14, 526
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	2 cut(s)	7, 229
MwoI	GCNNNNNNNGC	2 cut(s)	90, 199
NcoI	CCATGG	2 cut(s)	179, 518
NdeII	GATC	8 cut(s)	17, 36, 61, 72, 121, 271, 278, 493
NheI	GCTAGC	1 cut(s)	89
NlaIII	CATG	4 cut(s)	178, 183, 485, 522
NlaIV	GGNNCC	2 cut(s)	38, 372
NmeAIII	GCCGAG	1 cut(s)	221
NspI	RCATGY	2 cut(s)	178, 485
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	38, 372
PspPI	GGNCC	1 cut(s)	370
PsuI	RGATCY	2 cut(s)	36, 61
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	2 cut(s)	437, 448
RsaNI	GTAC	2 cut(s)	436, 447
RseI	CAYNNNNRTG	1 cut(s)	184
Sau3AI	GATC	8 cut(s)	17, 36, 61, 72, 121, 271, 278, 493
Sau96I	GGNCC	1 cut(s)	370
SchI	GAGTC	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	516
SetI	ASST	5 cut(s)	265, 286, 332, 472, 550
SfaNI	GCATC	1 cut(s)	136
SinI	GGWCC	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	184
Sse9I	AATT	3 cut(s)	131, 223, 560
SspMI	CTAG	2 cut(s)	90, 362
StyI	CCWWGG	3 cut(s)	179, 366, 518
TaaI	ACNGT	3 cut(s)	101, 112, 247
TaqI	TCGA	2 cut(s)	171, 505
TasI	AATT	3 cut(s)	131, 223, 560
TatI	WGTACW	2 cut(s)	435, 446
TscAI	CASTG	1 cut(s)	91
TspRI	CASTG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	370
XceI	RCATGY	2 cut(s)	178, 485
XmiI	GTMKAC	1 cut(s)	541
XspI	CTAG	2 cut(s)	90, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.