Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000960

Physical Location & Seq

Genomic Coordinates Reverse (-)

32507589 .. 32508964

Gene Structure 1376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G347800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

GTCCGCGTGTCTTTTAACTGTGGAGGAGATATCTGCACATGTTGCATCGCATGTTTTCTCCCATGCATCACCTTCGGCCAAATTGCAGAAGTTGTCGACGAAGGACAAAAATCTTGCCTTTGCCATTGCATACTGTACGTGTTGTTCTCGACGTATCATTTGCAGAGGACCTACTCAAGCAAGTATAGAGGGATAATGCGCAAAAAATTTGGTCTGCCGGAGGAGCCTTGTTGGGATTGTTGTGTTCATTGTTTATGTGAACCGTGTGCCCTCAGCCAAGAATATGCTGAGCTCAAATTTAGAGGCTTCAACCCCTCCAAAGGTTGGACTGGGCCACCAACTGCTGCTCCACAGGTGCCTCCTTCCATGACCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

126

Amino Acids

13.96

Weight (kDa)

7.93

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49030 AT3G18450 AT3G18460 AT3G18470
fragaria_vesca	FvH4_3g18880 FvH4_4g04070 FvH4_5g12451 FvH4_5g12460 FvH4_5g12460
malus_domestica	MD06G1212900.v1.1 MD06G1213000.v1.1 MD13G1217200.v1.1 MD13G1217300.v1.1 MD14G1224000.v1.1 MD14G1224100.v1.1 MD16G1222500.v1.1
prunus_persica	Prupe.1G042600_v2.0.a1 Prupe.1G042800_v2.0.a1 Prupe.1G043000_v2.0.a1 Prupe.1G043200_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043500_v2.0.a1 Prupe.1G043800_v2.0.a1 Prupe.1G347800_v2.0.a1 Prupe.5G219400_v2.0.a1 Prupe.5G219500_v2.0.a1
pyrus_communis	pycom06g19040 pycom06g19060 pycom06g19070 pycom14g18540
rosa_chinensis	RchiOBHm_Chr4g0394451 RchiOBHm_Chr4g0394461 RchiOBHm_Chr7g0185011
rosa_laevigata	RLG00000004939 RLG00000004940 RLG00000009697
rosa_multiflora	Rmu_ssc0000289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269270 Rroxscaffold_3G00269280 Rroxscaffold_5G00339460 Rroxscaffold_5G00339480
rosa_rugosa	Rorug03G0366000.1 Rorug03G0366100.1 Rorug03G0366800.1 Rorug06G0466200 Rorug06G0466200
rosa_samantha	Rh4BG049800 Rh7AG076800 Rh7AG076900 Rh7BG070500 Rh7BG070600 Rh7CG072000 Rh7CG072100 Rh7DG071000 Rh7DG071100
rosa_wichuraiana	Rw0G003400 Rw0G003410 Rw4G004200 Rw7G005870 Rw7G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	355
AccB7I	CCANNNNNTGG	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	96
AccII	CGCG	1 cut(s)	6
AciI	CCGC	1 cut(s)	4
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	206, 296
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	320, 324
AflIII	ACRYGT	2 cut(s)	38, 138
AgsI	TTSAA	1 cut(s)	310
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw21I	GWGCWC	1 cut(s)	294
AoxI	GGCC	2 cut(s)	76, 332
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	2 cut(s)	206, 296
ArsI	GACNNNNNNTTYG	2 cut(s)	142, 174
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	168, 332
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	294
BbvCI	CCTCAGC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BisI	GCNGC	1 cut(s)	345
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	346
Bme18I	GGWCC	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	168, 332
BmiI	GGNNCC	2 cut(s)	225, 357
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	2 cut(s)	54, 75
BmuI	ACTGGG	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	272
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	160
BsaAI	YACGTR	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	320, 324
Bse1I	ACTGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	2 cut(s)	320, 324
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	2 cut(s)	279, 286
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	2 cut(s)	39, 236
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	331
BsgI	GTGCAG	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	2 cut(s)	78, 334
BshNI	GGYRCC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	218
BslI	CCNNNNNNNGG	2 cut(s)	320, 324
BsnI	GGCC	2 cut(s)	78, 334
Bsp1286I	GDGCHC	2 cut(s)	271, 294
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	2 cut(s)	78, 334
BspCNI	CTCAG	2 cut(s)	280, 285
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	2 cut(s)	225, 357
BspT107I	GGYRCC	1 cut(s)	355
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	334
Bst4CI	ACNGT	3 cut(s)	20, 135, 264
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	272, 288
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 223
BstNSI	RCATGY	2 cut(s)	42, 54
BstSLI	GKGCMC	1 cut(s)	271
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	78, 334
BtgZI	GCGATG	1 cut(s)	31
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	168, 332
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	4 cut(s)	39, 51, 63, 367
CviJI	RGCY	6 cut(s)	78, 226, 276, 292, 306, 334
CviKI_1	RGCY	6 cut(s)	78, 226, 276, 292, 306, 334
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	272, 288
EaeI	YGGCCR	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	168
EcoRV	GATATC	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	4 cut(s)	42, 54, 66, 370
FaiI	YATR	8 cut(s)	40, 52, 64, 131, 186, 256, 285, 368
FatI	CATG	4 cut(s)	38, 50, 62, 366
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	345
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	345
FspI	TGCGCA	1 cut(s)	200
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	1 cut(s)	345
HaeIII	GGCC	2 cut(s)	78, 334
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	4 cut(s)	42, 54, 66, 370
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	97, 260
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	2 cut(s)	97, 260
Hpy99I	CGWCG	2 cut(s)	101, 154
HpyAV	CCTTC	3 cut(s)	82, 95, 372
HpyCH4III	ACNGT	3 cut(s)	20, 135, 264
HpyCH4IV	ACGT	2 cut(s)	138, 152
HpyCH4V	TGCA	6 cut(s)	36, 45, 66, 86, 129, 163
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 223
HpyF3I	CTNAG	2 cut(s)	272, 288
HpySE526I	ACGT	2 cut(s)	138, 152
Hsp92II	CATG	4 cut(s)	42, 54, 66, 370
HspAI	GCGC	1 cut(s)	199
LmnI	GCTCC	2 cut(s)	223, 352
LpnPI	CCDG	3 cut(s)	231, 315, 338
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	2 cut(s)	54, 75
MaeII	ACGT	2 cut(s)	138, 152
MhlI	GDGCHC	2 cut(s)	271, 294
MluCI	AATT	3 cut(s)	81, 206, 296
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	8 cut(s)	17, 159, 182, 214, 281, 296, 325, 369
Mph1103I	ATGCAT	1 cut(s)	68
MseI	TTAA	1 cut(s)	15
MspI	CCGG	1 cut(s)	218
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	2 cut(s)	42, 223
NlaIII	CATG	4 cut(s)	42, 54, 66, 370
NlaIV	GGNNCC	2 cut(s)	225, 357
NsbI	TGCGCA	1 cut(s)	200
NsiI	ATGCAT	1 cut(s)	68
NspI	RCATGY	2 cut(s)	42, 54
PciI	ACATGT	1 cut(s)	38
PflMI	CCANNNNNTGG	1 cut(s)	324
PkrI	GCNGC	1 cut(s)	346
Ppu21I	YACGTR	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	168
PscI	ACATGT	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	225, 357
PspPI	GGNCC	2 cut(s)	168, 332
PspPPI	RGGWCCY	1 cut(s)	168
PsrI	GAACNNNNNNTAC	2 cut(s)	128, 160
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	294
SalI	GTCGAC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	1 cut(s)	345
Sau96I	GGNCC	2 cut(s)	168, 332
SduI	GDGCHC	2 cut(s)	271, 294
SetI	ASST	7 cut(s)	74, 141, 155, 173, 294, 325, 357
SfaNI	GCATC	2 cut(s)	54, 75
SinI	GGWCC	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
Sse9I	AATT	3 cut(s)	81, 206, 296
SsiI	CCGC	1 cut(s)	4
SstI	GAGCTC	1 cut(s)	294
TaaI	ACNGT	3 cut(s)	20, 135, 264
TaiI	ACGT	2 cut(s)	141, 155
TaqI	TCGA	2 cut(s)	96, 149
TasI	AATT	3 cut(s)	81, 206, 296
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	236
Van91I	CCANNNNNTGG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	168
XapI	RAATTY	2 cut(s)	206, 296
XceI	RCATGY	2 cut(s)	42, 54
XmiI	GTMKAC	1 cut(s)	96
Zsp2I	ATGCAT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.