Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000960

Physical Location & Seq

Genomic Coordinates Reverse (-)

6334822 .. 6335822

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAAAAGCAATGGACTTCTGGTCTTTTCAGCTGCATGGAAGACAGTGAAACTGCTTGCCTCACATGTTTCTGCCCATGCGTCACTTTCGGACGGATCGCGGACATTTCCGACGAAGGAAGGACCGGTTGTGGGAGATGTGGGGTATTTTACGGGCTAATATGTTGTGTGGTCGGCTTACCTTGCTTGTTCTCATGCACTTACCGGACCAAGATCCGAAGCAAATTCGGGTTACCGGAGTCTCCAACTTCGGATTGCGTCACTCACTTCTTTTGTGAATGTTGTGCTCTTTGCCAAGAACACCGTGAACTCAAAACCCGTGGTCTTGACCCCTCTATTGGGTGGAGTGGAAATATGCAACGGACGATGGCTCCTCCTATGAGTCAGCAGATGATGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

133

Amino Acids

14.72

Weight (kDa)

6.08

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	5 - 103	3.1e-31	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49030 AT3G18450 AT3G18460 AT3G18470
fragaria_vesca	FvH4_3g18880 FvH4_4g04070 FvH4_5g12451 FvH4_5g12460 FvH4_5g12460
malus_domestica	MD06G1212900.v1.1 MD06G1213000.v1.1 MD13G1217200.v1.1 MD13G1217300.v1.1 MD14G1224000.v1.1 MD14G1224100.v1.1 MD16G1222500.v1.1
prunus_persica	Prupe.1G042600_v2.0.a1 Prupe.1G042800_v2.0.a1 Prupe.1G043000_v2.0.a1 Prupe.1G043200_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043500_v2.0.a1 Prupe.1G043800_v2.0.a1 Prupe.1G347800_v2.0.a1 Prupe.5G219400_v2.0.a1 Prupe.5G219500_v2.0.a1
pyrus_communis	pycom06g19040 pycom06g19060 pycom06g19070 pycom14g18540
rosa_chinensis	RchiOBHm_Chr4g0394451 RchiOBHm_Chr4g0394461 RchiOBHm_Chr7g0185011
rosa_laevigata	RLG00000004939 RLG00000004940 RLG00000009697
rosa_multiflora	Rmu_ssc0000289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269270 Rroxscaffold_3G00269280 Rroxscaffold_5G00339460 Rroxscaffold_5G00339480
rosa_rugosa	Rorug03G0366000.1 Rorug03G0366100.1 Rorug03G0366800.1 Rorug06G0466200 Rorug06G0466200
rosa_samantha	Rh4BG049800 Rh7AG076800 Rh7AG076900 Rh7BG070500 Rh7BG070600 Rh7CG072000 Rh7CG072100 Rh7DG071000 Rh7DG071100
rosa_wichuraiana	Rw0G003400 Rw0G003410 Rw4G004200 Rw7G005870 Rw7G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	101
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	2 cut(s)	104, 208
AcsI	RAATTY	1 cut(s)	224
AfiI	CCNNNNNNNGG	3 cut(s)	132, 338, 339
AflIII	ACRYGT	1 cut(s)	65
AgeI	ACCGGT	1 cut(s)	125
AhdI	GACNNNNNGTC	1 cut(s)	21
AluBI	AGCT	1 cut(s)	33
AluI	AGCT	1 cut(s)	33
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	104, 208
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	1 cut(s)	224
AsiGI	ACCGGT	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	123, 207
AvaII	GGWCC	2 cut(s)	123, 207
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	2 cut(s)	361, 388
BcoDI	GTCTC	1 cut(s)	246
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
Bme18I	GGWCC	2 cut(s)	123, 207
BmeRI	GACNNNNNGTC	1 cut(s)	21
BmgT120I	GGNCC	2 cut(s)	123, 207
BmiI	GGNNCC	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	319
BsaWI	WCCGGW	3 cut(s)	125, 204, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	355, 385
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 338, 339
Bse118I	RCCGGY	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	319
BseLI	CCNNNNNNNGG	3 cut(s)	132, 338, 339
BseMI	GCAATG	1 cut(s)	17
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	101
BshTI	ACCGGT	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	3 cut(s)	126, 205, 236
BslI	CCNNNNNNNGG	3 cut(s)	132, 338, 339
BsmAI	GTCTC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	96, 213
BspACI	CCGC	1 cut(s)	101
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	372
BspPI	GGATC	2 cut(s)	104, 208
BsrDI	GCAATG	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	2 cut(s)	96, 213
Bst4CI	ACNGT	2 cut(s)	47, 305
BstC8I	GCNNGC	1 cut(s)	58
BstDSI	CCRYGG	1 cut(s)	319
BstEII	GGTNACC	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	2 cut(s)	99, 216
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	2 cut(s)	96, 213
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstNSI	RCATGY	1 cut(s)	69
BstPI	GGTNACC	1 cut(s)	231
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	1 cut(s)	20
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	2 cut(s)	123, 207
CseI	GACGC	2 cut(s)	70, 247
CspAI	ACCGGT	1 cut(s)	125
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	4 cut(s)	37, 66, 78, 195
CviJI	RGCY	4 cut(s)	33, 157, 177, 371
CviKI_1	RGCY	4 cut(s)	33, 157, 177, 371
DpnI	GATC	2 cut(s)	98, 215
DpnII	GATC	2 cut(s)	96, 213
DriI	GACNNNNNGTC	1 cut(s)	21
Eam1105I	GACNNNNNGTC	1 cut(s)	21
Eco47I	GGWCC	2 cut(s)	123, 207
Eco91I	GGTNACC	1 cut(s)	231
EcoO65I	GGTNACC	1 cut(s)	231
FaeI	CATG	4 cut(s)	40, 69, 81, 198
FaiI	YATR	7 cut(s)	38, 67, 79, 163, 196, 356, 380
FatI	CATG	4 cut(s)	36, 65, 77, 194
Fnu4HI	GCNGC	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	34
HapII	CCGG	3 cut(s)	126, 205, 236
HgaI	GACGC	2 cut(s)	70, 247
Hin1II	CATG	4 cut(s)	40, 69, 81, 198
HinfI	GANTC	2 cut(s)	239, 382
HpaII	CCGG	3 cut(s)	126, 205, 236
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	4 cut(s)	92, 112, 218, 253
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	308
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	2 cut(s)	110, 114
HpyCH4III	ACNGT	2 cut(s)	47, 305
HpyCH4V	TGCA	3 cut(s)	36, 198, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	40, 69, 81, 198
Kzo9I	GATC	2 cut(s)	96, 213
LmnI	GCTCC	1 cut(s)	376
LpnPI	CCDG	4 cut(s)	6, 139, 218, 249
Lsp1109I	GCAGC	1 cut(s)	20
MaeIII	GTNAC	3 cut(s)	82, 231, 259
MalI	GATC	2 cut(s)	98, 215
MboI	GATC	2 cut(s)	96, 213
MboII	GAAGA	1 cut(s)	53
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	1 cut(s)	224
MlyI	GAGTC	2 cut(s)	248, 391
MmeI	TCCRAC	2 cut(s)	135, 269
MnlI	CCTC	3 cut(s)	71, 343, 384
MspA1I	CMGCKG	1 cut(s)	33
MspI	CCGG	3 cut(s)	126, 205, 236
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	183
NdeII	GATC	2 cut(s)	96, 213
NlaIII	CATG	4 cut(s)	40, 69, 81, 198
NlaIV	GGNNCC	1 cut(s)	372
NmuCI	GTSAC	2 cut(s)	82, 259
NspI	RCATGY	1 cut(s)	69
PciI	ACATGT	1 cut(s)	65
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	35
PleI	GAGTC	2 cut(s)	247, 390
PpsI	GAGTC	2 cut(s)	247, 390
PscI	ACATGT	1 cut(s)	65
PspEI	GGTNACC	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	2 cut(s)	123, 207
PsuI	RGATCY	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	33
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	2 cut(s)	96, 213
Sau96I	GGNCC	2 cut(s)	123, 207
SchI	GAGTC	2 cut(s)	248, 391
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	2 cut(s)	35, 184
SinI	GGWCC	2 cut(s)	123, 207
Sse9I	AATT	1 cut(s)	224
SsiI	CCGC	1 cut(s)	101
TaaI	ACNGT	2 cut(s)	47, 305
TasI	AATT	1 cut(s)	224
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	2 cut(s)	82, 259
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	2 cut(s)	82, 259
TspGWI	ACGGA	2 cut(s)	109, 376
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	2 cut(s)	123, 207
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.