FvH4_4g04070

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000960
Physical Location & Seq
Forward (+)
3535535 .. 3537782
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g04070.t1

Sequence Viewer

Length: 423 bp
ATGGATTGCCTGAGGAGCCTTGTTGGGAATGTTGTGTTCATTTATGCTGCGCTACATGTGCCCTTTGCCAAGAATACGCTTAGCTCAAAGCAAGAGGCATGGAACCCTCTAAAGGTTGGATCGAAGCATCAGCTACTTCAGCTCCACACCCTCCTTCCATGTCCAAATGACCTCCAATACTTTGCAGATTCTGGCGAGTCATGCTGCCATTGGGTGTACTCATGCTTGTACAGAAACAAATTGCGCAAGAATTTTGGTTTGGCTGAGGAGCCTTGTTGTGATTGTCTTGTTAACTACTGCTGCGAGCCTTGTGCCCTTTGCCAAGAGCATGCTGAGCTCAAATCAAGAGGCTTCAACCCCTCCATAGGTTGGATTGGACCGCCAACTTCTCCTCCGGATATGCCTCCTTCCATGTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

141

Amino Acids

15.72

Weight (kDa)

6.91

Isoelectric Point (pI)

56.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 65 - 112 1.2e-16 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 245
AccB7I CCANNNNNTGG 1 cut(s) 369
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 1 cut(s) 380
AclWI GGATC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 250
AcuI CTGAAG 1 cut(s) 122
AfaI GTAC 2 cut(s) 218, 230
AfiI CCNNNNNNNGG 3 cut(s) 112, 365, 369
AflIII ACRYGT 1 cut(s) 55
AgsI TTSAA 2 cut(s) 355, 418
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 4 cut(s) 84, 133, 142, 337
AluI AGCT 4 cut(s) 84, 133, 142, 337
Alw21I GWGCWC 1 cut(s) 339
AlwI GGATC 1 cut(s) 127
AlwNI CAGNNNCTG 1 cut(s) 191
Aor13HI TCCGGA 1 cut(s) 394
ApeKI GCWGC 3 cut(s) 47, 204, 300
ApoI RAATTY 1 cut(s) 250
AspLEI GCGC 2 cut(s) 52, 246
AspS9I GGNCC 1 cut(s) 377
AvaII GGWCC 1 cut(s) 377
AxyI CCTNAGG 1 cut(s) 11
BaeGI GKGCMC 2 cut(s) 63, 316
BanII GRGCYC 1 cut(s) 339
Bbv12I GWGCWC 1 cut(s) 339
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 3 cut(s) 34, 191, 287
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BisI GCNGC 3 cut(s) 48, 205, 301
BlpI GCTNAGC 2 cut(s) 80, 333
BlsI GCNGC 3 cut(s) 49, 206, 302
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 3 cut(s) 17, 104, 270
BmsI GCATC 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 264
Bpu1102I GCTNAGC 2 cut(s) 80, 333
BsaWI WCCGGW 1 cut(s) 394
BsaXI ACNNNNNCTCC 4 cut(s) 126, 156, 376, 406
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 365, 369
Bse21I CCTNAGG 1 cut(s) 11
BseAI TCCGGA 1 cut(s) 394
BseLI CCNNNNNNNGG 3 cut(s) 112, 365, 369
BseMII CTCAG 2 cut(s) 255, 324
BseRI GAGGAG 3 cut(s) 28, 281, 381
BseSI GKGCMC 2 cut(s) 63, 316
BseXI GCAGC 3 cut(s) 34, 191, 287
BsiHKAI GWGCWC 1 cut(s) 339
BsiSI CCGG 1 cut(s) 395
BslI CCNNNNNNNGG 3 cut(s) 112, 365, 369
Bsp1286I GDGCHC 3 cut(s) 63, 316, 339
Bsp13I TCCGGA 1 cut(s) 394
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 1 cut(s) 119
Bsp1720I GCTNAGC 2 cut(s) 80, 333
BspACI CCGC 1 cut(s) 380
BspCNI CTCAG 2 cut(s) 256, 325
BspEI TCCGGA 1 cut(s) 394
BspLI GGNNCC 3 cut(s) 17, 104, 270
BspPI GGATC 1 cut(s) 127
BsrGI TGTACA 1 cut(s) 228
BssMI GATC 1 cut(s) 119
BstAUI TGTACA 1 cut(s) 228
BstC8I GCNNGC 2 cut(s) 305, 330
BstDEI CTNAG 4 cut(s) 11, 80, 264, 333
BstHHI GCGC 2 cut(s) 52, 246
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 5 cut(s) 15, 58, 139, 201, 334
BstNSI RCATGY 2 cut(s) 59, 332
BstSLI GKGCMC 2 cut(s) 63, 316
BstV1I GCAGC 3 cut(s) 34, 191, 287
Bsu36I CCTNAGG 1 cut(s) 11
Cac8I GCNNGC 2 cut(s) 305, 330
CaiI CAGNNNCTG 1 cut(s) 191
CfoI GCGC 2 cut(s) 52, 246
Cfr13I GGNCC 1 cut(s) 377
Csp6I GTAC 2 cut(s) 217, 229
CviAII CATG 7 cut(s) 56, 99, 159, 201, 222, 329, 412
CviJI RGCY 9 cut(s) 18, 84, 133, 142, 263, 271, 307, 337, 351
CviKI_1 RGCY 9 cut(s) 18, 84, 133, 142, 263, 271, 307, 337, 351
CviQI GTAC 2 cut(s) 217, 229
DdeI CTNAG 4 cut(s) 11, 80, 264, 333
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 377
Eco53kI GAGCTC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 122
Eco81I CCTNAGG 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 337
EcoT38I GRGCYC 1 cut(s) 339
FaeI CATG 7 cut(s) 59, 102, 162, 204, 225, 332, 415
FatI CATG 7 cut(s) 55, 98, 158, 200, 221, 328, 411
Fnu4HI GCNGC 3 cut(s) 48, 205, 301
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 3 cut(s) 48, 205, 301
FspI TGCGCA 1 cut(s) 245
GlaI GCGC 2 cut(s) 51, 245
GluI GCNGC 3 cut(s) 48, 205, 301
HapII CCGG 1 cut(s) 395
HhaI GCGC 2 cut(s) 52, 246
Hin1II CATG 7 cut(s) 59, 102, 162, 204, 225, 332, 415
Hin6I GCGC 2 cut(s) 50, 244
HinP1I GCGC 2 cut(s) 50, 244
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 2 cut(s) 188, 197
HpaI GTTAAC 1 cut(s) 292
HpaII CCGG 1 cut(s) 395
Hpy166II GTNNAC 2 cut(s) 217, 292
Hpy188III TCNNGA 2 cut(s) 345, 395
Hpy8I GTNNAC 2 cut(s) 217, 292
HpyAV CCTTC 2 cut(s) 164, 417
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 58, 139, 201, 334
HpyF3I CTNAG 4 cut(s) 11, 80, 264, 333
Hsp92II CATG 7 cut(s) 59, 102, 162, 204, 225, 332, 415
HspAI GCGC 2 cut(s) 50, 244
Kpn2I TCCGGA 1 cut(s) 394
KspAI GTTAAC 1 cut(s) 292
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 3 cut(s) 15, 147, 268
LpnPI CCDG 3 cut(s) 23, 177, 408
Lsp1109I GCAGC 3 cut(s) 34, 191, 287
LweI GCATC 1 cut(s) 136
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MhlI GDGCHC 3 cut(s) 63, 316, 339
MluCI AATT 2 cut(s) 239, 250
MlyI GAGTC 1 cut(s) 206
MmeI TCCRAC 2 cut(s) 97, 350
MroI TCCGGA 1 cut(s) 394
MseI TTAA 1 cut(s) 291
MspI CCGG 1 cut(s) 395
MwoI GCNNNNNNNGC 5 cut(s) 15, 58, 139, 201, 334
NdeII GATC 1 cut(s) 119
NlaIII CATG 7 cut(s) 59, 102, 162, 204, 225, 332, 415
NlaIV GGNNCC 3 cut(s) 17, 104, 270
NsbI TGCGCA 1 cut(s) 245
NspI RCATGY 2 cut(s) 59, 332
PaeI GCATGC 1 cut(s) 332
PciI ACATGT 1 cut(s) 55
PfeI GAWTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 369
PkrI GCNGC 3 cut(s) 49, 206, 302
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PscI ACATGT 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 339
PspN4I GGNNCC 3 cut(s) 17, 104, 270
PspPI GGNCC 1 cut(s) 377
PstNI CAGNNNCTG 1 cut(s) 191
RsaI GTAC 2 cut(s) 218, 230
RsaNI GTAC 2 cut(s) 217, 229
SacI GAGCTC 1 cut(s) 339
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 3 cut(s) 48, 205, 301
Sau3AI GATC 1 cut(s) 119
Sau96I GGNCC 1 cut(s) 377
SchI GAGTC 1 cut(s) 206
SduI GDGCHC 3 cut(s) 63, 316, 339
SetI ASST 7 cut(s) 86, 117, 135, 144, 174, 339, 370
SfaNI GCATC 1 cut(s) 136
SinI GGWCC 1 cut(s) 377
SphI GCATGC 1 cut(s) 332
Sse9I AATT 2 cut(s) 239, 250
SsiI CCGC 1 cut(s) 380
SstI GAGCTC 1 cut(s) 339
TaqI TCGA 1 cut(s) 122
TasI AATT 2 cut(s) 239, 250
TatI WGTACW 2 cut(s) 216, 228
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseI GCWGC 3 cut(s) 47, 204, 300
TspDTI ATGAA 1 cut(s) 28
Van91I CCANNNNNTGG 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 377
XapI RAATTY 1 cut(s) 250
XceI RCATGY 2 cut(s) 59, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.