Prupe.1G043800_v2.0.a1

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000960
Physical Location & Seq
Forward (+)
3138101 .. 3138430
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G043800.1

Sequence Viewer

Length: 228 bp
ATGATGGTCCAATTCCACTGGATCTACTCATGCATCTACAGAGAGAAATTGCGTACGAAATTTGGCTTACCAGACAAACCTTGTTGTGATTGTGGTGTTCATTTCTTCTGTGACTCATGCGCCCTTTGCCAAGAGCATGCCGAGCTCAAAATTAGAGGCTTGGATCCATCCAAAGGTTGGACTGGACCACCAAATGCTGCTCCAAAGGCTTTCGCCATGTTTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

76

Amino Acids

8.6

Weight (kDa)

8.53

Isoelectric Point (pI)

22.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 177
AclWI GGATC 3 cut(s) 29, 158, 171
AcsI RAATTY 1 cut(s) 59
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 2 cut(s) 173, 177
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
Alw21I GWGCWC 1 cut(s) 147
AlwI GGATC 3 cut(s) 29, 158, 171
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 1 cut(s) 59
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 2 cut(s) 7, 185
AvaII GGWCC 2 cut(s) 7, 185
BamHI GGATCC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 175
BfmI CTRYAG 1 cut(s) 37
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme18I GGWCC 2 cut(s) 7, 185
BmgT120I GGNCC 2 cut(s) 7, 185
BmiI GGNNCC 1 cut(s) 165
BmsI GCATC 1 cut(s) 42
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 177
Bse1I ACTGG 2 cut(s) 23, 187
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 173, 177
BseNI ACTGG 2 cut(s) 23, 187
BseXI GCAGC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 147
BsiWI CGTACG 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 173, 177
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 21, 163
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 3 cut(s) 29, 158, 171
BsrI ACTGG 2 cut(s) 23, 187
BssMI GATC 2 cut(s) 21, 163
BstC8I GCNNGC 1 cut(s) 138
BstF5I GGATG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 2 cut(s) 24, 166
BstMBI GATC 2 cut(s) 21, 163
BstMWI GCNNNNNNNGC 3 cut(s) 126, 142, 206
BstNSI RCATGY 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 184
BstX2I RGATCY 2 cut(s) 21, 163
BstYI RGATCY 2 cut(s) 21, 163
BtsCI GGATG 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 138
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 7, 185
Csp6I GTAC 1 cut(s) 54
CviAII CATG 4 cut(s) 30, 117, 137, 217
CviJI RGCY 4 cut(s) 66, 145, 159, 209
CviKI_1 RGCY 4 cut(s) 66, 145, 159, 209
CviQI GTAC 1 cut(s) 54
DpnI GATC 2 cut(s) 23, 165
DpnII GATC 2 cut(s) 21, 163
Ecl136II GAGCTC 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 7, 185
Eco53kI GAGCTC 1 cut(s) 145
EcoICRI GAGCTC 1 cut(s) 145
EcoT22I ATGCAT 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 147
FaeI CATG 4 cut(s) 33, 120, 140, 220
FaiI YATR 4 cut(s) 31, 118, 138, 218
FatI CATG 4 cut(s) 29, 116, 136, 216
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 198
GlaI GCGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 198
HhaI GCGC 1 cut(s) 122
Hin1II CATG 4 cut(s) 33, 120, 140, 220
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 142, 206
Hsp92II CATG 4 cut(s) 33, 120, 140, 220
HspAI GCGC 1 cut(s) 120
Kzo9I GATC 2 cut(s) 21, 163
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 3 cut(s) 4, 84, 168
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 110
MalI GATC 2 cut(s) 23, 165
MboI GATC 2 cut(s) 21, 163
MboII GAAGA 1 cut(s) 97
MflI RGATCY 2 cut(s) 21, 163
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 4 cut(s) 11, 47, 59, 150
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 158
MnlI CCTC 1 cut(s) 149
Mph1103I ATGCAT 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 126, 142, 206
NdeII GATC 2 cut(s) 21, 163
NlaIII CATG 4 cut(s) 33, 120, 140, 220
NlaIV GGNNCC 1 cut(s) 165
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 110
NsiI ATGCAT 1 cut(s) 35
NspI RCATGY 1 cut(s) 140
PaeI GCATGC 1 cut(s) 140
Pfl23II CGTACG 1 cut(s) 53
PflMI CCANNNNNTGG 1 cut(s) 177
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
Psp124BI GAGCTC 1 cut(s) 147
PspLI CGTACG 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 2 cut(s) 7, 185
PsuI RGATCY 2 cut(s) 21, 163
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SacI GAGCTC 1 cut(s) 147
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 2 cut(s) 21, 163
Sau96I GGNCC 2 cut(s) 7, 185
SchI GAGTC 1 cut(s) 107
SduI GDGCHC 1 cut(s) 147
SetI ASST 3 cut(s) 82, 147, 178
SfaNI GCATC 1 cut(s) 42
SfcI CTRYAG 1 cut(s) 37
SinI GGWCC 2 cut(s) 7, 185
SphI GCATGC 1 cut(s) 140
Sse9I AATT 4 cut(s) 11, 47, 59, 150
SstI GAGCTC 1 cut(s) 147
TasI AATT 4 cut(s) 11, 47, 59, 150
TscAI CASTG 1 cut(s) 23
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 89
TspRI CASTG 1 cut(s) 23
Van91I CCANNNNNTGG 1 cut(s) 177
VpaK11BI GGWCC 2 cut(s) 7, 185
XapI RAATTY 1 cut(s) 59
XceI RCATGY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 174
Zsp2I ATGCAT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.