Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000960

Physical Location & Seq

Genomic Coordinates Reverse (-)

6333048 .. 6333948

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGTCGACCAGGTAGTCAGCCGAATGAAGCACAACCACCTCCGGTTCAAGTTCAACCAACGGTTAACCGGGACAACCAGGTACATTCCCAAAACGGTGCAATTGGTCAAGCAAACATACAAACGGGCAGACCGGTCAATAACCAAACGCAAAATCTCTGGAGTTCTGATCTTTTCGATTGCATGAATGACAGTGAAAATGCCGTGATCACATGTTTAGCTCCATGCGTCACGTTAGGACAGATTGCTGAGATCGTTGACGAAGGCGCTACTCCTTGTGCGACAGGTGGGTTGTTGTATGGAATGATATTTTTCATCGGAGTGCCGTTTGTCTACTCATGCATGTTCCGGGCCAAAATGCGAAACAAATACGGGTTACCGGATGCTCCGGCTCCCGATTGGATCACTCACTTATTCTGTGAGCATTGCGCTCTTTGTCAAGAGTATCGTGAGCTCAAACACCGTGGTTTTGACCCCAATATTGGGTGGGCTGGGAATGTGCAAGCACAGCAGCCAGTAATGTCTCCTCCGACAGGTCAACGGATGATGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

184

Amino Acids

20.15

Weight (kDa)

5.45

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	54 - 151	5.7e-30	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49030 AT3G18450 AT3G18460 AT3G18470
fragaria_vesca	FvH4_3g18880 FvH4_4g04070 FvH4_5g12451 FvH4_5g12460 FvH4_5g12460
malus_domestica	MD06G1212900.v1.1 MD06G1213000.v1.1 MD13G1217200.v1.1 MD13G1217300.v1.1 MD14G1224000.v1.1 MD14G1224100.v1.1 MD16G1222500.v1.1
prunus_persica	Prupe.1G042600_v2.0.a1 Prupe.1G042800_v2.0.a1 Prupe.1G043000_v2.0.a1 Prupe.1G043200_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043500_v2.0.a1 Prupe.1G043800_v2.0.a1 Prupe.1G347800_v2.0.a1 Prupe.5G219400_v2.0.a1 Prupe.5G219500_v2.0.a1
pyrus_communis	pycom06g19040 pycom06g19060 pycom06g19070 pycom14g18540
rosa_chinensis	RchiOBHm_Chr4g0394451 RchiOBHm_Chr4g0394461 RchiOBHm_Chr7g0185011
rosa_laevigata	RLG00000004939 RLG00000004940 RLG00000009697
rosa_multiflora	Rmu_ssc0000289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269270 Rroxscaffold_3G00269280 Rroxscaffold_5G00339460 Rroxscaffold_5G00339480
rosa_rugosa	Rorug03G0366000.1 Rorug03G0366100.1 Rorug03G0366800.1 Rorug06G0466200 Rorug06G0466200
rosa_samantha	Rh4BG049800 Rh7AG076800 Rh7AG076900 Rh7BG070500 Rh7BG070600 Rh7CG072000 Rh7CG072100 Rh7DG071000 Rh7DG071100
rosa_wichuraiana	Rw0G003400 Rw0G003410 Rw4G004200 Rw7G005870 Rw7G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	15
AccI	GTMKAC	2 cut(s)	7, 333
AclWI	GGATC	1 cut(s)	410
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	3 cut(s)	482, 483, 533
AflIII	ACRYGT	1 cut(s)	212
AgeI	ACCGGT	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	50, 56
AjnI	CCWGG	2 cut(s)	10, 78
AluBI	AGCT	2 cut(s)	221, 454
AluI	AGCT	2 cut(s)	221, 454
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	528
AlwI	GGATC	1 cut(s)	410
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	1 cut(s)	511
AsiGI	ACCGGT	1 cut(s)	133
AspLEI	GCGC	2 cut(s)	269, 431
AspS9I	GGNCC	1 cut(s)	351
AsuC2I	CCSGG	2 cut(s)	71, 350
BanII	GRGCYC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	1 cut(s)	523
BccI	CCATC	1 cut(s)	541
BceAI	ACGGC	2 cut(s)	188, 310
BciT130I	CCWGG	2 cut(s)	12, 80
BclI	TGATCA	1 cut(s)	207
BcnI	CCSGG	2 cut(s)	71, 350
BcoDI	GTCTC	1 cut(s)	528
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	1 cut(s)	512
BlsI	GCNGC	1 cut(s)	513
Bme1390I	CCNGG	4 cut(s)	12, 71, 80, 350
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	393
BmrFI	CCNGG	4 cut(s)	12, 71, 80, 350
BmsI	GCATC	1 cut(s)	373
BpmI	CTGGAG	1 cut(s)	181
BpuMI	CCSGG	2 cut(s)	71, 350
BsaJI	CCNNGG	1 cut(s)	463
BsaWI	WCCGGW	3 cut(s)	43, 133, 379
Bsc4I	CCNNNNNNNGG	3 cut(s)	482, 483, 533
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	515
Bse3DI	GCAATG	1 cut(s)	424
BseBI	CCWGG	2 cut(s)	12, 80
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	2 cut(s)	388, 549
BseLI	CCNNNNNNNGG	3 cut(s)	482, 483, 533
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	1 cut(s)	515
BseRI	GAGGAG	1 cut(s)	516
BseXI	GCAGC	1 cut(s)	523
BseYI	CCCAGC	1 cut(s)	491
BshFI	GGCC	1 cut(s)	353
BshTI	ACCGGT	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	456
BsiSI	CCGG	6 cut(s)	44, 70, 134, 349, 380, 389
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	3 cut(s)	482, 483, 533
BsmAI	GTCTC	1 cut(s)	528
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	4 cut(s)	169, 207, 252, 402
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	393
BspPI	GGATC	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	515
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	4 cut(s)	169, 207, 252, 402
Bst2UI	CCWGG	2 cut(s)	12, 80
Bst4CI	ACNGT	4 cut(s)	64, 98, 194, 464
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	463
BstEII	GGTNACC	1 cut(s)	375
BstENI	CCTNNNNNAGG	1 cut(s)	531
BstF5I	GGATG	2 cut(s)	388, 549
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	2 cut(s)	269, 431
BstKTI	GATC	4 cut(s)	172, 210, 255, 405
BstMAI	GTCTC	1 cut(s)	528
BstMBI	GATC	4 cut(s)	169, 207, 252, 402
BstMWI	GCNNNNNNNGC	1 cut(s)	508
BstNI	CCWGG	2 cut(s)	12, 80
BstNSI	RCATGY	2 cut(s)	216, 346
BstPI	GGTNACC	1 cut(s)	375
BstSCI	CCNGG	4 cut(s)	10, 69, 78, 348
BstV1I	GCAGC	1 cut(s)	523
BsuRI	GGCC	1 cut(s)	353
BtgI	CCRYGG	1 cut(s)	463
BtsCI	GGATG	2 cut(s)	388, 549
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	504
CfoI	GCGC	2 cut(s)	269, 431
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	1 cut(s)	351
CseI	GACGC	1 cut(s)	217
CsiI	ACCWGGT	2 cut(s)	10, 78
Csp6I	GTAC	1 cut(s)	83
CspAI	ACCGGT	1 cut(s)	133
CspCI	CAANNNNNGTGG	2 cut(s)	445, 480
CviAII	CATG	5 cut(s)	184, 213, 225, 339, 343
CviJI	RGCY	7 cut(s)	22, 221, 353, 392, 454, 491, 514
CviKI_1	RGCY	7 cut(s)	22, 221, 353, 392, 454, 491, 514
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	4 cut(s)	171, 209, 254, 404
DpnII	GATC	4 cut(s)	169, 207, 252, 402
DrdI	GACNNNNNNGTC	1 cut(s)	15
DseDI	GACNNNNNNGTC	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	454
Eco24I	GRGCYC	1 cut(s)	456
Eco53kI	GAGCTC	1 cut(s)	454
Eco91I	GGTNACC	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	454
EcoNI	CCTNNNNNAGG	1 cut(s)	531
EcoO65I	GGTNACC	1 cut(s)	375
EcoRII	CCWGG	2 cut(s)	10, 78
EcoT22I	ATGCAT	1 cut(s)	344
EcoT38I	GRGCYC	1 cut(s)	456
FaeI	CATG	5 cut(s)	187, 216, 228, 342, 346
FaiI	YATR	7 cut(s)	119, 185, 214, 226, 300, 340, 344
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	5 cut(s)	183, 212, 224, 338, 342
FbaI	TGATCA	1 cut(s)	207
FblI	GTMKAC	2 cut(s)	7, 333
Fnu4HI	GCNGC	1 cut(s)	512
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	1 cut(s)	512
GlaI	GCGC	2 cut(s)	268, 430
GluI	GCNGC	1 cut(s)	512
GsaI	CCCAGC	1 cut(s)	495
GsuI	CTGGAG	1 cut(s)	181
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	6 cut(s)	44, 70, 134, 349, 380, 389
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	2 cut(s)	269, 431
Hin1II	CATG	5 cut(s)	187, 216, 228, 342, 346
Hin6I	GCGC	2 cut(s)	267, 429
HinP1I	GCGC	2 cut(s)	267, 429
HincII	GTYRAC	4 cut(s)	8, 67, 259, 539
HindII	GTYRAC	4 cut(s)	8, 67, 259, 539
HpaI	GTTAAC	1 cut(s)	67
HpaII	CCGG	6 cut(s)	44, 70, 134, 349, 380, 389
Hpy166II	GTNNAC	5 cut(s)	8, 67, 259, 334, 539
Hpy188I	TCNGA	3 cut(s)	169, 320, 531
Hpy188III	TCNNGA	4 cut(s)	160, 395, 440, 449
Hpy8I	GTNNAC	5 cut(s)	8, 67, 259, 334, 539
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	4 cut(s)	64, 98, 194, 464
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	4 cut(s)	101, 183, 342, 502
HpyF10VI	GCNNNNNNNGC	1 cut(s)	508
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	5 cut(s)	187, 216, 228, 342, 346
HspAI	GCGC	2 cut(s)	267, 429
Ksp22I	TGATCA	1 cut(s)	207
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	169, 207, 252, 402
LmnI	GCTCC	3 cut(s)	226, 391, 397
Lsp1109I	GCAGC	1 cut(s)	523
LweI	GCATC	1 cut(s)	373
MabI	ACCWGGT	2 cut(s)	10, 78
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	229, 375
MalI	GATC	4 cut(s)	171, 209, 254, 404
MboI	GATC	4 cut(s)	169, 207, 252, 402
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	554
MnlI	CCTC	2 cut(s)	51, 537
Mph1103I	ATGCAT	1 cut(s)	344
MseI	TTAA	1 cut(s)	66
MslI	CAYNNNNRTG	1 cut(s)	320
MspI	CCGG	6 cut(s)	44, 70, 134, 349, 380, 389
MspR9I	CCNGG	4 cut(s)	12, 71, 80, 350
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	2 cut(s)	12, 80
MwoI	GCNNNNNNNGC	1 cut(s)	508
NciI	CCSGG	2 cut(s)	71, 350
NdeII	GATC	4 cut(s)	169, 207, 252, 402
NlaIII	CATG	5 cut(s)	187, 216, 228, 342, 346
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	229
NsiI	ATGCAT	1 cut(s)	344
NspI	RCATGY	2 cut(s)	216, 346
PciI	ACATGT	1 cut(s)	212
PinAI	ACCGGT	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	513
PscI	ACATGT	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	456
Psp6I	CCWGG	2 cut(s)	10, 78
PspEI	GGTNACC	1 cut(s)	375
PspFI	CCCAGC	1 cut(s)	491
PspGI	CCWGG	2 cut(s)	10, 78
PspN4I	GGNNCC	1 cut(s)	393
PspPI	GGNCC	1 cut(s)	351
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	320
SacI	GAGCTC	1 cut(s)	456
SalI	GTCGAC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	1 cut(s)	512
Sau3AI	GATC	4 cut(s)	169, 207, 252, 402
Sau96I	GGNCC	1 cut(s)	351
ScrFI	CCNGG	4 cut(s)	12, 71, 80, 350
SduI	GDGCHC	1 cut(s)	456
SetI	ASST	8 cut(s)	16, 43, 84, 223, 236, 289, 456, 538
SexAI	ACCWGGT	2 cut(s)	10, 78
SfaNI	GCATC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	320
Sse9I	AATT	1 cut(s)	102
SspI	AATATT	1 cut(s)	481
SstI	GAGCTC	1 cut(s)	456
StyD4I	CCNGG	4 cut(s)	10, 69, 78, 348
TaaI	ACNGT	4 cut(s)	64, 98, 194, 464
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	2 cut(s)	7, 177
TasI	AATT	1 cut(s)	102
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	511
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	3 cut(s)	42, 200, 304
TspRI	CASTG	1 cut(s)	199
XagI	CCTNNNNNAGG	1 cut(s)	531
XceI	RCATGY	2 cut(s)	216, 346
XmiI	GTMKAC	2 cut(s)	7, 333
Zsp2I	ATGCAT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.