Rroxscaffold_5G00339460

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000960
Physical Location & Seq
Forward (+)
7918801 .. 7928932
10132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00339460.1

Sequence Viewer

Length: 432 bp
ATGGTCCGTGGGCTTTTGTCATTGCTACAAAGATATCCCTACATGGAATTGAAGCTGCGCAAAAAGCTCTGTTTACCGGACCAGCCTTGTTGTGATTGTTTCGTGCATTTCAGCTGCGAATTATGTGCCCTTTGTCAAGAGCACGCCGAGCTCAAAGCTAGAGGTTTTGATCCCTCCAAAGGATCAAAGTTATTAGTGGCAGCTTTAATTTGCCTCAAGGTGAAAAAACCGGTCCGCAGATCCGGTCCTCTCAAAACTGTCCAAAGAACCAGGTTGTCAAGAAATACTAATCTTGTCGAGAAACTTATAACTCAAGTAGAGCATGCAGGTTGTAAAAAGAGGAACTTAGTCACTTACAGCCCATCTAGTAAGATTTTGTTGCTGATCTTTGCTAAGTTGTGGCTTGCTTCGTTGATAAATCTCGGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

143

Amino Acids

16.18

Weight (kDa)

9.82

Isoelectric Point (pI)

36.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 18 - 50 2.6e-07 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 308
Acc16I TGCGCA 1 cut(s) 59
Acc36I ACCTGC 1 cut(s) 317
AciI CCGC 1 cut(s) 235
AclWI GGATC 3 cut(s) 164, 190, 234
AfiI CCNNNNNNNGG 1 cut(s) 179
AgeI ACCGGT 1 cut(s) 229
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 6 cut(s) 55, 67, 114, 151, 158, 203
AluI AGCT 6 cut(s) 55, 67, 114, 151, 158, 203
Alw21I GWGCWC 2 cut(s) 144, 153
AlwI GGATC 3 cut(s) 164, 190, 234
Ama87I CYCGRG 1 cut(s) 422
ApeKI GCWGC 3 cut(s) 55, 114, 200
AsiGI ACCGGT 1 cut(s) 229
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 4 cut(s) 4, 79, 232, 245
AsuHPI GGTGA 1 cut(s) 232
AvaI CYCGRG 1 cut(s) 422
AvaII GGWCC 4 cut(s) 4, 79, 232, 245
BaeGI GKGCMC 1 cut(s) 130
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 2 cut(s) 144, 153
BbvI GCAGC 3 cut(s) 42, 101, 212
BccI CCATC 1 cut(s) 370
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 1 cut(s) 271
BfaI CTAG 2 cut(s) 159, 366
BfuAI ACCTGC 1 cut(s) 317
BisI GCNGC 3 cut(s) 56, 115, 201
BlsI GCNGC 3 cut(s) 57, 116, 202
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 4 cut(s) 4, 79, 232, 245
BmeT110I CYCGRG 1 cut(s) 422
BmgT120I GGNCC 4 cut(s) 4, 79, 232, 245
BmrFI CCNGG 1 cut(s) 271
BpuEI CTTGAG 2 cut(s) 200, 297
BsaJI CCNNGG 1 cut(s) 7
BsaWI WCCGGW 3 cut(s) 76, 229, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 229
Bse3DI GCAATG 1 cut(s) 20
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 7
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMI GCAATG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 3 cut(s) 42, 101, 212
BshTI ACCGGT 1 cut(s) 229
BsiHKAI GWGCWC 2 cut(s) 144, 153
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 3 cut(s) 77, 230, 243
BslI CCNNNNNNNGG 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 422
Bsp1286I GDGCHC 3 cut(s) 130, 144, 153
Bsp143I GATC 4 cut(s) 169, 182, 239, 384
BspACI CCGC 1 cut(s) 235
BspMI ACCTGC 1 cut(s) 317
BspPI GGATC 3 cut(s) 164, 190, 234
BsrDI GCAATG 1 cut(s) 20
BsrFI RCCGGY 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 4 cut(s) 169, 182, 239, 384
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 1 cut(s) 259
BstC8I GCNNGC 3 cut(s) 144, 324, 405
BstDEI CTNAG 2 cut(s) 346, 393
BstDSI CCRYGG 1 cut(s) 7
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 4 cut(s) 172, 185, 242, 387
BstMBI GATC 4 cut(s) 169, 182, 239, 384
BstMWI GCNNNNNNNGC 2 cut(s) 64, 148
BstNI CCWGG 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 269
BstSLI GKGCMC 1 cut(s) 130
BstV1I GCAGC 3 cut(s) 42, 101, 212
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BtgI CCRYGG 1 cut(s) 7
BveI ACCTGC 1 cut(s) 317
Cac8I GCNNGC 3 cut(s) 144, 324, 405
CfoI GCGC 1 cut(s) 60
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 4 cut(s) 4, 79, 232, 245
CpoI CGGWCCG 1 cut(s) 232
CsiI ACCWGGT 1 cut(s) 269
CspAI ACCGGT 1 cut(s) 229
CspI CGGWCCG 1 cut(s) 232
CviAII CATG 2 cut(s) 43, 323
DdeI CTNAG 2 cut(s) 346, 393
DpnI GATC 4 cut(s) 171, 184, 241, 386
DpnII GATC 4 cut(s) 169, 182, 239, 384
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 153
Eco32I GATATC 1 cut(s) 35
Eco47I GGWCC 4 cut(s) 4, 79, 232, 245
Eco53kI GAGCTC 1 cut(s) 151
Eco88I CYCGRG 1 cut(s) 422
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 269
EcoRV GATATC 1 cut(s) 35
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 2 cut(s) 46, 326
FaiI YATR 5 cut(s) 44, 124, 308, 324, 430
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FatI CATG 2 cut(s) 42, 322
Fnu4HI GCNGC 3 cut(s) 56, 115, 201
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 3 cut(s) 56, 115, 201
FspBI CTAG 2 cut(s) 159, 366
FspI TGCGCA 1 cut(s) 59
GlaI GCGC 1 cut(s) 59
GluI GCNGC 3 cut(s) 56, 115, 201
HapII CCGG 3 cut(s) 77, 230, 243
HhaI GCGC 1 cut(s) 60
Hin1II CATG 2 cut(s) 46, 326
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HpaII CCGG 3 cut(s) 77, 230, 243
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 74
Hpy188III TCNNGA 4 cut(s) 137, 279, 298, 424
Hpy8I GTNNAC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 2 cut(s) 106, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 148
HpyF3I CTNAG 2 cut(s) 346, 393
Hsp92II CATG 2 cut(s) 46, 326
HspAI GCGC 1 cut(s) 58
Kzo9I GATC 4 cut(s) 169, 182, 239, 384
LpnPI CCDG 7 cut(s) 90, 95, 243, 256, 256, 283, 312
Lsp1109I GCAGC 3 cut(s) 42, 101, 212
MabI ACCWGGT 1 cut(s) 269
MaeI CTAG 2 cut(s) 159, 366
MaeIII GTNAC 1 cut(s) 349
MalI GATC 4 cut(s) 171, 184, 241, 386
MboI GATC 4 cut(s) 169, 182, 239, 384
MflI RGATCY 1 cut(s) 239
MhlI GDGCHC 3 cut(s) 130, 144, 153
MluCI AATT 3 cut(s) 47, 119, 207
MnlI CCTC 5 cut(s) 155, 184, 224, 258, 333
MseI TTAA 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 3 cut(s) 77, 230, 243
MspR9I CCNGG 1 cut(s) 271
MvaI CCWGG 1 cut(s) 271
MwoI GCNNNNNNNGC 2 cut(s) 64, 148
NdeII GATC 4 cut(s) 169, 182, 239, 384
NlaIII CATG 2 cut(s) 46, 326
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 349
NsbI TGCGCA 1 cut(s) 59
NspI RCATGY 1 cut(s) 326
PaeI GCATGC 1 cut(s) 326
PinAI ACCGGT 1 cut(s) 229
PkrI GCNGC 3 cut(s) 57, 116, 202
PsiI TTATAA 1 cut(s) 308
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PspPI GGNCC 4 cut(s) 4, 79, 232, 245
PsuI RGATCY 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 114
Rsr2I CGGWCCG 1 cut(s) 232
RsrII CGGWCCG 1 cut(s) 232
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 3 cut(s) 56, 115, 201
Sau3AI GATC 4 cut(s) 169, 182, 239, 384
Sau96I GGNCC 4 cut(s) 4, 79, 232, 245
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 3 cut(s) 130, 144, 153
SexAI ACCWGGT 1 cut(s) 269
SinI GGWCC 4 cut(s) 4, 79, 232, 245
SmlI CTYRAG 2 cut(s) 215, 312
SmoI CTYRAG 2 cut(s) 215, 312
SphI GCATGC 1 cut(s) 326
Sse9I AATT 3 cut(s) 47, 119, 207
SsiI CCGC 1 cut(s) 235
SspMI CTAG 2 cut(s) 159, 366
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 1 cut(s) 297
TasI AATT 3 cut(s) 47, 119, 207
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 3 cut(s) 55, 114, 200
Tsp45I GTSAC 1 cut(s) 349
VpaK11BI GGWCC 4 cut(s) 4, 79, 232, 245
XceI RCATGY 1 cut(s) 326
XspI CTAG 2 cut(s) 159, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.