MD13G1217200.v1.1

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000960
Physical Location & Seq
Forward (+)
20791914 .. 20793402
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1217200.v1.1.491

Sequence Viewer

Length: 462 bp
ATGAATGTTGATTATGGCCACCAACCTCAGCAGCCCAGGTGGTCCGGTGGCCTTTGTAGCTGCGGAGAAGATGTTGTTACATGTTGCATAGCATGTTTTCTACCATGCATCACCTTCGGCCAAATTGCTGAAACTGTGGATGAAGGACAAAGCTCTTGCGTAAACCAAGCCATAGTGTACGGGTTGTTGTGGACGATTCAGTGCCATTGGTTCTACTCGTGCATATACAGAGAGAAATTACGCCAAAAATATGGTTTGCCTGAGGAGCCTTGTTGTGATTGTTGTGTTCATTTCTGCTGCGAATCATGTGCTCTTTGCCAAGAACATGCTGAGCTCAAATATAGAGGATTCGATCCCGCCGCAGGTTCTATATCTAATACTAGACGAATATATATATATATATATATATATATATGTATGTATGTATGTATGTATATGTATATGTCATCGCCAAGCACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

154

Amino Acids

17.52

Weight (kDa)

5.23

Isoelectric Point (pI)

68.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 14 - 111 1.9e-31 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 353
AciI CCGC 3 cut(s) 63, 357, 360
AclWI GGATC 1 cut(s) 347
AcoI YGGCCR 2 cut(s) 16, 118
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 362
AflIII ACRYGT 1 cut(s) 80
AjnI CCWGG 1 cut(s) 35
AluBI AGCT 3 cut(s) 60, 153, 334
AluI AGCT 3 cut(s) 60, 153, 334
Alw21I GWGCWC 2 cut(s) 313, 336
AlwI GGATC 1 cut(s) 347
AoxI GGCC 3 cut(s) 16, 49, 118
ApeKI GCWGC 3 cut(s) 31, 60, 297
AspS9I GGNCC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 42
AxyI CCTNAGG 1 cut(s) 261
BalI TGGCCA 1 cut(s) 18
BanII GRGCYC 1 cut(s) 336
BauI CACGAG 1 cut(s) 217
Bbv12I GWGCWC 2 cut(s) 313, 336
BbvCI CCTCAGC 1 cut(s) 27
BbvI GCAGC 3 cut(s) 43, 47, 284
BcgI CGANNNNNNTGC 4 cut(s) 97, 131, 290, 324
BciT130I CCWGG 1 cut(s) 37
BfaI CTAG 1 cut(s) 381
BfuAI ACCTGC 1 cut(s) 353
BisI GCNGC 4 cut(s) 32, 61, 298, 360
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 4 cut(s) 33, 62, 299, 361
Bme1390I CCNGG 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 42
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 37
BmsI GCATC 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 35
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 362
Bse21I CCTNAGG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 362
BseMII CTCAG 3 cut(s) 41, 252, 321
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 3 cut(s) 43, 47, 284
BshFI GGCC 3 cut(s) 18, 51, 120
BsiHKAI GWGCWC 2 cut(s) 313, 336
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 362
BsnI GGCC 3 cut(s) 18, 51, 120
Bsp1286I GDGCHC 2 cut(s) 313, 336
Bsp143I GATC 1 cut(s) 352
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 3 cut(s) 63, 357, 360
BspANI GGCC 3 cut(s) 18, 51, 120
BspCNI CTCAG 3 cut(s) 40, 253, 322
BspLI GGNNCC 1 cut(s) 267
BspMI ACCTGC 1 cut(s) 353
BspPI GGATC 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 1 cut(s) 352
BssSI CACGAG 1 cut(s) 217
Bst2BI CACGAG 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 136
BstBAI YACGTR 1 cut(s) 459
BstDEI CTNAG 3 cut(s) 27, 261, 330
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 1 cut(s) 355
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 2 cut(s) 57, 265
BstNI CCWGG 1 cut(s) 37
BstNSI RCATGY 3 cut(s) 84, 96, 329
BstSCI CCNGG 1 cut(s) 35
BstV1I GCAGC 3 cut(s) 43, 47, 284
BstXI CCANNNNNNTGG 1 cut(s) 251
Bsu36I CCTNAGG 1 cut(s) 261
BsuRI GGCC 3 cut(s) 18, 51, 120
BtgZI GCGATG 1 cut(s) 432
BtsCI GGATG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 206
BveI ACCTGC 1 cut(s) 353
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 178
CviAII CATG 5 cut(s) 81, 93, 105, 306, 326
CviJI RGCY 9 cut(s) 18, 34, 51, 60, 120, 153, 170, 268, 334
CviKI_1 RGCY 9 cut(s) 18, 34, 51, 60, 120, 153, 170, 268, 334
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 3 cut(s) 27, 261, 330
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
EaeI YGGCCR 2 cut(s) 16, 118
Ecl136II GAGCTC 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 334
Eco81I CCTNAGG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 35
EcoT22I ATGCAT 1 cut(s) 110
EcoT38I GRGCYC 1 cut(s) 336
FaeI CATG 5 cut(s) 84, 96, 108, 309, 329
FatI CATG 5 cut(s) 80, 92, 104, 305, 325
FauI CCCGC 1 cut(s) 364
Fnu4HI GCNGC 4 cut(s) 32, 61, 298, 360
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 4 cut(s) 32, 61, 298, 360
FspBI CTAG 1 cut(s) 381
GluI GCNGC 4 cut(s) 32, 61, 298, 360
HaeIII GGCC 3 cut(s) 18, 51, 120
HapII CCGG 1 cut(s) 45
Hin1II CATG 5 cut(s) 84, 96, 108, 309, 329
HinfI GANTC 3 cut(s) 196, 302, 348
HpaII CCGG 1 cut(s) 45
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 3 cut(s) 163, 178, 192
Hpy8I GTNNAC 3 cut(s) 163, 178, 192
HpyAV CCTTC 2 cut(s) 124, 137
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 3 cut(s) 87, 108, 222
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 265
HpyF3I CTNAG 3 cut(s) 27, 261, 330
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 5 cut(s) 84, 96, 108, 309, 329
Kzo9I GATC 1 cut(s) 352
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 5 cut(s) 22, 49, 58, 273, 348
Lsp1109I GCAGC 3 cut(s) 43, 47, 284
LweI GCATC 1 cut(s) 117
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 1 cut(s) 80
MhlI GDGCHC 2 cut(s) 313, 336
MlsI TGGCCA 1 cut(s) 18
MluCI AATT 2 cut(s) 123, 236
MluNI TGGCCA 1 cut(s) 18
MnlI CCTC 3 cut(s) 36, 256, 338
Mox20I TGGCCA 1 cut(s) 18
Mph1103I ATGCAT 1 cut(s) 110
MscI TGGCCA 1 cut(s) 18
Msp20I TGGCCA 1 cut(s) 18
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 37
MvaI CCWGG 1 cut(s) 37
MwoI GCNNNNNNNGC 2 cut(s) 57, 265
NdeII GATC 1 cut(s) 352
NlaIII CATG 5 cut(s) 84, 96, 108, 309, 329
NlaIV GGNNCC 1 cut(s) 267
NsiI ATGCAT 1 cut(s) 110
NspI RCATGY 3 cut(s) 84, 96, 329
PciI ACATGT 1 cut(s) 80
PcsI WCGNNNNNNNCGW 1 cut(s) 455
PfeI GAWTC 3 cut(s) 196, 302, 348
PkrI GCNGC 4 cut(s) 33, 62, 299, 361
Ppu21I YACGTR 1 cut(s) 459
PscI ACATGT 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 35
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 42
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SacI GAGCTC 1 cut(s) 336
SatI GCNGC 4 cut(s) 32, 61, 298, 360
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 37
SduI GDGCHC 2 cut(s) 313, 336
SetI ASST 8 cut(s) 28, 41, 62, 116, 155, 336, 367, 461
SfaNI GCATC 1 cut(s) 117
SinI GGWCC 1 cut(s) 42
Sse9I AATT 2 cut(s) 123, 236
SsiI CCGC 3 cut(s) 63, 357, 360
SspMI CTAG 1 cut(s) 381
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 35
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 1 cut(s) 461
TaqI TCGA 1 cut(s) 351
TasI AATT 2 cut(s) 123, 236
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 3 cut(s) 196, 302, 348
TscAI CASTG 1 cut(s) 206
TseI GCWGC 3 cut(s) 31, 60, 297
TspDTI ATGAA 3 cut(s) 17, 156, 278
TspRI CASTG 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 42
XceI RCATGY 3 cut(s) 84, 96, 329
XspI CTAG 1 cut(s) 381
Zsp2I ATGCAT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.