Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000960

Physical Location & Seq

Genomic Coordinates Forward (+)

22565444 .. 22565931

Gene Structure 488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCTTGTAGGTTTTCTCGTGATAACATGTGCGAGCAGCGGACTGTTCTACGGGTTGATTGCAGCCTTCTGCGCAGCAAATACAAATCTAATCGAGTCCCCTGAACCCGATTGGGTCACCCATTTCTTCTGTGAGCCCTGCGCTATTTGCCAAGATTACAGGGAGCTCCAGTTCAGAGGGATTGACCCTTCAATCGGATGGATAGGAAATGTGCAAACGAATCCAAGGTTACATCAGCAGCAGCCACAGTTTAATATGATGACGCCTCTAGGGAACCAGAATATGAATCAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

99

Amino Acids

11.07

Weight (kDa)

4.69

Isoelectric Point (pI)

26.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49030 AT3G18450 AT3G18460 AT3G18470
fragaria_vesca	FvH4_3g18880 FvH4_4g04070 FvH4_5g12451 FvH4_5g12460 FvH4_5g12460
malus_domestica	MD06G1212900.v1.1 MD06G1213000.v1.1 MD13G1217200.v1.1 MD13G1217300.v1.1 MD14G1224000.v1.1 MD14G1224100.v1.1 MD16G1222500.v1.1
prunus_persica	Prupe.1G042600_v2.0.a1 Prupe.1G042800_v2.0.a1 Prupe.1G043000_v2.0.a1 Prupe.1G043200_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043500_v2.0.a1 Prupe.1G043800_v2.0.a1 Prupe.1G347800_v2.0.a1 Prupe.5G219400_v2.0.a1 Prupe.5G219500_v2.0.a1
pyrus_communis	pycom06g19040 pycom06g19060 pycom06g19070 pycom14g18540
rosa_chinensis	RchiOBHm_Chr4g0394451 RchiOBHm_Chr4g0394461 RchiOBHm_Chr7g0185011
rosa_laevigata	RLG00000004939 RLG00000004940 RLG00000009697
rosa_multiflora	Rmu_ssc0000289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269270 Rroxscaffold_3G00269280 Rroxscaffold_5G00339460 Rroxscaffold_5G00339480
rosa_rugosa	Rorug03G0366000.1 Rorug03G0366100.1 Rorug03G0366800.1 Rorug06G0466200 Rorug06G0466200
rosa_samantha	Rh4BG049800 Rh7AG076800 Rh7AG076900 Rh7BG070500 Rh7BG070600 Rh7CG072000 Rh7CG072100 Rh7DG071000 Rh7DG071100
rosa_wichuraiana	Rw0G003400 Rw0G003410 Rw4G004200 Rw7G005870 Rw7G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	73
AciI	CCGC	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	192
AloI	GAACNNNNNNTCC	2 cut(s)	155, 187
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw21I	GWGCWC	1 cut(s)	168
ApeKI	GCWGC	5 cut(s)	36, 62, 74, 238, 241
AspLEI	GCGC	2 cut(s)	74, 143
AsuHPI	GGTGA	1 cut(s)	109
BanII	GRGCYC	2 cut(s)	138, 168
BauI	CACGAG	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	5 cut(s)	48, 74, 86, 250, 253
BccI	CCATC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	269
BisI	GCNGC	5 cut(s)	37, 63, 75, 239, 242
BlsI	GCNGC	5 cut(s)	38, 64, 76, 240, 243
BmiI	GGNNCC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseNI	ACTGG	1 cut(s)	169
BseXI	GCAGC	5 cut(s)	48, 74, 86, 250, 253
BsiHKAI	GWGCWC	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	82
Bsp1286I	GDGCHC	2 cut(s)	138, 168
BspACI	CCGC	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	224
BssNI	GRCGYC	1 cut(s)	263
BssSI	CACGAG	1 cut(s)	17
BssT1I	CCWWGG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	45, 249
BstACI	GRCGYC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	34
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	74, 143
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 147
BstNSI	RCATGY	1 cut(s)	30
BstPI	GGTNACC	1 cut(s)	115
BstV1I	GCAGC	5 cut(s)	48, 74, 86, 250, 253
BtsCI	GGATG	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	2 cut(s)	74, 143
CseI	GACGC	1 cut(s)	271
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	4 cut(s)	65, 136, 166, 244
CviKI_1	RGCY	4 cut(s)	65, 136, 166, 244
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	224
Eco24I	GRGCYC	2 cut(s)	138, 168
Eco53kI	GAGCTC	1 cut(s)	166
Eco91I	GGTNACC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	166
EcoO65I	GGTNACC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	224
EcoT38I	GRGCYC	2 cut(s)	138, 168
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	1 cut(s)	30
FaiI	YATR	3 cut(s)	28, 257, 284
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	1 cut(s)	26
Fnu4HI	GCNGC	5 cut(s)	37, 63, 75, 239, 242
FokI	GGATG	1 cut(s)	210
FriOI	GRGCYC	2 cut(s)	138, 168
Fsp4HI	GCNGC	5 cut(s)	37, 63, 75, 239, 242
FspBI	CTAG	1 cut(s)	269
FspI	TGCGCA	1 cut(s)	73
GlaI	GCGC	2 cut(s)	73, 142
GluI	GCNGC	5 cut(s)	37, 63, 75, 239, 242
GsuI	CTGGAG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	271
HhaI	GCGC	2 cut(s)	74, 143
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	30
Hin6I	GCGC	2 cut(s)	72, 141
HinP1I	GCGC	2 cut(s)	72, 141
HinfI	GANTC	3 cut(s)	95, 220, 286
HphI	GGTGA	1 cut(s)	109
Hpy188I	TCNGA	2 cut(s)	176, 197
Hpy188III	TCNNGA	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	76, 198
HpyCH4III	ACNGT	2 cut(s)	45, 249
HpyCH4V	TGCA	2 cut(s)	62, 214
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 147
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	1 cut(s)	30
HspAI	GCGC	2 cut(s)	72, 141
LmnI	GCTCC	2 cut(s)	163, 171
LpnPI	CCDG	5 cut(s)	114, 145, 151, 182, 290
Lsp1109I	GCAGC	5 cut(s)	48, 74, 86, 250, 253
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	2 cut(s)	115, 228
MboII	GAAGA	1 cut(s)	118
MhlI	GDGCHC	2 cut(s)	138, 168
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	2 cut(s)	170, 276
MseI	TTAA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	71, 147
NlaIII	CATG	1 cut(s)	30
NlaIV	GGNNCC	1 cut(s)	275
NmuCI	GTSAC	1 cut(s)	115
NsbI	TGCGCA	1 cut(s)	73
NspI	RCATGY	1 cut(s)	30
PciI	ACATGT	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	220, 286
PkrI	GCNGC	5 cut(s)	38, 64, 76, 240, 243
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PscI	ACATGT	1 cut(s)	26
Psp124BI	GAGCTC	1 cut(s)	168
PspEI	GGTNACC	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	275
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	5 cut(s)	37, 63, 75, 239, 242
SchI	GAGTC	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	138, 168
SetI	ASST	3 cut(s)	13, 168, 230
SsiI	CCGC	1 cut(s)	39
SspI	AATATT	1 cut(s)	293
SspMI	CTAG	1 cut(s)	269
SstI	GAGCTC	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	45, 249
TaqI	TCGA	1 cut(s)	93
TfiI	GAWTC	2 cut(s)	220, 286
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	5 cut(s)	36, 62, 74, 238, 241
Tsp45I	GTSAC	1 cut(s)	115
XceI	RCATGY	1 cut(s)	30
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.