FvH4_3g44510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000668
Physical Location & Seq
Reverse (-)
37096731 .. 37098596
1866 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g44510.t1

Sequence Viewer

Length: 1296 bp
ATGAGTTTTAGCTATGATGATCTCCCAGACCTTCTGTTGGTTGAAATCCTATGTCGGCTTCCTCGCAAGGAATTCGTTTTCCAATGCAAATGTGTTTCCAAGCATTGGCTCAATCTCATCTCGGATCCGTATTTCATTGGCCGATTTCTACATATTCAAAGATTTCAGAAGAAAACCCCAATAGCAAGAACTCTGATGGACAGAAGAGGAGAGGAATTCCCCACTCCTAGAACGGCACAGTCGTCATCCAATCTGCTAGATCCGCTATTCGAAAGAGTCATGAGTTTCCACGGATTGGAAGAAAAGCCATATGTGGTAGGAACATCTAATGATTTAGTTTTGTGCTGCCGAACTCCATATTACATAAACCAACGTGAATTCTACATTTGCAATCCATGCACAAGACAATGGATTGCTCTTCCTCCCACCGCTCGATGTTGCACGCATGCAGCAGTTGGATTCATTTCTGATCCCTACTATGAGGAAGATAGTACTACTAGTGGTACCGCTGTTAATATTAATTCGGACTACAGGTGCAAGGTTGTGAGAATTCTTCCTCACTATTCAGCTACAATGTCTCTTTGGGTGGTTGAACATTGCAAATTCATTGTTCAGGTATTCTGTTTGGAGACGGGCCAATGGAGAGAGTCGATTGCATCTTCCCCACGAAACATTGAGTTTGCAGATATTACTGGCGTTGCTTACAATGGAATGTTGTATTGGACTTATAAAGCATCTGAGCCTCGTGGGGAGACCGGGATTATTAGGCTGGATCCATTTATGATCGGAAATGGCAGTGCTGCTAGTGGTAGCCCTAATGGTGTTGAGATTGTTGATGATGATCAGTTTCAGTTTCAGTTTCAACTATTTGATGCAGTTAATGATAATAATCTTTTAGACAATCCGTTTATATATGTGCGTCGAGGGCGTCTACAAATGTGGGCGCGTAGCTGGCCTTATGAAAATGATGTTTGGGAGTTAACTGGATCACCTGACAAATTATATATGAAACAAGTGAGTGTTTATTTTGTAGACAGTGAAGTACTACTTGATGGTTATAATCGTGGAGCTTATCTTCTAGCTTTGGACCCGAATGATGAGGATATCTTTCATGTACAAAGCTACGGAAAAACAAGATGCTATTTCATGTACAACATTCGTACAGAAAGCTGGTCTAAAGTAGATAGCACCAGGTATTTTGAATATTGGACGGACGGCGATCTCTACCAGTTGGTGCTCCCATGGTGGCCAACACCACTTCGTAGACTACCACTGGTTGAAGAATTATCCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

432

Amino Acids

50.24

Weight (kDa)

5.25

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 45 2.1e-08 F-box domain
b-prop_At3g26010-like PF24750 102 - 258 2.9e-09 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 729, 1059
Acc65I GGTACC 1 cut(s) 503
AccB1I GGYRCC 1 cut(s) 503
AccB7I CCANNNNNTGG 2 cut(s) 105, 295
AccBSI CCGCTC 1 cut(s) 431
AccI GTMKAC 3 cut(s) 931, 1032, 1264
AccII CGCG 1 cut(s) 946
AciI CCGC 3 cut(s) 263, 429, 507
AclWI GGATC 7 cut(s) 119, 132, 254, 464, 767, 780, 994
AcoI YGGCCR 2 cut(s) 139, 1247
AcsI RAATTY 5 cut(s) 71, 215, 377, 549, 602
AcyI GRCGYC 1 cut(s) 928
AfaI GTAC 6 cut(s) 493, 505, 1044, 1116, 1151, 1162
AfiI CCNNNNNNNGG 3 cut(s) 37, 105, 295
AgsI TTSAA 6 cut(s) 44, 158, 593, 863, 1202, 1280
AhlI ACTAGT 1 cut(s) 497
AjnI CCWGG 1 cut(s) 1190
AjuI GAANNNNNNNTTGG 2 cut(s) 703, 735
AluBI AGCT 7 cut(s) 12, 569, 951, 1070, 1082, 1122, 1170
AluI AGCT 7 cut(s) 12, 569, 951, 1070, 1082, 1122, 1170
Alw21I GWGCWC 1 cut(s) 1239
Alw26I GTCTC 3 cut(s) 582, 623, 746
AlwI GGATC 7 cut(s) 119, 132, 254, 464, 767, 780, 994
AoxI GGCC 4 cut(s) 139, 634, 953, 1247
ApeKI GCWGC 3 cut(s) 345, 449, 800
ApoI RAATTY 5 cut(s) 71, 215, 377, 549, 602
AseI ATTAAT 1 cut(s) 519
Asp718I GGTACC 1 cut(s) 503
AspLEI GCGC 1 cut(s) 946
AspS9I GGNCC 2 cut(s) 634, 1087
AsuC2I CCSGG 1 cut(s) 757
AsuHPI GGTGA 1 cut(s) 981
AsuII TTCGAA 1 cut(s) 270
AvaII GGWCC 1 cut(s) 1087
BaeI ACNNNNGTAYC 2 cut(s) 495, 528
BalI TGGCCA 1 cut(s) 1249
BamHI GGATCC 2 cut(s) 124, 772
BanI GGYRCC 1 cut(s) 503
BauI CACGAG 1 cut(s) 744
Bbv12I GWGCWC 1 cut(s) 1239
BbvI GCAGC 3 cut(s) 332, 461, 787
BccI CCATC 2 cut(s) 190, 1046
BceAI ACGGC 2 cut(s) 249, 1231
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciT130I CCWGG 1 cut(s) 1192
BclI TGATCA 1 cut(s) 841
BcnI CCSGG 1 cut(s) 757
BcoDI GTCTC 3 cut(s) 582, 623, 746
BcuI ACTAGT 1 cut(s) 497
BfaI CTAG 5 cut(s) 228, 257, 498, 804, 1079
BfmI CTRYAG 1 cut(s) 529
BisI GCNGC 3 cut(s) 346, 450, 801
BlsI GCNGC 3 cut(s) 347, 451, 802
BmcAI AGTACT 2 cut(s) 493, 1044
Bme1390I CCNGG 2 cut(s) 757, 1192
Bme18I GGWCC 1 cut(s) 1087
BmgT120I GGNCC 2 cut(s) 634, 1087
BmiI GGNNCC 4 cut(s) 126, 505, 774, 1089
BmrFI CCNGG 2 cut(s) 757, 1192
BmsI GCATC 4 cut(s) 665, 743, 862, 1127
Bpu14I TTCGAA 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 757
BsaBI GATNNNNATC 2 cut(s) 840, 888
BsaHI GRCGYC 1 cut(s) 928
BsaI GGTCTC 1 cut(s) 746
BsaJI CCNNGG 2 cut(s) 289, 1241
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 105, 295
Bse1I ACTGG 4 cut(s) 697, 988, 1228, 1278
Bse3DI GCAATG 1 cut(s) 595
Bse8I GATNNNNATC 2 cut(s) 840, 888
BseBI CCWGG 1 cut(s) 1192
BseDI CCNNGG 2 cut(s) 289, 1241
BseGI GGATG 1 cut(s) 245
BseJI GATNNNNATC 2 cut(s) 840, 888
BseLI CCNNNNNNNGG 3 cut(s) 37, 105, 295
BseMI GCAATG 1 cut(s) 595
BseMII CTCAG 1 cut(s) 729
BseNI ACTGG 4 cut(s) 697, 988, 1228, 1278
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 3 cut(s) 332, 461, 787
Bsh1236I CGCG 1 cut(s) 946
BshFI GGCC 4 cut(s) 141, 636, 955, 1249
BshNI GGYRCC 1 cut(s) 503
BsiHKAI GWGCWC 1 cut(s) 1239
BsiSI CCGG 1 cut(s) 756
BslI CCNNNNNNNGG 3 cut(s) 37, 105, 295
BsmAI GTCTC 3 cut(s) 582, 623, 746
BsmBI CGTCTC 1 cut(s) 623
BsnI GGCC 4 cut(s) 141, 636, 955, 1249
Bso31I GGTCTC 1 cut(s) 746
Bsp119I TTCGAA 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 1239
Bsp1407I TGTACA 2 cut(s) 1114, 1149
Bsp143I GATC 9 cut(s) 19, 124, 259, 469, 772, 783, 841, 986, 1219
Bsp19I CCATGG 1 cut(s) 1241
BspACI CCGC 3 cut(s) 263, 429, 507
BspANI GGCC 4 cut(s) 141, 636, 955, 1249
BspCNI CTCAG 1 cut(s) 730
BspFNI CGCG 1 cut(s) 946
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 4 cut(s) 126, 505, 774, 1089
BspPI GGATC 7 cut(s) 119, 132, 254, 464, 767, 780, 994
BspQI GCTCTTC 1 cut(s) 423
BspT104I TTCGAA 1 cut(s) 270
BspT107I GGYRCC 1 cut(s) 503
BspTNI GGTCTC 1 cut(s) 746
BsrBI CCGCTC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 595
BsrGI TGTACA 2 cut(s) 1114, 1149
BsrI ACTGG 4 cut(s) 697, 988, 1228, 1278
BssECI CCNNGG 2 cut(s) 289, 1241
BssMI GATC 9 cut(s) 19, 124, 259, 469, 772, 783, 841, 986, 1219
BssNI GRCGYC 1 cut(s) 928
BssSI CACGAG 1 cut(s) 744
BssT1I CCWWGG 1 cut(s) 1241
Bst2BI CACGAG 1 cut(s) 744
Bst2UI CCWGG 1 cut(s) 1192
Bst4CI ACNGT 2 cut(s) 240, 1037
Bst6I CTCTTC 2 cut(s) 199, 423
BstACI GRCGYC 1 cut(s) 928
BstAPI GCANNNNNTGC 1 cut(s) 396
BstAUI TGTACA 2 cut(s) 1114, 1149
BstBI TTCGAA 1 cut(s) 270
BstC8I GCNNGC 3 cut(s) 443, 447, 953
BstDEI CTNAG 1 cut(s) 738
BstDSI CCRYGG 2 cut(s) 289, 1241
BstF5I GGATG 1 cut(s) 245
BstFNI CGCG 1 cut(s) 946
BstHHI GCGC 1 cut(s) 946
BstKTI GATC 9 cut(s) 22, 127, 262, 472, 775, 786, 844, 989, 1222
BstMAI GTCTC 3 cut(s) 582, 623, 746
BstMBI GATC 9 cut(s) 19, 124, 259, 469, 772, 783, 841, 986, 1219
BstMWI GCNNNNNNNGC 4 cut(s) 262, 396, 925, 952
BstNI CCWGG 1 cut(s) 1192
BstNSI RCATGY 1 cut(s) 449
BstSCI CCNGG 2 cut(s) 755, 1190
BstSFI CTRYAG 1 cut(s) 529
BstUI CGCG 1 cut(s) 946
BstV1I GCAGC 3 cut(s) 332, 461, 787
BstX2I RGATCY 3 cut(s) 124, 259, 772
BstYI RGATCY 3 cut(s) 124, 259, 772
BsuRI GGCC 4 cut(s) 141, 636, 955, 1249
BtgI CCRYGG 2 cut(s) 289, 1241
BtsCI GGATG 1 cut(s) 245
BtsI GCAGTG 1 cut(s) 802
BtsIMutI CAGTG 3 cut(s) 802, 1042, 1271
Cac8I GCNNGC 3 cut(s) 443, 447, 953
CciI TCATGA 1 cut(s) 279
CfoI GCGC 1 cut(s) 946
Cfr13I GGNCC 2 cut(s) 634, 1087
CseI GACGC 2 cut(s) 908, 917
CsiI ACCWGGT 1 cut(s) 1190
Csp6I GTAC 6 cut(s) 492, 504, 1043, 1115, 1150, 1161
CviAII CATG 6 cut(s) 280, 396, 446, 1112, 1147, 1242
CviQI GTAC 6 cut(s) 492, 504, 1043, 1115, 1150, 1161
DdeI CTNAG 1 cut(s) 738
DpnI GATC 9 cut(s) 21, 126, 261, 471, 774, 785, 843, 988, 1221
DpnII GATC 9 cut(s) 19, 124, 259, 469, 772, 783, 841, 986, 1219
EaeI YGGCCR 2 cut(s) 139, 1247
Eam1104I CTCTTC 2 cut(s) 199, 423
EarI CTCTTC 2 cut(s) 199, 423
Eco130I CCWWGG 1 cut(s) 1241
Eco31I GGTCTC 1 cut(s) 746
Eco32I GATATC 1 cut(s) 1105
Eco47I GGWCC 1 cut(s) 1087
EcoRI GAATTC 4 cut(s) 71, 215, 377, 549
EcoRII CCWGG 1 cut(s) 1190
EcoRV GATATC 1 cut(s) 1105
EcoT14I CCWWGG 1 cut(s) 1241
ErhI CCWWGG 1 cut(s) 1241
Esp3I CGTCTC 1 cut(s) 623
FaeI CATG 6 cut(s) 283, 399, 449, 1115, 1150, 1245
FalI AAGNNNNNCTT 2 cut(s) 1032, 1064
FatI CATG 6 cut(s) 279, 395, 445, 1111, 1146, 1241
FauNDI CATATG 2 cut(s) 310, 1292
FbaI TGATCA 1 cut(s) 841
FblI GTMKAC 3 cut(s) 931, 1032, 1264
Fnu4HI GCNGC 3 cut(s) 346, 450, 801
FokI GGATG 1 cut(s) 232
Fsp4HI GCNGC 3 cut(s) 346, 450, 801
FspBI CTAG 5 cut(s) 228, 257, 498, 804, 1079
GlaI GCGC 1 cut(s) 945
GluI GCNGC 3 cut(s) 346, 450, 801
HaeIII GGCC 4 cut(s) 141, 636, 955, 1249
HapII CCGG 1 cut(s) 756
HgaI GACGC 2 cut(s) 908, 917
HhaI GCGC 1 cut(s) 946
Hin1I GRCGYC 1 cut(s) 928
Hin1II CATG 6 cut(s) 283, 399, 449, 1115, 1150, 1245
Hin6I GCGC 1 cut(s) 944
HinP1I GCGC 1 cut(s) 944
HincII GTYRAC 1 cut(s) 981
HindII GTYRAC 1 cut(s) 981
HinfI GANTC 3 cut(s) 276, 459, 647
HpaI GTTAAC 1 cut(s) 981
HpaII CCGG 1 cut(s) 756
HphI GGTGA 1 cut(s) 981
Hpy166II GTNNAC 4 cut(s) 932, 981, 1033, 1265
Hpy188I TCNGA 7 cut(s) 124, 168, 195, 469, 526, 739, 788
Hpy188III TCNNGA 1 cut(s) 280
Hpy8I GTNNAC 4 cut(s) 932, 981, 1033, 1265
Hpy99I CGWCG 1 cut(s) 924
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 2 cut(s) 240, 1037
HpyCH4IV ACGT 1 cut(s) 373
HpyF10VI GCNNNNNNNGC 4 cut(s) 262, 396, 925, 952
HpyF3I CTNAG 1 cut(s) 738
HpySE526I ACGT 1 cut(s) 373
Hsp92I GRCGYC 1 cut(s) 928
Hsp92II CATG 6 cut(s) 283, 399, 449, 1115, 1150, 1245
HspAI GCGC 1 cut(s) 944
KpnI GGTACC 1 cut(s) 507
Ksp22I TGATCA 1 cut(s) 841
KspAI GTTAAC 1 cut(s) 981
Kzo9I GATC 9 cut(s) 19, 124, 259, 469, 772, 783, 841, 986, 1219
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 2 cut(s) 1067, 1242
Lsp1109I GCAGC 3 cut(s) 332, 461, 787
LweI GCATC 4 cut(s) 665, 743, 862, 1127
MabI ACCWGGT 1 cut(s) 1190
MaeI CTAG 5 cut(s) 228, 257, 498, 804, 1079
MaeII ACGT 1 cut(s) 373
MalI GATC 9 cut(s) 21, 126, 261, 471, 774, 785, 843, 988, 1221
MbiI CCGCTC 1 cut(s) 431
MboI GATC 9 cut(s) 19, 124, 259, 469, 772, 783, 841, 986, 1219
MboII GAAGA 9 cut(s) 181, 216, 311, 410, 497, 545, 651, 1067, 1292
MflI RGATCY 3 cut(s) 124, 259, 772
MhlI GDGCHC 1 cut(s) 1239
MlsI TGGCCA 1 cut(s) 1249
MluCI AATT 8 cut(s) 71, 215, 377, 520, 549, 602, 998, 1283
MluNI TGGCCA 1 cut(s) 1249
MlyI GAGTC 2 cut(s) 285, 656
MmeI TCCRAC 1 cut(s) 436
MnlI CCTC 9 cut(s) 72, 200, 205, 432, 475, 567, 753, 917, 1093
Mox20I TGGCCA 1 cut(s) 1249
MscI TGGCCA 1 cut(s) 1249
MseI TTAA 4 cut(s) 513, 519, 879, 980
Msp20I TGGCCA 1 cut(s) 1249
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 1 cut(s) 756
MspR9I CCNGG 2 cut(s) 757, 1192
MvaI CCWGG 1 cut(s) 1192
MvnI CGCG 1 cut(s) 946
MwoI GCNNNNNNNGC 4 cut(s) 262, 396, 925, 952
NciI CCSGG 1 cut(s) 757
NcoI CCATGG 1 cut(s) 1241
NdeI CATATG 2 cut(s) 310, 1292
NdeII GATC 9 cut(s) 19, 124, 259, 469, 772, 783, 841, 986, 1219
NlaIII CATG 6 cut(s) 283, 399, 449, 1115, 1150, 1245
NlaIV GGNNCC 4 cut(s) 126, 505, 774, 1089
NspI RCATGY 1 cut(s) 449
NspV TTCGAA 1 cut(s) 270
PaeI GCATGC 1 cut(s) 449
PagI TCATGA 1 cut(s) 279
PciSI GCTCTTC 1 cut(s) 423
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PfeI GAWTC 1 cut(s) 459
PflMI CCANNNNNTGG 2 cut(s) 105, 295
PkrI GCNGC 3 cut(s) 347, 451, 802
PleI GAGTC 2 cut(s) 284, 655
PpsI GAGTC 2 cut(s) 284, 655
PshBI ATTAAT 1 cut(s) 519
PsiI TTATAA 2 cut(s) 729, 1059
Psp6I CCWGG 1 cut(s) 1190
PspGI CCWGG 1 cut(s) 1190
PspN4I GGNNCC 4 cut(s) 126, 505, 774, 1089
PspPI GGNCC 2 cut(s) 634, 1087
PsuI RGATCY 3 cut(s) 124, 259, 772
RsaI GTAC 6 cut(s) 493, 505, 1044, 1116, 1151, 1162
RsaNI GTAC 6 cut(s) 492, 504, 1043, 1115, 1150, 1161
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 4 cut(s) 513, 519, 879, 980
SatI GCNGC 3 cut(s) 346, 450, 801
Sau3AI GATC 9 cut(s) 19, 124, 259, 469, 772, 783, 841, 986, 1219
Sau96I GGNCC 2 cut(s) 634, 1087
ScaI AGTACT 2 cut(s) 493, 1044
SchI GAGTC 2 cut(s) 285, 656
ScrFI CCNGG 2 cut(s) 757, 1192
SduI GDGCHC 1 cut(s) 1239
SexAI ACCWGGT 1 cut(s) 1190
SfaNI GCATC 4 cut(s) 665, 743, 862, 1127
SfcI CTRYAG 1 cut(s) 529
SfuI TTCGAA 1 cut(s) 270
SinI GGWCC 1 cut(s) 1087
SpeI ACTAGT 1 cut(s) 497
SphI GCATGC 1 cut(s) 449
Sse9I AATT 8 cut(s) 71, 215, 377, 520, 549, 602, 998, 1283
SsiI CCGC 3 cut(s) 263, 429, 507
SspI AATATT 2 cut(s) 517, 1205
SspMI CTAG 5 cut(s) 228, 257, 498, 804, 1079
StyD4I CCNGG 2 cut(s) 755, 1190
StyI CCWWGG 1 cut(s) 1241
TaaI ACNGT 2 cut(s) 240, 1037
TaiI ACGT 1 cut(s) 376
TaqI TCGA 4 cut(s) 270, 433, 650, 922
TasI AATT 8 cut(s) 71, 215, 377, 520, 549, 602, 998, 1283
TatI WGTACW 4 cut(s) 491, 1042, 1114, 1149
TfiI GAWTC 1 cut(s) 459
Tru1I TTAA 4 cut(s) 513, 519, 879, 980
Tru9I TTAA 4 cut(s) 513, 519, 879, 980
TscAI CASTG 3 cut(s) 802, 1042, 1278
TseI GCWGC 3 cut(s) 345, 449, 800
TspDTI ATGAA 7 cut(s) 124, 451, 595, 975, 1022, 1100, 1135
TspGWI ACGGA 5 cut(s) 117, 306, 894, 1140, 1226
TspRI CASTG 3 cut(s) 802, 1042, 1278
Van91I CCANNNNNTGG 2 cut(s) 105, 295
VpaK11BI GGWCC 1 cut(s) 1087
VspI ATTAAT 1 cut(s) 519
XapI RAATTY 5 cut(s) 71, 215, 377, 549, 602
XceI RCATGY 1 cut(s) 449
XmiI GTMKAC 3 cut(s) 931, 1032, 1264
XspI CTAG 5 cut(s) 228, 257, 498, 804, 1079
ZrmI AGTACT 2 cut(s) 493, 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.