Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000960

Physical Location & Seq

Genomic Coordinates Forward (+)

20807747 .. 20808655

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1217300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAACATCTTGAATCGCATGGGCTTGAAGTCCGAATGGTCTTCTGGCCTTTTCGGTTGTGGGAATGAGTGCTCCACATGTTGCATTACATACTTCTGCCCATGCGTTACCTTTGGTCGGATTGCAGAAATTGTAGATGAAGGAAAAAGTTCATGCTGTGGGCAAGGTTGTACATACTGCGGCTTGATGTTGTTTGGGCTCCAATGGCTCTACTCATGCTTCTACAGACAGAAACTGCGCGCCAAATATAACTTACCGGACAAGCCATGTTGCGATTGTGGTGTTCATTTCTTCTGCGACTCATGTGCCCTTTGCCAAGAGCATGCGGAGCTCAAAGATAGAGGCTTGGACCCCACCAAAGGTTATTTTCGTATAACGATGAATTGTACTTATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

133

Amino Acids

14.92

Weight (kDa)

7.8

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	13 - 110	7.4e-32	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49030 AT3G18450 AT3G18460 AT3G18470
fragaria_vesca	FvH4_3g18880 FvH4_4g04070 FvH4_5g12451 FvH4_5g12460 FvH4_5g12460
malus_domestica	MD06G1212900.v1.1 MD06G1213000.v1.1 MD13G1217200.v1.1 MD13G1217300.v1.1 MD14G1224000.v1.1 MD14G1224100.v1.1 MD16G1222500.v1.1
prunus_persica	Prupe.1G042600_v2.0.a1 Prupe.1G042800_v2.0.a1 Prupe.1G043000_v2.0.a1 Prupe.1G043200_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043500_v2.0.a1 Prupe.1G043800_v2.0.a1 Prupe.1G347800_v2.0.a1 Prupe.5G219400_v2.0.a1 Prupe.5G219500_v2.0.a1
pyrus_communis	pycom06g19040 pycom06g19060 pycom06g19070 pycom14g18540
rosa_chinensis	RchiOBHm_Chr4g0394451 RchiOBHm_Chr4g0394461 RchiOBHm_Chr7g0185011
rosa_laevigata	RLG00000004939 RLG00000004940 RLG00000009697
rosa_multiflora	Rmu_ssc0000289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269270 Rroxscaffold_3G00269280 Rroxscaffold_5G00339460 Rroxscaffold_5G00339480
rosa_rugosa	Rorug03G0366000.1 Rorug03G0366100.1 Rorug03G0366800.1 Rorug06G0466200 Rorug06G0466200
rosa_samantha	Rh4BG049800 Rh7AG076800 Rh7AG076900 Rh7BG070500 Rh7BG070600 Rh7CG072000 Rh7CG072100 Rh7DG071000 Rh7DG071100
rosa_wichuraiana	Rw0G003400 Rw0G003410 Rw4G004200 Rw7G005870 Rw7G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
AccII	CGCG	1 cut(s)	240
AciI	CCGC	2 cut(s)	180, 326
AfaI	GTAC	2 cut(s)	172, 388
AfiI	CCNNNNNNNGG	2 cut(s)	117, 359
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	13, 28
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
Alw21I	GWGCWC	2 cut(s)	74, 333
AlwNI	CAGNNNCTG	1 cut(s)	235
AoxI	GGCC	1 cut(s)	46
Asp700I	GAANNNNTTC	1 cut(s)	148
AspLEI	GCGC	2 cut(s)	240, 242
AspS9I	GGNCC	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	349
BaeGI	GKGCMC	1 cut(s)	310
BanII	GRGCYC	2 cut(s)	201, 333
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	2 cut(s)	74, 333
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BfmI	CTRYAG	1 cut(s)	223
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	2 cut(s)	200, 351
BpiI	GAAGAC	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 359
BseLI	CCNNNNNNNGG	2 cut(s)	117, 359
BsePI	GCGCGC	1 cut(s)	238
BseSI	GKGCMC	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	48
BsiHKAI	GWGCWC	2 cut(s)	74, 333
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	2 cut(s)	117, 359
BsnI	GGCC	1 cut(s)	48
Bsp1286I	GDGCHC	4 cut(s)	74, 201, 310, 333
Bsp1407I	TGTACA	1 cut(s)	170
BspACI	CCGC	2 cut(s)	180, 326
BspANI	GGCC	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	200, 351
BsrGI	TGTACA	1 cut(s)	170
BssHII	GCGCGC	1 cut(s)	238
BstAUI	TGTACA	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	240, 324
BstFNI	CGCG	1 cut(s)	240
BstHHI	GCGC	2 cut(s)	240, 242
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 328
BstNSI	RCATGY	2 cut(s)	81, 326
BstSFI	CTRYAG	1 cut(s)	223
BstSLI	GKGCMC	1 cut(s)	310
BstUI	CGCG	1 cut(s)	240
BstV2I	GAAGAC	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	240, 324
CaiI	CAGNNNCTG	1 cut(s)	235
CfoI	GCGC	2 cut(s)	240, 242
Cfr13I	GGNCC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	171, 387
CviAII	CATG	8 cut(s)	19, 78, 102, 153, 216, 267, 303, 323
CviJI	RGCY	8 cut(s)	24, 48, 183, 199, 208, 265, 331, 345
CviKI_1	RGCY	8 cut(s)	24, 48, 183, 199, 208, 265, 331, 345
CviQI	GTAC	2 cut(s)	171, 387
Ecl136II	GAGCTC	1 cut(s)	331
Eco24I	GRGCYC	2 cut(s)	201, 333
Eco47I	GGWCC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	331
EcoICRI	GAGCTC	1 cut(s)	331
EcoT38I	GRGCYC	2 cut(s)	201, 333
FaeI	CATG	8 cut(s)	22, 81, 105, 156, 219, 270, 306, 326
FatI	CATG	8 cut(s)	18, 77, 101, 152, 215, 266, 302, 322
Fnu4HI	GCNGC	1 cut(s)	181
FriOI	GRGCYC	2 cut(s)	201, 333
Fsp4HI	GCNGC	1 cut(s)	181
GlaI	GCGC	2 cut(s)	239, 241
GluI	GCNGC	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	257
HhaI	GCGC	2 cut(s)	240, 242
Hin1II	CATG	8 cut(s)	22, 81, 105, 156, 219, 270, 306, 326
Hin6I	GCGC	2 cut(s)	238, 240
HinP1I	GCGC	2 cut(s)	238, 240
HinfI	GANTC	2 cut(s)	13, 299
HpaII	CCGG	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	34, 120
Hpy188III	TCNNGA	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	134
HpyCH4V	TGCA	2 cut(s)	84, 125
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 328
Hsp92II	CATG	8 cut(s)	22, 81, 105, 156, 219, 270, 306, 326
HspAI	GCGC	2 cut(s)	238, 240
LmnI	GCTCC	3 cut(s)	77, 204, 328
LpnPI	CCDG	2 cut(s)	30, 270
MaeIII	GTNAC	1 cut(s)	106
MboII	GAAGA	2 cut(s)	33, 283
MhlI	GDGCHC	4 cut(s)	74, 201, 310, 333
MluCI	AATT	2 cut(s)	129, 382
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	1 cut(s)	335
MroXI	GAANNNNTTC	1 cut(s)	148
MspI	CCGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	205, 328
NlaIII	CATG	8 cut(s)	22, 81, 105, 156, 219, 270, 306, 326
NlaIV	GGNNCC	2 cut(s)	200, 351
NspI	RCATGY	2 cut(s)	81, 326
PaeI	GCATGC	1 cut(s)	326
PauI	GCGCGC	1 cut(s)	238
PciI	ACATGT	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	182
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PscI	ACATGT	1 cut(s)	77
PsiI	TTATAA	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	200, 351
PspPI	GGNCC	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	235
PteI	GCGCGC	1 cut(s)	238
RsaI	GTAC	2 cut(s)	172, 388
RsaNI	GTAC	2 cut(s)	171, 387
SacI	GAGCTC	1 cut(s)	333
SatI	GCNGC	1 cut(s)	181
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	1 cut(s)	293
SduI	GDGCHC	4 cut(s)	74, 201, 310, 333
SetI	ASST	4 cut(s)	113, 169, 333, 364
SfcI	CTRYAG	1 cut(s)	223
SinI	GGWCC	1 cut(s)	349
SphI	GCATGC	1 cut(s)	326
Sse9I	AATT	2 cut(s)	129, 382
SsiI	CCGC	2 cut(s)	180, 326
SstI	GAGCTC	1 cut(s)	333
TasI	AATT	2 cut(s)	129, 382
TatI	WGTACW	2 cut(s)	170, 386
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	13
TspDTI	ATGAA	5 cut(s)	17, 141, 153, 275, 395
VpaK11BI	GGWCC	1 cut(s)	349
XceI	RCATGY	2 cut(s)	81, 326
XmnI	GAANNNNTTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.