Rh5DG560700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000668
Physical Location & Seq
Reverse (-)
86523957 .. 86524670
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG560700.1

Sequence Viewer

Length: 714 bp
ATGTATTTCTGCAGTCGTTTCTCCAAATTCATTGTTGAGGTATTCTCTTTTGAGACGGGTGAATGGAGAGAGTCAATTGTATCATCCCCACGAAGCATTAACATTAGAGACACTAGCGTTGCTTACAATGGAATGTTGTATTGGACATATACAGCATCTAAGCCTCGTGAGGAGACCGGACTTATTAGGCTGGATCCGTTTGTGATCGGCAATGACAGTGCTAGTAGTGGTAGGCCTAATTGTGATGAGATTGTTGACGATGATCAGTACCGATTTCGTCTATTTGATGCAGTTGAGAATCTTTTAGACAGGCCATGGATATGTGTTCGCCAAGGGCGTCTACAAATGTGGGCCTACTATCACTGGGATTATAATTTTATTGTTTGGGAGTTAACAGGTAATGATGATCTTGGATCAGCTGACAAATTGTATTTGAAAGAATTGAGTGTTTATCCGGTAACCAGCAAAGTTCTTGAATATGATGATGGAGCTGTTCTTCTAGCTTTGGAACCGAATGATGAGGATATCGTTTATGTAAAAAGCTACCCAATATGCTATTTCATGTACAACATTCGTAGAAGAAGGTGGTCAAAAGTAGCTAGCACCAAGTATTTTGAAGAGTTGTGGTCAGACAATCATCTCTTTCGATTGGTGCTCCCCTGGTGGCCAACACCACTTCGTAGACTACCAATGGTTGAAGAATTACCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

237

Amino Acids

28.22

Weight (kDa)

4.95

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 10 - 198 5.5e-07 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AccI GTMKAC 2 cut(s) 340, 682
AclWI GGATC 3 cut(s) 188, 201, 421
AcoI YGGCCR 1 cut(s) 665
AcsI RAATTY 1 cut(s) 26
AcyI GRCGYC 1 cut(s) 337
AfaI GTAC 2 cut(s) 269, 566
AgsI TTSAA 4 cut(s) 436, 476, 617, 698
AjnI CCWGG 1 cut(s) 659
AjuI GAANNNNNNNTTGG 2 cut(s) 124, 156
AluBI AGCT 5 cut(s) 419, 491, 503, 543, 599
AluI AGCT 5 cut(s) 419, 491, 503, 543, 599
Alw21I GWGCWC 1 cut(s) 657
Alw26I GTCTC 3 cut(s) 47, 102, 167
AlwI GGATC 3 cut(s) 188, 201, 421
AoxI GGCC 4 cut(s) 233, 311, 351, 665
ApoI RAATTY 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 71
AsuNHI GCTAGC 1 cut(s) 599
BalI TGGCCA 1 cut(s) 667
BamHI GGATCC 1 cut(s) 193
BauI CACGAG 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 657
BccI CCATC 1 cut(s) 479
BciT130I CCWGG 1 cut(s) 661
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 3 cut(s) 47, 102, 167
BfaI CTAG 4 cut(s) 114, 222, 500, 600
BfmI CTRYAG 1 cut(s) 10
Bme1390I CCNGG 1 cut(s) 661
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 2 cut(s) 195, 510
BmrFI CCNGG 1 cut(s) 661
BmrI ACTGGG 1 cut(s) 373
BmsI GCATC 2 cut(s) 164, 277
BmtI GCTAGC 1 cut(s) 603
BmuI ACTGGG 1 cut(s) 373
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BsaHI GRCGYC 1 cut(s) 337
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 314, 331, 659
BsaWI WCCGGW 2 cut(s) 176, 454
Bse1I ACTGG 1 cut(s) 368
Bse3DI GCAATG 1 cut(s) 217
BseBI CCWGG 1 cut(s) 661
BseDI CCNNGG 3 cut(s) 314, 331, 659
BseGI GGATG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 217
BseNI ACTGG 1 cut(s) 368
BseRI GAGGAG 1 cut(s) 185
BshFI GGCC 4 cut(s) 235, 313, 353, 667
BsiHKAI GWGCWC 1 cut(s) 657
BsiSI CCGG 2 cut(s) 177, 455
BsmAI GTCTC 3 cut(s) 47, 102, 167
BsmBI CGTCTC 1 cut(s) 47
BsnI GGCC 4 cut(s) 235, 313, 353, 667
Bso31I GGTCTC 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 657
Bsp1407I TGTACA 1 cut(s) 564
Bsp143I GATC 5 cut(s) 193, 204, 262, 406, 413
Bsp19I CCATGG 1 cut(s) 314
BspANI GGCC 4 cut(s) 235, 313, 353, 667
BspLI GGNNCC 2 cut(s) 195, 510
BspMAI CTGCAG 1 cut(s) 14
BspOI GCTAGC 1 cut(s) 603
BspPI GGATC 3 cut(s) 188, 201, 421
BspTNI GGTCTC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 217
BsrGI TGTACA 1 cut(s) 564
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 3 cut(s) 314, 331, 659
BssMI GATC 5 cut(s) 193, 204, 262, 406, 413
BssNI GRCGYC 1 cut(s) 337
BssSI CACGAG 1 cut(s) 165
BssT1I CCWWGG 2 cut(s) 314, 331
Bst2BI CACGAG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 661
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 612
BstACI GRCGYC 1 cut(s) 337
BstAUI TGTACA 1 cut(s) 564
BstC8I GCNNGC 1 cut(s) 601
BstDEI CTNAG 1 cut(s) 159
BstDSI CCRYGG 1 cut(s) 314
BstEII GGTNACC 1 cut(s) 457
BstF5I GGATG 1 cut(s) 83
BstKTI GATC 5 cut(s) 196, 207, 265, 409, 416
BstMAI GTCTC 3 cut(s) 47, 102, 167
BstMBI GATC 5 cut(s) 193, 204, 262, 406, 413
BstNI CCWGG 1 cut(s) 661
BstPI GGTNACC 1 cut(s) 457
BstSCI CCNGG 1 cut(s) 659
BstSFI CTRYAG 1 cut(s) 10
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 4 cut(s) 235, 313, 353, 667
BtgI CCRYGG 1 cut(s) 314
BtsCI GGATG 1 cut(s) 83
BtsIMutI CAGTG 2 cut(s) 223, 361
Cac8I GCNNGC 1 cut(s) 601
Cfr13I GGNCC 1 cut(s) 351
CseI GACGC 1 cut(s) 326
Csp6I GTAC 2 cut(s) 268, 565
CviAII CATG 2 cut(s) 315, 562
CviQI GTAC 2 cut(s) 268, 565
DdeI CTNAG 1 cut(s) 159
DpnI GATC 5 cut(s) 195, 206, 264, 408, 415
DpnII GATC 5 cut(s) 193, 204, 262, 406, 413
EaeI YGGCCR 1 cut(s) 665
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco130I CCWWGG 2 cut(s) 314, 331
Eco147I AGGCCT 1 cut(s) 235
Eco31I GGTCTC 1 cut(s) 167
Eco32I GATATC 1 cut(s) 526
Eco91I GGTNACC 1 cut(s) 457
EcoO65I GGTNACC 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 659
EcoRV GATATC 1 cut(s) 526
EcoT14I CCWWGG 2 cut(s) 314, 331
ErhI CCWWGG 2 cut(s) 314, 331
Esp3I CGTCTC 1 cut(s) 47
FaeI CATG 2 cut(s) 318, 565
FatI CATG 2 cut(s) 314, 561
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 2 cut(s) 340, 682
FokI GGATG 1 cut(s) 70
FspBI CTAG 4 cut(s) 114, 222, 500, 600
HaeIII GGCC 4 cut(s) 235, 313, 353, 667
HapII CCGG 2 cut(s) 177, 455
HgaI GACGC 1 cut(s) 326
Hin1I GRCGYC 1 cut(s) 337
Hin1II CATG 2 cut(s) 318, 565
HincII GTYRAC 2 cut(s) 256, 393
HindII GTYRAC 2 cut(s) 256, 393
HinfI GANTC 2 cut(s) 71, 298
HpaI GTTAAC 1 cut(s) 393
HpaII CCGG 2 cut(s) 177, 455
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 4 cut(s) 256, 341, 393, 683
Hpy188I TCNGA 1 cut(s) 631
Hpy188III TCNNGA 2 cut(s) 167, 473
Hpy8I GTNNAC 4 cut(s) 256, 341, 393, 683
HpyAV CCTTC 1 cut(s) 576
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 12, 290
HpyF3I CTNAG 1 cut(s) 159
Hsp92I GRCGYC 1 cut(s) 337
Hsp92II CATG 2 cut(s) 318, 565
Ksp22I TGATCA 1 cut(s) 262
KspAI GTTAAC 1 cut(s) 393
Kzo9I GATC 5 cut(s) 193, 204, 262, 406, 413
LmnI GCTCC 2 cut(s) 488, 660
LpnPI CCDG 9 cut(s) 176, 190, 295, 349, 381, 468, 475, 646, 673
LweI GCATC 2 cut(s) 164, 277
MaeI CTAG 4 cut(s) 114, 222, 500, 600
MaeIII GTNAC 1 cut(s) 457
MalI GATC 5 cut(s) 195, 206, 264, 408, 415
MboI GATC 5 cut(s) 193, 204, 262, 406, 413
MboII GAAGA 4 cut(s) 488, 591, 629, 710
MfeI CAATTG 1 cut(s) 75
MflI RGATCY 1 cut(s) 193
MhlI GDGCHC 1 cut(s) 657
MlsI TGGCCA 1 cut(s) 667
MluCI AATT 7 cut(s) 26, 75, 238, 373, 425, 440, 701
MluNI TGGCCA 1 cut(s) 667
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 4 cut(s) 31, 163, 174, 514
Mox20I TGGCCA 1 cut(s) 667
MscI TGGCCA 1 cut(s) 667
MseI TTAA 2 cut(s) 99, 392
MslI CAYNNNNRTG 1 cut(s) 319
Msp20I TGGCCA 1 cut(s) 667
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 2 cut(s) 177, 455
MspR9I CCNGG 1 cut(s) 661
MunI CAATTG 1 cut(s) 75
MvaI CCWGG 1 cut(s) 661
NcoI CCATGG 1 cut(s) 314
NdeII GATC 5 cut(s) 193, 204, 262, 406, 413
NheI GCTAGC 1 cut(s) 599
NlaIII CATG 2 cut(s) 318, 565
NlaIV GGNNCC 2 cut(s) 195, 510
PceI AGGCCT 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 334
PfeI GAWTC 1 cut(s) 298
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PsiI TTATAA 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 659
PspEI GGTNACC 1 cut(s) 457
PspGI CCWGG 1 cut(s) 659
PspN4I GGNNCC 2 cut(s) 195, 510
PspPI GGNCC 1 cut(s) 351
PstI CTGCAG 1 cut(s) 14
PsuI RGATCY 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 2 cut(s) 269, 566
RsaNI GTAC 2 cut(s) 268, 565
RseI CAYNNNNRTG 1 cut(s) 319
SaqAI TTAA 2 cut(s) 99, 392
Sau3AI GATC 5 cut(s) 193, 204, 262, 406, 413
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 661
SduI GDGCHC 1 cut(s) 657
SetI ASST 8 cut(s) 42, 400, 421, 493, 505, 545, 587, 601
SfaNI GCATC 2 cut(s) 164, 277
SfcI CTRYAG 1 cut(s) 10
SmiMI CAYNNNNRTG 1 cut(s) 319
Sse9I AATT 7 cut(s) 26, 75, 238, 373, 425, 440, 701
SseBI AGGCCT 1 cut(s) 235
SspMI CTAG 4 cut(s) 114, 222, 500, 600
StuI AGGCCT 1 cut(s) 235
StyD4I CCNGG 1 cut(s) 659
StyI CCWWGG 2 cut(s) 314, 331
TaaI ACNGT 1 cut(s) 218
TaqI TCGA 1 cut(s) 646
TasI AATT 7 cut(s) 26, 75, 238, 373, 425, 440, 701
TatI WGTACW 1 cut(s) 564
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 2 cut(s) 99, 392
Tru9I TTAA 2 cut(s) 99, 392
TscAI CASTG 2 cut(s) 223, 368
TspDTI ATGAA 2 cut(s) 19, 550
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 2 cut(s) 223, 368
XapI RAATTY 1 cut(s) 26
XmiI GTMKAC 2 cut(s) 340, 682
XspI CTAG 4 cut(s) 114, 222, 500, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.