Prupe.1G042800_v2.0.a1

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000960
Physical Location & Seq
Forward (+)
3066730 .. 3068193
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G042800.1

Sequence Viewer

Length: 414 bp
ATGAACGTTGATCATGGTCATCGACCTCAGCAGTGGTCGCATGGTCTTTGTAGCTGTGGAGAAGATAAATCTACATGTTTCATCACATGGTGTCTCCCATGCATCACCTTTGGCCAAATCGCAGAAATTGTCGACGAAGGACAACATTCTTGCCTTTACCATGGCATAGTGTACGGGTTCTTGATGACGATTTCGTGCCACTGGGTCTACTCATGCGTGTATAGAAAGAAATTGCGCAAAAAATTTGGTCTGCCGGAGGAGCCTTGCACTGATTGTGGTGTTCATTACTGCTGTGAAGCGTTTGCCCTCTGCCAAGAACATGCTGAGCTCAAATCTAGAGGCTTCAACCCCTCCAAAGGTTGGAATGGGCCACCAACTGCTGCTCCACAGGTGCCTCCTTCCATGACCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

138

Amino Acids

15.4

Weight (kDa)

7.03

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 391
AccB7I CCANNNNNTGG 1 cut(s) 360
AccI GTMKAC 2 cut(s) 132, 207
AclI AACGTT 1 cut(s) 6
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 1 cut(s) 242
AdeI CACNNNGTG 1 cut(s) 90
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 2 cut(s) 356, 360
AflIII ACRYGT 1 cut(s) 74
AgsI TTSAA 1 cut(s) 346
AluBI AGCT 2 cut(s) 54, 328
AluI AGCT 2 cut(s) 54, 328
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 98
AoxI GGCC 2 cut(s) 112, 368
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 1 cut(s) 242
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 368
AsuHPI GGTGA 1 cut(s) 97
BalI TGGCCA 1 cut(s) 114
BanI GGYRCC 1 cut(s) 391
BanII GRGCYC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 330
BbvCI CCTCAGC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 367
BclI TGATCA 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 1 cut(s) 336
BisI GCNGC 1 cut(s) 381
BlpI GCTNAGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 2 cut(s) 261, 393
BmrI ACTGGG 1 cut(s) 211
BmsI GCATC 1 cut(s) 111
BmuI ACTGGG 1 cut(s) 211
Bpu10I CCTNAGC 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 367, 397
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 360
Bse1I ACTGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 160
BseLI CCNNNNNNNGG 2 cut(s) 356, 360
BseMII CTCAG 2 cut(s) 41, 315
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 1 cut(s) 367
BshFI GGCC 2 cut(s) 114, 370
BshNI GGYRCC 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 356, 360
BsmAI GTCTC 1 cut(s) 98
BsnI GGCC 2 cut(s) 114, 370
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 1 cut(s) 10
Bsp1720I GCTNAGC 1 cut(s) 324
Bsp19I CCATGG 1 cut(s) 160
BspANI GGCC 2 cut(s) 114, 370
BspCNI CTCAG 2 cut(s) 40, 316
BspLI GGNNCC 2 cut(s) 261, 393
BspT107I GGYRCC 1 cut(s) 391
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 160
BstDEI CTNAG 2 cut(s) 27, 324
BstDSI CCRYGG 1 cut(s) 160
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 2 cut(s) 37, 259
BstNSI RCATGY 2 cut(s) 78, 323
BstV1I GCAGC 1 cut(s) 367
BsuRI GGCC 2 cut(s) 114, 370
BtgI CCRYGG 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 3 cut(s) 38, 199, 267
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 172
CviAII CATG 9 cut(s) 14, 41, 75, 87, 99, 161, 213, 320, 403
CviJI RGCY 6 cut(s) 54, 114, 262, 328, 342, 370
CviKI_1 RGCY 6 cut(s) 54, 114, 262, 328, 342, 370
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 2 cut(s) 27, 324
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
DraIII CACNNNGTG 1 cut(s) 90
EaeI YGGCCR 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 330
Eco53kI GAGCTC 1 cut(s) 328
EcoICRI GAGCTC 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 104
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 9 cut(s) 17, 44, 78, 90, 102, 164, 216, 323, 406
FatI CATG 9 cut(s) 13, 40, 74, 86, 98, 160, 212, 319, 402
FbaI TGATCA 1 cut(s) 10
FblI GTMKAC 2 cut(s) 132, 207
Fnu4HI GCNGC 1 cut(s) 381
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 1 cut(s) 336
FspI TGCGCA 1 cut(s) 236
GlaI GCGC 1 cut(s) 236
GluI GCNGC 1 cut(s) 381
HaeIII GGCC 2 cut(s) 114, 370
HapII CCGG 1 cut(s) 254
HhaI GCGC 1 cut(s) 237
Hin1II CATG 9 cut(s) 17, 44, 78, 90, 102, 164, 216, 323, 406
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 3 cut(s) 133, 172, 208
Hpy188III TCNNGA 2 cut(s) 181, 336
Hpy8I GTNNAC 3 cut(s) 133, 172, 208
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 131, 408
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 2 cut(s) 102, 267
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 259
HpyF3I CTNAG 2 cut(s) 27, 324
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 9 cut(s) 17, 44, 78, 90, 102, 164, 216, 323, 406
HspAI GCGC 1 cut(s) 235
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 2 cut(s) 259, 388
LpnPI CCDG 3 cut(s) 187, 267, 374
Lsp1109I GCAGC 1 cut(s) 367
LweI GCATC 1 cut(s) 111
MaeI CTAG 1 cut(s) 336
MaeII ACGT 1 cut(s) 6
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 330
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 3 cut(s) 126, 230, 242
MluNI TGGCCA 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 6 cut(s) 36, 250, 317, 332, 361, 405
Mox20I TGGCCA 1 cut(s) 114
Mph1103I ATGCAT 1 cut(s) 104
MscI TGGCCA 1 cut(s) 114
Msp20I TGGCCA 1 cut(s) 114
MspI CCGG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 37, 259
NcoI CCATGG 1 cut(s) 160
NdeII GATC 1 cut(s) 10
NlaIII CATG 9 cut(s) 17, 44, 78, 90, 102, 164, 216, 323, 406
NlaIV GGNNCC 2 cut(s) 261, 393
NsbI TGCGCA 1 cut(s) 236
NsiI ATGCAT 1 cut(s) 104
NspI RCATGY 2 cut(s) 78, 323
PciI ACATGT 1 cut(s) 74
PflMI CCANNNNNTGG 1 cut(s) 360
PkrI GCNGC 1 cut(s) 382
PscI ACATGT 1 cut(s) 74
Psp124BI GAGCTC 1 cut(s) 330
Psp1406I AACGTT 1 cut(s) 6
PspN4I GGNNCC 2 cut(s) 261, 393
PspPI GGNCC 1 cut(s) 368
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SacI GAGCTC 1 cut(s) 330
SalI GTCGAC 1 cut(s) 131
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 368
SduI GDGCHC 1 cut(s) 330
SetI ASST 7 cut(s) 9, 28, 56, 110, 330, 361, 393
SfaNI GCATC 1 cut(s) 111
Sse9I AATT 3 cut(s) 126, 230, 242
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 1 cut(s) 330
StyI CCWWGG 1 cut(s) 160
TaiI ACGT 1 cut(s) 9
TaqI TCGA 2 cut(s) 22, 132
TasI AATT 3 cut(s) 126, 230, 242
TscAI CASTG 3 cut(s) 38, 206, 274
TseI GCWGC 1 cut(s) 380
TspDTI ATGAA 3 cut(s) 17, 70, 272
TspRI CASTG 3 cut(s) 38, 206, 274
Van91I CCANNNNNTGG 1 cut(s) 360
XapI RAATTY 1 cut(s) 242
XbaI TCTAGA 1 cut(s) 335
XceI RCATGY 2 cut(s) 78, 323
XmiI GTMKAC 2 cut(s) 132, 207
XspI CTAG 1 cut(s) 336
Zsp2I ATGCAT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.