Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000960

Physical Location & Seq

Genomic Coordinates Forward (+)

3074397 .. 3075212

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G043000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGTGAAATTGATCTTGTGGTTGCATCACATGCTTTCTCCCATGCATCACGTTCGGCCGAATCGCAGAAATTGTCTACGAAGGACGAAATTTTCTTTAGTAATAATCATGTGATCACTTTGTCTTGCCTTTCCCATAGCATAGTGTACGGGTTGTTGTGCACGCTGCAGTGCCAGTGGGTCTACTCATGCATGTATAGACACAGATTGCGCCAAAAATTTGTTCTGCCAGACGAGCCTTGTGGTGATTGTTGTGTTCATTTCTTCTGTGAACCGTGTGCCCTCTGCCAAGAACATGATGAGCTCAAATCTAGAGGCTTCAACCCCTCCAAAGGTTGGATTGGGCCACCTACGCTGCTCCACAGATGCCTCCTTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

127

Amino Acids

14.37

Weight (kDa)

7.05

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49030 AT3G18450 AT3G18460 AT3G18470
fragaria_vesca	FvH4_3g18880 FvH4_4g04070 FvH4_5g12451 FvH4_5g12460 FvH4_5g12460
malus_domestica	MD06G1212900.v1.1 MD06G1213000.v1.1 MD13G1217200.v1.1 MD13G1217300.v1.1 MD14G1224000.v1.1 MD14G1224100.v1.1 MD16G1222500.v1.1
prunus_persica	Prupe.1G042600_v2.0.a1 Prupe.1G042800_v2.0.a1 Prupe.1G043000_v2.0.a1 Prupe.1G043200_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043500_v2.0.a1 Prupe.1G043800_v2.0.a1 Prupe.1G347800_v2.0.a1 Prupe.5G219400_v2.0.a1 Prupe.5G219500_v2.0.a1
pyrus_communis	pycom06g19040 pycom06g19060 pycom06g19070 pycom14g18540
rosa_chinensis	RchiOBHm_Chr4g0394451 RchiOBHm_Chr4g0394461 RchiOBHm_Chr7g0185011
rosa_laevigata	RLG00000004939 RLG00000004940 RLG00000009697
rosa_multiflora	Rmu_ssc0000289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269270 Rroxscaffold_3G00269280 Rroxscaffold_5G00339460 Rroxscaffold_5G00339480
rosa_rugosa	Rorug03G0366000.1 Rorug03G0366100.1 Rorug03G0366800.1 Rorug06G0466200 Rorug06G0466200
rosa_samantha	Rh4BG049800 Rh7AG076800 Rh7AG076900 Rh7BG070500 Rh7BG070600 Rh7CG072000 Rh7CG072100 Rh7DG071000 Rh7DG071100
rosa_wichuraiana	Rw0G003400 Rw0G003410 Rw4G004200 Rw7G005870 Rw7G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	336
AccI	GTMKAC	2 cut(s)	77, 183
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	2 cut(s)	90, 218
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	332, 336
AgsI	TTSAA	1 cut(s)	322
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
Alw21I	GWGCWC	2 cut(s)	164, 306
Alw44I	GTGCAC	1 cut(s)	160
AoxI	GGCC	2 cut(s)	57, 344
ApaLI	GTGCAC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	166, 355
ApoI	RAATTY	2 cut(s)	90, 218
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	2 cut(s)	17, 257
BaeGI	GKGCMC	2 cut(s)	164, 283
BanII	GRGCYC	1 cut(s)	306
Bbv12I	GWGCWC	2 cut(s)	164, 306
BbvI	GCAGC	2 cut(s)	153, 342
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BclI	TGATCA	1 cut(s)	114
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	167
BisI	GCNGC	2 cut(s)	167, 356
BlsI	GCNGC	2 cut(s)	168, 357
BmgT120I	GGNCC	1 cut(s)	344
BmsI	GCATC	3 cut(s)	35, 56, 356
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 336
Bse1I	ACTGG	1 cut(s)	175
BseLI	CCNNNNNNNGG	2 cut(s)	332, 336
BseNI	ACTGG	1 cut(s)	175
BseSI	GKGCMC	2 cut(s)	164, 283
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	153, 342
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	59, 346
BsiEI	CGRYCG	1 cut(s)	60
BsiHKAI	GWGCWC	2 cut(s)	164, 306
BslI	CCNNNNNNNGG	2 cut(s)	332, 336
BsnI	GGCC	2 cut(s)	59, 346
Bsp1286I	GDGCHC	3 cut(s)	164, 283, 306
Bsp143I	GATC	2 cut(s)	13, 114
BspANI	GGCC	2 cut(s)	59, 346
BspMAI	CTGCAG	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	175
BssMI	GATC	2 cut(s)	13, 114
Bst4CI	ACNGT	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	2 cut(s)	16, 117
BstMBI	GATC	2 cut(s)	13, 114
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 235, 352
BstNSI	RCATGY	2 cut(s)	35, 196
BstSFI	CTRYAG	1 cut(s)	167
BstSLI	GKGCMC	2 cut(s)	164, 283
BstV1I	GCAGC	2 cut(s)	153, 342
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	59, 346
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	176, 182
Cac8I	GCNNGC	1 cut(s)	164
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	6 cut(s)	32, 44, 110, 189, 193, 296
CviJI	RGCY	5 cut(s)	59, 238, 304, 318, 346
CviKI_1	RGCY	5 cut(s)	59, 238, 304, 318, 346
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	2 cut(s)	15, 116
DpnII	GATC	2 cut(s)	13, 114
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	304
EclXI	CGGCCG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	306
Eco52I	CGGCCG	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	304
EcoICRI	GAGCTC	1 cut(s)	304
EcoT22I	ATGCAT	2 cut(s)	49, 194
EcoT38I	GRGCYC	1 cut(s)	306
FaeI	CATG	6 cut(s)	35, 47, 113, 192, 196, 299
FaiI	YATR	9 cut(s)	33, 45, 111, 138, 143, 190, 194, 198, 297
FatI	CATG	6 cut(s)	31, 43, 109, 188, 192, 295
FbaI	TGATCA	1 cut(s)	114
FblI	GTMKAC	2 cut(s)	77, 183
Fnu4HI	GCNGC	2 cut(s)	167, 356
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	2 cut(s)	167, 356
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	2 cut(s)	167, 356
HaeIII	GGCC	2 cut(s)	59, 346
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	6 cut(s)	35, 47, 113, 192, 196, 299
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	62
HphI	GGTGA	2 cut(s)	17, 257
Hpy166II	GTNNAC	5 cut(s)	78, 148, 162, 184, 272
Hpy188III	TCNNGA	1 cut(s)	312
Hpy8I	GTNNAC	5 cut(s)	78, 148, 162, 184, 272
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	5 cut(s)	26, 47, 162, 169, 192
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 235, 352
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	6 cut(s)	35, 47, 113, 192, 196, 299
HspAI	GCGC	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	13, 114
LmnI	GCTCC	1 cut(s)	363
LpnPI	CCDG	2 cut(s)	188, 243
Lsp1109I	GCAGC	2 cut(s)	153, 342
LweI	GCATC	3 cut(s)	35, 56, 356
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	1 cut(s)	52
MalI	GATC	2 cut(s)	15, 116
MboI	GATC	2 cut(s)	13, 114
MboII	GAAGA	1 cut(s)	256
MhlI	GDGCHC	3 cut(s)	164, 283, 306
MluCI	AATT	4 cut(s)	9, 71, 90, 218
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	4 cut(s)	293, 308, 337, 380
Mph1103I	ATGCAT	2 cut(s)	49, 194
MwoI	GCNNNNNNNGC	3 cut(s)	32, 235, 352
NdeII	GATC	2 cut(s)	13, 114
NlaIII	CATG	6 cut(s)	35, 47, 113, 192, 196, 299
NsiI	ATGCAT	2 cut(s)	49, 194
NspI	RCATGY	2 cut(s)	35, 196
PfeI	GAWTC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	336
PkrI	GCNGC	2 cut(s)	168, 357
Psp124BI	GAGCTC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	171
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SacI	GAGCTC	1 cut(s)	306
SatI	GCNGC	2 cut(s)	167, 356
Sau3AI	GATC	2 cut(s)	13, 114
Sau96I	GGNCC	1 cut(s)	344
SduI	GDGCHC	3 cut(s)	164, 283, 306
SetI	ASST	4 cut(s)	55, 306, 337, 352
SfaNI	GCATC	3 cut(s)	35, 56, 356
SfcI	CTRYAG	1 cut(s)	167
Sse9I	AATT	4 cut(s)	9, 71, 90, 218
SspMI	CTAG	1 cut(s)	312
SstI	GAGCTC	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	376
TasI	AATT	4 cut(s)	9, 71, 90, 218
TfiI	GAWTC	1 cut(s)	62
TscAI	CASTG	2 cut(s)	176, 182
TseI	GCWGC	2 cut(s)	166, 355
TspDTI	ATGAA	1 cut(s)	248
TspRI	CASTG	2 cut(s)	176, 182
Van91I	CCANNNNNTGG	1 cut(s)	336
VneI	GTGCAC	1 cut(s)	160
XapI	RAATTY	2 cut(s)	90, 218
XbaI	TCTAGA	1 cut(s)	311
XceI	RCATGY	2 cut(s)	35, 196
XmiI	GTMKAC	2 cut(s)	77, 183
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	2 cut(s)	49, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.