Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000668

Physical Location & Seq

Genomic Coordinates Reverse (-)

12922283 .. 12923393

Gene Structure 1111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1090800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGTTCGTGAACAAAACACAAATATTGAGCATTTGTATGTCGATACATTTACCTTAATTCATCTAGGTCATGGGGAGGCTTCAGATGGAGTTCTGGTTGACGATGATTTGAATGAACCAACTATGGGAGAAAAACATGAAAGTTTAGAATTATTAGACAATGAAAGACCGGAGAGCCATGATAAAGAGGAATCTTCTCTCGATCCAAAGCCTCCAAGTGCAGACTCAGTTCATATTTTACTCAAGCAAGCTCTACATGCCGATGACCGTGCCCTTTTATTAGATTGCATATACACCCAAGATGAGAAGGTCATTGCAAAGTGTGCAATTTTGGCAGGTGCGCTTCCATGGCTTAGAAGTTTACTTCTTCAACACGCAAGTGGTATAGTGTCCCAAGAATCTTCTTTGCGTGCCTTGAACTCCATATATCAGGTTATTGACGATGTTGATGAGAATGTGACAATAACTCCCCTTATTTACGAGTCCGATACAAGCGACGAAGCCGATGAAGAGGAAGAGGAACCCGATGGCGCCCTTGATGGTGTTAGTGATTTTGATGGAATTGAGGACACGAGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Utp12

Protein Analysis

194

Amino Acids

21.33

Weight (kDa)

4.1

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15420 AT1G15420
fragaria_vesca	FvH4_3g30171 FvH4_3g44471 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44480 FvH4_3g44510 FvH4_7g12841
malus_domestica	MD12G1094900.v1.1 MD14G1090800.v1.1 MD15G1387900.v1.1 MD15G1388000.v1.1
prunus_persica	Prupe.6G012700_v2.0.a1
pyrus_communis	pycom15g34820
rosa_chinensis	RchiOBHm_Chr1g0331681 RchiOBHm_Chr5g0081171 RchiOBHm_Chr5g0081181 RchiOBHm_Chr5g0081211
rosa_laevigata	RLG00000030438 RLG00000030441 RLG00000030443 RLG00000030447 RLG00000036915 RLG00000036917 RLG00000036919
rosa_multiflora	Rmu_sc0005044.1_g000010 Rmu_sc0005044.1_g000012 Rmu_sc0007768.1_g000001 Rmu_sc0020106.1_g000001 Rmu_ssc0000432.1_g000071 Rmu_ssc0000432.1_g000072 Rmu_ssc0000432.1_g000074 Rmu_ssc0000432.1_g000076 Rmu_ssc0000432.1_g000077
rosa_roxburghii	Rroxscaffold_1G00002290 Rroxscaffold_4G00323980
rosa_rugosa	Rorug01G0031400 Rorug01G0031500 Rorug05G0473700 Rorug05G0473800 Rorug05G0473900 Rorug05G0474000 Rorug05G0474100 Rorug05G0474200 Rorug05G0474400 Rorug05G0474700
rosa_samantha	Rh1AG119200 Rh1BG040400 Rh1CG045400 Rh1CG114200 Rh1CG114300 Rh1CG221300 Rh1DG050000 Rh1DG124400 Rh1DG124600 Rh5AG526300 Rh5AG526500 Rh5BG550600 Rh5CG573500 Rh5DG560300 Rh5DG560700
rosa_wichuraiana	Rw1G009620 Rw1G009630 Rw5G048900 Rw5G048910 Rw5G048940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	326
Acc36I	ACCTGC	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	530
AclWI	GGATC	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	531
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	112, 371, 418
AleI	CACNNNNGTG	1 cut(s)	378
AluBI	AGCT	1 cut(s)	251
AluI	AGCT	1 cut(s)	251
AlwI	GGATC	1 cut(s)	197
AspLEI	GCGC	2 cut(s)	343, 533
BaeGI	GKGCMC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	530
BauI	CACGAG	1 cut(s)	571
BccI	CCATC	4 cut(s)	80, 521, 533, 551
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BfaI	CTAG	1 cut(s)	65
BfoI	RGCGCY	1 cut(s)	534
BfuAI	ACCTGC	1 cut(s)	326
BmiI	GGNNCC	2 cut(s)	522, 532
BpuEI	CTTGAG	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	531
BsaJI	CCNNGG	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 451, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	240
BseSI	GKGCMC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	240
BshNI	GGYRCC	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	202
Bsp19I	CCATGG	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	239
BspLI	GGNNCC	2 cut(s)	522, 532
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	530
BsrDI	GCAATG	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	1 cut(s)	202
BssNI	GRCGYC	1 cut(s)	531
BssSI	CACGAG	1 cut(s)	571
BssT1I	CCWWGG	1 cut(s)	347
Bst2BI	CACGAG	1 cut(s)	571
Bst4CI	ACNGT	1 cut(s)	269
Bst6I	CTCTTC	2 cut(s)	504, 510
BstACI	GRCGYC	1 cut(s)	531
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	249, 411
BstDEI	CTNAG	2 cut(s)	226, 353
BstDSI	CCRYGG	1 cut(s)	347
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	2 cut(s)	343, 533
BstKTI	GATC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	4 cut(s)	257, 323, 332, 349
BstNSI	RCATGY	1 cut(s)	260
BstSLI	GKGCMC	1 cut(s)	274
BtgI	CCRYGG	1 cut(s)	347
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	2 cut(s)	249, 411
CfoI	GCGC	2 cut(s)	343, 533
CviAII	CATG	5 cut(s)	71, 137, 179, 257, 348
CviJI	RGCY	6 cut(s)	80, 177, 211, 251, 352, 503
CviKI_1	RGCY	6 cut(s)	80, 177, 211, 251, 352, 503
DdeI	CTNAG	2 cut(s)	226, 353
DinI	GGCGCC	1 cut(s)	532
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	504, 510
EarI	CTCTTC	2 cut(s)	504, 510
Eco130I	CCWWGG	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	347
EgeI	GGCGCC	1 cut(s)	532
EheI	GGCGCC	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	5 cut(s)	74, 140, 182, 260, 351
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	5 cut(s)	70, 136, 178, 256, 347
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	2 cut(s)	342, 532
HaeII	RGCGCY	1 cut(s)	534
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	2 cut(s)	343, 533
Hin1I	GRCGYC	1 cut(s)	531
Hin1II	CATG	5 cut(s)	74, 140, 182, 260, 351
Hin6I	GCGC	2 cut(s)	341, 531
HinP1I	GCGC	2 cut(s)	341, 531
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	4 cut(s)	191, 224, 398, 482
HpaII	CCGG	1 cut(s)	170
Hpy166II	GTNNAC	3 cut(s)	11, 100, 362
Hpy188I	TCNGA	2 cut(s)	85, 487
Hpy188III	TCNNGA	2 cut(s)	8, 200
Hpy8I	GTNNAC	3 cut(s)	11, 100, 362
Hpy99I	CGWCG	1 cut(s)	500
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4V	TGCA	4 cut(s)	221, 288, 317, 326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	257, 323, 332, 349
HpyF3I	CTNAG	2 cut(s)	226, 353
Hsp92I	GRCGYC	1 cut(s)	531
Hsp92II	CATG	5 cut(s)	74, 140, 182, 260, 351
HspAI	GCGC	2 cut(s)	341, 531
KasI	GGCGCC	1 cut(s)	530
Kzo9I	GATC	1 cut(s)	202
LpnPI	CCDG	4 cut(s)	80, 183, 321, 416
MaeI	CTAG	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	5 cut(s)	186, 359, 393, 521, 527
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	4 cut(s)	57, 149, 327, 561
Mly113I	GGCGCC	1 cut(s)	531
MlyI	GAGTC	2 cut(s)	218, 491
MnlI	CCTC	6 cut(s)	70, 181, 222, 505, 511, 559
MseI	TTAA	1 cut(s)	56
MslI	CAYNNNNRTG	3 cut(s)	36, 261, 378
MspI	CCGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	4 cut(s)	257, 323, 332, 349
NarI	GGCGCC	1 cut(s)	531
NcoI	CCATGG	1 cut(s)	347
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	5 cut(s)	74, 140, 182, 260, 351
NlaIV	GGNNCC	2 cut(s)	522, 532
NmuCI	GTSAC	1 cut(s)	457
NspI	RCATGY	1 cut(s)	260
OliI	CACNNNNGTG	1 cut(s)	378
PaqCI	CACCTGC	1 cut(s)	326
PfeI	GAWTC	2 cut(s)	191, 398
PleI	GAGTC	2 cut(s)	218, 490
PluTI	GGCGCC	1 cut(s)	534
PpsI	GAGTC	2 cut(s)	218, 490
PspN4I	GGNNCC	2 cut(s)	522, 532
RseI	CAYNNNNRTG	3 cut(s)	36, 261, 378
SaqAI	TTAA	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	202
SchI	GAGTC	2 cut(s)	218, 491
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	6 cut(s)	56, 70, 253, 312, 340, 435
SfoI	GGCGCC	1 cut(s)	532
SmiMI	CAYNNNNRTG	3 cut(s)	36, 261, 378
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	4 cut(s)	57, 149, 327, 561
SspDI	GGCGCC	1 cut(s)	530
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	269
TaqI	TCGA	2 cut(s)	42, 201
TasI	AATT	4 cut(s)	57, 149, 327, 561
TfiI	GAWTC	2 cut(s)	191, 398
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TseFI	GTSAC	1 cut(s)	457
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	6 cut(s)	50, 129, 153, 177, 221, 522
XceI	RCATGY	1 cut(s)	260
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.