Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000960

Physical Location & Seq

Genomic Coordinates Forward (+)

30512869 .. 30513358

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1224100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCTGGTGTGGTGTTTATGTTGGTCATTCATACAGCTTGTGCAACCAATACACTGATTTGCATGTTGGTCATGTTGTGCATCTTTGTGCCATGCTTGCTATCGTGCACATACCGGAAAAAGCTAAGGAACAAGTTCGATCTGCCCGAAAGCCCTGCTCCGGATTGCGTCAGTCACTTCTTATGCGAGTGGTGTGCTCTTTGCCAAGAACATAGGGAGCTCCAGCTCAGAGGCCTGGACCCTTCTTTGGGATGGGTAGGAAACATGGAGCAAATTCAGAGGATGCAGCAAAAGCGGCAAGCTGCTGTGAATCCACCAGCTACCCAAAGAATGACGGGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

115

Amino Acids

12.96

Weight (kDa)

8.42

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	12 - 73	2.3e-16	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49030 AT3G18450 AT3G18460 AT3G18470
fragaria_vesca	FvH4_3g18880 FvH4_4g04070 FvH4_5g12451 FvH4_5g12460 FvH4_5g12460
malus_domestica	MD06G1212900.v1.1 MD06G1213000.v1.1 MD13G1217200.v1.1 MD13G1217300.v1.1 MD14G1224000.v1.1 MD14G1224100.v1.1 MD16G1222500.v1.1
prunus_persica	Prupe.1G042600_v2.0.a1 Prupe.1G042800_v2.0.a1 Prupe.1G043000_v2.0.a1 Prupe.1G043200_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043500_v2.0.a1 Prupe.1G043800_v2.0.a1 Prupe.1G347800_v2.0.a1 Prupe.5G219400_v2.0.a1 Prupe.5G219500_v2.0.a1
pyrus_communis	pycom06g19040 pycom06g19060 pycom06g19070 pycom14g18540
rosa_chinensis	RchiOBHm_Chr4g0394451 RchiOBHm_Chr4g0394461 RchiOBHm_Chr7g0185011
rosa_laevigata	RLG00000004939 RLG00000004940 RLG00000009697
rosa_multiflora	Rmu_ssc0000289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269270 Rroxscaffold_3G00269280 Rroxscaffold_5G00339460 Rroxscaffold_5G00339480
rosa_rugosa	Rorug03G0366000.1 Rorug03G0366100.1 Rorug03G0366800.1 Rorug06G0466200 Rorug06G0466200
rosa_samantha	Rh4BG049800 Rh7AG076800 Rh7AG076900 Rh7BG070500 Rh7BG070600 Rh7CG072000 Rh7CG072100 Rh7DG071000 Rh7DG071100
rosa_wichuraiana	Rw0G003400 Rw0G003410 Rw4G004200 Rw7G005870 Rw7G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	273
AfiI	CCNNNNNNNGG	3 cut(s)	160, 247, 248
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	6 cut(s)	38, 124, 220, 226, 302, 320
AluI	AGCT	6 cut(s)	38, 124, 220, 226, 302, 320
Alw21I	GWGCWC	3 cut(s)	110, 199, 222
Alw44I	GTGCAC	1 cut(s)	106
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	1 cut(s)	232
ApaLI	GTGCAC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	286, 302
ApoI	RAATTY	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	3 cut(s)	110, 199, 222
BbvI	GCAGC	2 cut(s)	289, 298
BccI	CCATC	1 cut(s)	246
BcgI	CGANNNNNNTGC	4 cut(s)	137, 171, 176, 210
BciT130I	CCWGG	1 cut(s)	236
BisI	GCNGC	3 cut(s)	287, 296, 303
BlsI	GCNGC	3 cut(s)	288, 297, 304
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	2 cut(s)	90, 273
BpmI	CTGGAG	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	125
BsaWI	WCCGGW	2 cut(s)	114, 160
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 247, 248
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	236
BseGI	GGATG	2 cut(s)	257, 288
BseLI	CCNNNNNNNGG	3 cut(s)	160, 247, 248
BseMII	CTCAG	1 cut(s)	241
BseSI	GKGCMC	1 cut(s)	110
BseXI	GCAGC	2 cut(s)	289, 298
BshFI	GGCC	1 cut(s)	234
BsiHKAI	GWGCWC	3 cut(s)	110, 199, 222
BsiSI	CCGG	2 cut(s)	115, 161
BslI	CCNNNNNNNGG	3 cut(s)	160, 247, 248
BsnI	GGCC	1 cut(s)	234
Bsp1286I	GDGCHC	3 cut(s)	110, 199, 222
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	240
BspEI	TCCGGA	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	240
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	98, 300
BstDEI	CTNAG	2 cut(s)	125, 227
BstF5I	GGATG	2 cut(s)	257, 288
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 292, 295
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	110
BstV1I	GCAGC	2 cut(s)	289, 298
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	257, 288
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	98, 300
Cfr13I	GGNCC	1 cut(s)	238
CseI	GACGC	1 cut(s)	157
CviAII	CATG	4 cut(s)	64, 73, 93, 265
CviJI	RGCY	9 cut(s)	5, 38, 124, 153, 220, 226, 234, 302, 320
CviKI_1	RGCY	9 cut(s)	5, 38, 124, 153, 220, 226, 234, 302, 320
DdeI	CTNAG	2 cut(s)	125, 227
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	220
Eco147I	AGGCCT	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	222
FaeI	CATG	4 cut(s)	67, 76, 96, 268
FaiI	YATR	9 cut(s)	20, 33, 65, 74, 94, 112, 184, 213, 266
FatI	CATG	4 cut(s)	63, 72, 92, 264
Fnu4HI	GCNGC	3 cut(s)	287, 296, 303
FokI	GGATG	2 cut(s)	264, 295
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	3 cut(s)	287, 296, 303
GluI	GCNGC	3 cut(s)	287, 296, 303
GsuI	CTGGAG	1 cut(s)	206
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	2 cut(s)	115, 161
HgaI	GACGC	1 cut(s)	157
Hin1II	CATG	4 cut(s)	67, 76, 96, 268
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	2 cut(s)	115, 161
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	2 cut(s)	230, 279
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	108
HpyAV	CCTTC	1 cut(s)	252
HpyCH4V	TGCA	5 cut(s)	44, 63, 81, 108, 286
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 292, 295
HpyF3I	CTNAG	2 cut(s)	125, 227
Hsp92II	CATG	4 cut(s)	67, 76, 96, 268
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	4 cut(s)	163, 217, 225, 268
LpnPI	CCDG	7 cut(s)	128, 168, 174, 221, 236, 248, 330
Lsp1109I	GCAGC	2 cut(s)	289, 298
LweI	GCATC	2 cut(s)	90, 273
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MhlI	GDGCHC	3 cut(s)	110, 199, 222
MluCI	AATT	1 cut(s)	273
MnlI	CCTC	2 cut(s)	224, 273
MroI	TCCGGA	1 cut(s)	160
MroXI	GAANNNNTTC	1 cut(s)	134
MslI	CAYNNNNRTG	1 cut(s)	86
MspI	CCGG	2 cut(s)	115, 161
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	3 cut(s)	97, 292, 295
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	4 cut(s)	67, 76, 96, 268
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	67
PceI	AGGCCT	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	3 cut(s)	288, 297, 304
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	86
SacI	GAGCTC	1 cut(s)	222
SatI	GCNGC	3 cut(s)	287, 296, 303
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	3 cut(s)	110, 199, 222
SetI	ASST	6 cut(s)	40, 126, 222, 228, 304, 322
SfaNI	GCATC	2 cut(s)	90, 273
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	273
SseBI	AGGCCT	1 cut(s)	234
SsiI	CCGC	1 cut(s)	295
SstI	GAGCTC	1 cut(s)	222
StuI	AGGCCT	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	234
TaqI	TCGA	1 cut(s)	138
TasI	AATT	1 cut(s)	273
TauI	GCSGC	1 cut(s)	298
TfiI	GAWTC	1 cut(s)	310
TscAI	CASTG	1 cut(s)	60
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	286, 302
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	20
TspRI	CASTG	1 cut(s)	60
VneI	GTGCAC	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	273
XceI	RCATGY	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.