AT1G49030

PLAC8 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000960
Physical Location & Seq
Forward (+)
18136666 .. 18138080
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G49030.1

Sequence Viewer

Length: 675 bp
ATGGGTCGACCAGACCAAACTCCGAGCCCGAGGATGAACAATAACTTTAATCCGGTCTTTCATGCACAATCTGAACAACCGGTTGACGAGAAACGGGTTCTGCAAGCTGAGCAGATATATCCCAACAACGGTGGAGTGGTTAACCAACCAAACCAAGTACCGATGAGACCTGGTCCACCTACGTATATCAATCAAAGTGCAACATTTAACCAACCATATGGAGTATCAATGGCCGGACCGGTCCATACACAGCCATCGAACTGGACTTCAGGTCTATTTGATTGCATGAACGACGGCGAAAATGCTCTCATCACATGCTGTTTTCCATTCGTCACGTTCGGACAGATCGCAGAGGTTATCGATGAAGGAGCGACCAGTTGTGGGACGGCTGGAATGTTGTATGGGTTGATATGTTGTTTGTTTGCGATACCGTGTGTGTATACATGCACATTCCGGACCAAGCTCCGAAGCAAGTACGGGTTACCGGATGCTCCAGCTCCAGATTGGATCACTCATTGCTTCTGTGAATATTGTGCTCTTTGCCAAGAATATCGTGAACTCAAGAATCGTGGCCTTGACCCTTCCATTGGATGGATTGGGAACGTGCAAAAGCAGCGAATGGGTCAGCAACAAGAGATGATGGCTCCTCCAATGGGTCAACGAATGATGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

224

Amino Acids

24.88

Weight (kDa)

5.59

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 88 - 186 2.4e-29 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 591
AccI GTMKAC 2 cut(s) 7, 440
AccIII TCCGGA 1 cut(s) 453
AclWI GGATC 1 cut(s) 515
AcoI YGGCCR 1 cut(s) 231
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 2 cut(s) 159, 476
AfiI CCNNNNNNNGG 5 cut(s) 128, 381, 587, 591, 653
AgeI ACCGGT 2 cut(s) 79, 238
AhdI GACNNNNNGTC 1 cut(s) 270
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 3 cut(s) 107, 463, 497
AluI AGCT 3 cut(s) 107, 463, 497
Alw21I GWGCWC 1 cut(s) 538
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 1 cut(s) 515
Ama87I CYCGRG 1 cut(s) 28
Aor13HI TCCGGA 1 cut(s) 453
AoxI GGCC 2 cut(s) 231, 571
ApeKI GCWGC 1 cut(s) 613
AsiGI ACCGGT 2 cut(s) 79, 238
AspS9I GGNCC 4 cut(s) 173, 236, 241, 456
AvaI CYCGRG 1 cut(s) 28
AvaII GGWCC 4 cut(s) 173, 236, 241, 456
BanII GRGCYC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 538
BbvI GCAGC 1 cut(s) 625
BccI CCATC 4 cut(s) 262, 585, 634, 661
BceAI ACGGC 2 cut(s) 310, 402
BciT130I CCWGG 1 cut(s) 171
BcoDI GTCTC 1 cut(s) 160
BisI GCNGC 1 cut(s) 614
BlpI GCTNAGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 615
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 4 cut(s) 173, 236, 241, 456
BmeRI GACNNNNNGTC 1 cut(s) 270
BmeT110I CYCGRG 1 cut(s) 28
BmgT120I GGNCC 4 cut(s) 173, 236, 241, 456
BmiI GGNNCC 1 cut(s) 645
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 478
BpmI CTGGAG 2 cut(s) 477, 483
Bpu1102I GCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 545
Bsa29I ATCGAT 1 cut(s) 360
BsaAI YACGTR 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 29
BsaWI WCCGGW 5 cut(s) 52, 79, 238, 453, 484
Bsc4I CCNNNNNNNGG 5 cut(s) 128, 381, 587, 591, 653
Bse118I RCCGGY 2 cut(s) 79, 238
Bse1I ACTGG 2 cut(s) 266, 375
Bse3DI GCAATG 1 cut(s) 514
BseAI TCCGGA 1 cut(s) 453
BseBI CCWGG 1 cut(s) 171
BseCI ATCGAT 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 3 cut(s) 39, 493, 596
BseLI CCNNNNNNNGG 5 cut(s) 128, 381, 587, 591, 653
BseMI GCAATG 1 cut(s) 514
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 2 cut(s) 266, 375
BseRI GAGGAG 1 cut(s) 636
BseXI GCAGC 1 cut(s) 625
BshFI GGCC 2 cut(s) 233, 573
BshTI ACCGGT 2 cut(s) 79, 238
BshVI ATCGAT 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 538
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 6 cut(s) 53, 80, 234, 239, 454, 485
BslFI GGGAC 1 cut(s) 397
BslI CCNNNNNNNGG 5 cut(s) 128, 381, 587, 591, 653
BsmAI GTCTC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 397
BsnI GGCC 2 cut(s) 233, 573
Bso31I GGTCTC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 28
Bsp1286I GDGCHC 2 cut(s) 29, 538
Bsp13I TCCGGA 1 cut(s) 453
Bsp143I GATC 2 cut(s) 345, 507
Bsp1720I GCTNAGC 1 cut(s) 108
BspANI GGCC 2 cut(s) 233, 573
BspCNI CTCAG 1 cut(s) 100
BspDI ATCGAT 1 cut(s) 360
BspEI TCCGGA 1 cut(s) 453
BspLI GGNNCC 1 cut(s) 645
BspPI GGATC 1 cut(s) 515
BspTNI GGTCTC 1 cut(s) 160
BsrDI GCAATG 1 cut(s) 514
BsrFI RCCGGY 2 cut(s) 79, 238
BsrI ACTGG 2 cut(s) 266, 375
BssAI RCCGGY 2 cut(s) 79, 238
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 2 cut(s) 345, 507
BssNAI GTATAC 1 cut(s) 441
Bst1107I GTATAC 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 131, 432
BstBAI YACGTR 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 108
BstEII GGTNACC 1 cut(s) 480
BstF5I GGATG 3 cut(s) 39, 493, 596
BstKTI GATC 2 cut(s) 348, 510
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 2 cut(s) 345, 507
BstMWI GCNNNNNNNGC 2 cut(s) 109, 613
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 2 cut(s) 318, 447
BstPI GGTNACC 1 cut(s) 480
BstSCI CCNGG 1 cut(s) 169
BstSNI TACGTA 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 625
BstXI CCANNNNNNTGG 2 cut(s) 218, 261
BstZ17I GTATAC 1 cut(s) 441
Bsu15I ATCGAT 1 cut(s) 360
BsuRI GGCC 2 cut(s) 233, 573
BsuTUI ATCGAT 1 cut(s) 360
BtsCI GGATG 3 cut(s) 39, 493, 596
Cac8I GCNNGC 1 cut(s) 105
Cfr10I RCCGGY 2 cut(s) 79, 238
Cfr13I GGNCC 4 cut(s) 173, 236, 241, 456
ClaI ATCGAT 1 cut(s) 360
CpoI CGGWCCG 1 cut(s) 236
CsiI ACCWGGT 1 cut(s) 169
Csp6I GTAC 2 cut(s) 158, 475
CspAI ACCGGT 2 cut(s) 79, 238
CspCI CAANNNNNGTGG 4 cut(s) 112, 147, 550, 585
CspI CGGWCCG 1 cut(s) 236
CviAII CATG 4 cut(s) 62, 286, 315, 444
CviJI RGCY 9 cut(s) 27, 107, 233, 253, 389, 463, 497, 573, 644
CviKI_1 RGCY 9 cut(s) 27, 107, 233, 253, 389, 463, 497, 573, 644
CviQI GTAC 2 cut(s) 158, 475
DdeI CTNAG 1 cut(s) 108
DpnI GATC 2 cut(s) 347, 509
DpnII GATC 2 cut(s) 345, 507
DriI GACNNNNNGTC 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 231
Eam1105I GACNNNNNGTC 1 cut(s) 270
Eco105I TACGTA 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 29
Eco31I GGTCTC 1 cut(s) 160
Eco47I GGWCC 4 cut(s) 173, 236, 241, 456
Eco57I CTGAAG 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 28
Eco91I GGTNACC 1 cut(s) 480
EcoO65I GGTNACC 1 cut(s) 480
EcoRII CCWGG 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 29
FaeI CATG 4 cut(s) 65, 289, 318, 447
FaqI GGGAC 1 cut(s) 397
FatI CATG 4 cut(s) 61, 285, 314, 443
FauNDI CATATG 1 cut(s) 217
FblI GTMKAC 2 cut(s) 7, 440
Fnu4HI GCNGC 1 cut(s) 614
FokI GGATG 3 cut(s) 46, 500, 603
FriOI GRGCYC 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 614
GluI GCNGC 1 cut(s) 614
GsuI CTGGAG 2 cut(s) 477, 483
HaeIII GGCC 2 cut(s) 233, 573
HapII CCGG 6 cut(s) 53, 80, 234, 239, 454, 485
Hin1II CATG 4 cut(s) 65, 289, 318, 447
HincII GTYRAC 4 cut(s) 8, 85, 142, 659
HindII GTYRAC 4 cut(s) 8, 85, 142, 659
HinfI GANTC 1 cut(s) 565
HpaI GTTAAC 1 cut(s) 142
HpaII CCGG 6 cut(s) 53, 80, 234, 239, 454, 485
Hpy166II GTNNAC 7 cut(s) 8, 85, 142, 176, 441, 557, 659
Hpy188I TCNGA 4 cut(s) 24, 73, 341, 467
Hpy188III TCNNGA 4 cut(s) 454, 500, 554, 562
Hpy8I GTNNAC 7 cut(s) 8, 85, 142, 176, 441, 557, 659
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 2 cut(s) 359, 591
HpyCH4III ACNGT 2 cut(s) 131, 432
HpyCH4IV ACGT 3 cut(s) 182, 335, 603
HpyCH4V TGCA 6 cut(s) 65, 103, 200, 285, 447, 607
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 613
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 3 cut(s) 182, 335, 603
Hsp92II CATG 4 cut(s) 65, 289, 318, 447
Kpn2I TCCGGA 1 cut(s) 453
KspAI GTTAAC 1 cut(s) 142
Kzo9I GATC 2 cut(s) 345, 507
LmnI GCTCC 5 cut(s) 368, 468, 496, 502, 649
Lsp1109I GCAGC 1 cut(s) 625
LweI GCATC 1 cut(s) 478
MabI ACCWGGT 1 cut(s) 169
MaeII ACGT 3 cut(s) 182, 335, 603
MaeIII GTNAC 2 cut(s) 331, 480
MalI GATC 2 cut(s) 347, 509
MboI GATC 2 cut(s) 345, 507
MhlI GDGCHC 2 cut(s) 29, 538
MnlI CCTC 3 cut(s) 24, 346, 657
MroI TCCGGA 1 cut(s) 453
MseI TTAA 3 cut(s) 48, 141, 207
MspI CCGG 6 cut(s) 53, 80, 234, 239, 454, 485
MspR9I CCNGG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 109, 613
NdeI CATATG 1 cut(s) 217
NdeII GATC 2 cut(s) 345, 507
NlaIII CATG 4 cut(s) 65, 289, 318, 447
NlaIV GGNNCC 1 cut(s) 645
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 2 cut(s) 318, 447
PfeI GAWTC 1 cut(s) 565
PflFI GACNNNGTC 1 cut(s) 171
PflMI CCANNNNNTGG 1 cut(s) 591
PinAI ACCGGT 2 cut(s) 79, 238
PkrI GCNGC 1 cut(s) 615
Ppu21I YACGTR 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 480
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 645
PspPI GGNCC 4 cut(s) 173, 236, 241, 456
PsyI GACNNNGTC 1 cut(s) 171
RsaI GTAC 2 cut(s) 159, 476
RsaNI GTAC 2 cut(s) 158, 475
Rsr2I CGGWCCG 1 cut(s) 236
RsrII CGGWCCG 1 cut(s) 236
SalI GTCGAC 1 cut(s) 6
SaqAI TTAA 3 cut(s) 48, 141, 207
SatI GCNGC 1 cut(s) 614
Sau3AI GATC 2 cut(s) 345, 507
Sau96I GGNCC 4 cut(s) 173, 236, 241, 456
ScrFI CCNGG 1 cut(s) 171
SduI GDGCHC 2 cut(s) 29, 538
SexAI ACCWGGT 1 cut(s) 169
SfaNI GCATC 1 cut(s) 478
SinI GGWCC 4 cut(s) 173, 236, 241, 456
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
SnaBI TACGTA 1 cut(s) 183
SspI AATATT 1 cut(s) 530
StyD4I CCNGG 1 cut(s) 169
TaaI ACNGT 2 cut(s) 131, 432
TaiI ACGT 3 cut(s) 185, 338, 606
TaqI TCGA 3 cut(s) 7, 257, 360
TfiI GAWTC 1 cut(s) 565
Tru1I TTAA 3 cut(s) 48, 141, 207
Tru9I TTAA 3 cut(s) 48, 141, 207
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 1 cut(s) 613
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 4 cut(s) 50, 50, 302, 378
Tth111I GACNNNGTC 1 cut(s) 171
Van91I CCANNNNNTGG 1 cut(s) 591
VpaK11BI GGWCC 4 cut(s) 173, 236, 241, 456
XceI RCATGY 2 cut(s) 318, 447
XcmI CCANNNNNNNNNTGG 1 cut(s) 501
XmiI GTMKAC 2 cut(s) 7, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.