Prupe.1G043300_v2.0.a1

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000960
Physical Location & Seq
Forward (+)
3098597 .. 3100315
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G043300.2

Sequence Viewer

Length: 414 bp
ATGAACGTTGATTATGGTCATCGCCCTCAGCAGTGGTCGCATGGTTTTTGTAAGTGTGGAGGAAGTTTGGGTACATGTTGCCTCACATGGTGTTTCCCATGCATCACCTTCGGCCAAAACGCAGAAATTGTCGACGAAGGACGAAATTCTTGCCTTTCCCATTGCATAGTGTACGGGTTGTTGTGGACGATTCACTGCCAGTGGATCTACTCATGCATGTATAGACAGAGATTGCGCAAAAATTTTGGTCTGCCGGAGGAGCCTTGCGGTGATTGTTGTGTTCATTTCTTCTGTGGACCGTTTGCCCTCTGCCAAGAACATGCTGAGCTCAAATCTAGAGGCTTCAACCCCTCCAAAGGTTTTAAACTAATCCTACACACATATATGTCATCATTGTATAGTAATATACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

138

Amino Acids

15.69

Weight (kDa)

7.9

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 236
AccI GTMKAC 1 cut(s) 132
AciI CCGC 1 cut(s) 267
AclI AACGTT 1 cut(s) 6
AclWI GGATC 1 cut(s) 212
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 2 cut(s) 145, 241
AdeI CACNNNGTG 1 cut(s) 90
AfaI GTAC 2 cut(s) 73, 173
AfiI CCNNNNNNNGG 1 cut(s) 356
AflIII ACRYGT 1 cut(s) 74
AgsI TTSAA 1 cut(s) 346
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
Alw21I GWGCWC 1 cut(s) 330
AlwI GGATC 1 cut(s) 212
AoxI GGCC 1 cut(s) 112
ApoI RAATTY 2 cut(s) 145, 241
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 296
AsuHPI GGTGA 2 cut(s) 97, 281
AvaII GGWCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 330
BarI GAAGNNNNNNTAC 2 cut(s) 55, 87
Bbv12I GWGCWC 1 cut(s) 330
BbvCI CCTCAGC 1 cut(s) 27
BcgI CGANNNNNNTGC 4 cut(s) 91, 125, 132, 166
BfaI CTAG 1 cut(s) 336
BlpI GCTNAGC 1 cut(s) 324
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 261
BmsI GCATC 1 cut(s) 111
Bpu10I CCTNAGC 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 324
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 2 cut(s) 41, 315
BseNI ACTGG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 272
BshFI GGCC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 356
BsnI GGCC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 1 cut(s) 204
Bsp1720I GCTNAGC 1 cut(s) 324
BspACI CCGC 1 cut(s) 267
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 2 cut(s) 40, 316
BspLI GGNNCC 1 cut(s) 261
BspPI GGATC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 160
BsrI ACTGG 1 cut(s) 199
BssMI GATC 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 27, 324
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 1 cut(s) 207
BstMBI GATC 1 cut(s) 204
BstMWI GCNNNNNNNGC 2 cut(s) 37, 259
BstNSI RCATGY 3 cut(s) 78, 220, 323
BstX2I RGATCY 1 cut(s) 204
BstYI RGATCY 1 cut(s) 204
BsuRI GGCC 1 cut(s) 114
BtgZI GCGATG 1 cut(s) 5
BtsI GCAGTG 2 cut(s) 38, 193
BtsIMutI CAGTG 3 cut(s) 38, 193, 206
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 296
Csp6I GTAC 2 cut(s) 72, 172
CviAII CATG 7 cut(s) 41, 75, 87, 99, 213, 217, 320
CviJI RGCY 4 cut(s) 114, 262, 328, 342
CviKI_1 RGCY 4 cut(s) 114, 262, 328, 342
CviQI GTAC 2 cut(s) 72, 172
DdeI CTNAG 2 cut(s) 27, 324
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
DraI TTTAAA 1 cut(s) 364
DraIII CACNNNGTG 1 cut(s) 90
EaeI YGGCCR 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 328
Eco24I GRGCYC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 296
Eco53kI GAGCTC 1 cut(s) 328
EcoICRI GAGCTC 1 cut(s) 328
EcoT22I ATGCAT 2 cut(s) 104, 218
EcoT38I GRGCYC 1 cut(s) 330
FaeI CATG 7 cut(s) 44, 78, 90, 102, 216, 220, 323
FatI CATG 7 cut(s) 40, 74, 86, 98, 212, 216, 319
FblI GTMKAC 1 cut(s) 132
FriOI GRGCYC 1 cut(s) 330
FspBI CTAG 1 cut(s) 336
FspI TGCGCA 1 cut(s) 236
GlaI GCGC 1 cut(s) 236
HaeIII GGCC 1 cut(s) 114
HapII CCGG 1 cut(s) 254
HhaI GCGC 1 cut(s) 237
Hin1II CATG 7 cut(s) 44, 78, 90, 102, 216, 220, 323
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 1 cut(s) 190
HpaII CCGG 1 cut(s) 254
HphI GGTGA 2 cut(s) 97, 281
Hpy166II GTNNAC 4 cut(s) 133, 172, 186, 296
Hpy188III TCNNGA 1 cut(s) 336
Hpy8I GTNNAC 4 cut(s) 133, 172, 186, 296
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 118, 131
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 3 cut(s) 102, 165, 216
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 259
HpyF3I CTNAG 2 cut(s) 27, 324
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 7 cut(s) 44, 78, 90, 102, 216, 220, 323
HspAI GCGC 1 cut(s) 235
Kzo9I GATC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 2 cut(s) 212, 267
LweI GCATC 1 cut(s) 111
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 6
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 1 cut(s) 280
MflI RGATCY 1 cut(s) 204
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 3 cut(s) 126, 145, 241
MnlI CCTC 7 cut(s) 36, 53, 92, 250, 317, 332, 361
Mph1103I ATGCAT 2 cut(s) 104, 218
MseI TTAA 1 cut(s) 363
MslI CAYNNNNRTG 1 cut(s) 383
MspI CCGG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 37, 259
NdeII GATC 1 cut(s) 204
NlaIII CATG 7 cut(s) 44, 78, 90, 102, 216, 220, 323
NlaIV GGNNCC 1 cut(s) 261
NsbI TGCGCA 1 cut(s) 236
NsiI ATGCAT 2 cut(s) 104, 218
NspI RCATGY 3 cut(s) 78, 220, 323
PciI ACATGT 1 cut(s) 74
PfeI GAWTC 1 cut(s) 190
PscI ACATGT 1 cut(s) 74
Psp124BI GAGCTC 1 cut(s) 330
Psp1406I AACGTT 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 296
PsuI RGATCY 1 cut(s) 204
RsaI GTAC 2 cut(s) 73, 173
RsaNI GTAC 2 cut(s) 72, 172
RseI CAYNNNNRTG 1 cut(s) 383
SacI GAGCTC 1 cut(s) 330
SalI GTCGAC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 363
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 1 cut(s) 296
SduI GDGCHC 1 cut(s) 330
SetI ASST 4 cut(s) 9, 110, 330, 361
SfaNI GCATC 1 cut(s) 111
SinI GGWCC 1 cut(s) 296
SmiMI CAYNNNNRTG 1 cut(s) 383
Sse9I AATT 3 cut(s) 126, 145, 241
SsiI CCGC 1 cut(s) 267
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 1 cut(s) 330
TaaI ACNGT 1 cut(s) 300
TaiI ACGT 1 cut(s) 9
TaqI TCGA 1 cut(s) 132
TasI AATT 3 cut(s) 126, 145, 241
TfiI GAWTC 1 cut(s) 190
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 3 cut(s) 38, 200, 206
TspDTI ATGAA 2 cut(s) 17, 272
TspRI CASTG 3 cut(s) 38, 200, 206
VpaK11BI GGWCC 1 cut(s) 296
XapI RAATTY 2 cut(s) 145, 241
XbaI TCTAGA 1 cut(s) 335
XceI RCATGY 3 cut(s) 78, 220, 323
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 1 cut(s) 336
Zsp2I ATGCAT 2 cut(s) 104, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.