Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000960

Physical Location & Seq

Genomic Coordinates Reverse (-)

6331033 .. 6332259

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGTCGACCAGTTGGCCAAACGAATCAGGCACAACCTTCGGTTCAACATACGGCTAGCCCGAGCAACAAGGTATCCCATAACGGTGGAATTGGTAAGCCGGCAAACATACCAACGGGCATACCGGTCAATTACCAACAAACACAAAATCAGTGGAGTTCTCAACTTTTCGATTGCATGAACGACAGTGAAAATGCCGTGATCACATTGATAGCTCCATGCGTCACGTTCGGACAGATTGCGGAGATCGTTGACGAAGGCGCGACGCCTTGTGCGACAGCTGGGTTGTTGTACGGAGCACTATTTTTTACCGGGGCAAGTTTTGTGTATTCATACATGTTCAGGGCCAGGATACGAAAGAAGTTCGGGTTACCGGATGCTCCGGCTCCCGATTGGATCACTCACTTAGTCTGTATGCCGTTTGCTCTTTGTCAAGAGTATCGTGAGCTCAAGCACCATGGTTTTGACCCCATTCTTGGGTGGGCTGGGAATGTTCAACAAGCACAGCAGCAAGAGATGATGACCCCTCCAACAGGTCAACGAATGATGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

184

Amino Acids

20.1

Weight (kDa)

6.49

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	52 - 149	5.7e-27	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49030 AT3G18450 AT3G18460 AT3G18470
fragaria_vesca	FvH4_3g18880 FvH4_4g04070 FvH4_5g12451 FvH4_5g12460 FvH4_5g12460
malus_domestica	MD06G1212900.v1.1 MD06G1213000.v1.1 MD13G1217200.v1.1 MD13G1217300.v1.1 MD14G1224000.v1.1 MD14G1224100.v1.1 MD16G1222500.v1.1
prunus_persica	Prupe.1G042600_v2.0.a1 Prupe.1G042800_v2.0.a1 Prupe.1G043000_v2.0.a1 Prupe.1G043200_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043500_v2.0.a1 Prupe.1G043800_v2.0.a1 Prupe.1G347800_v2.0.a1 Prupe.5G219400_v2.0.a1 Prupe.5G219500_v2.0.a1
pyrus_communis	pycom06g19040 pycom06g19060 pycom06g19070 pycom14g18540
rosa_chinensis	RchiOBHm_Chr4g0394451 RchiOBHm_Chr4g0394461 RchiOBHm_Chr7g0185011
rosa_laevigata	RLG00000004939 RLG00000004940 RLG00000009697
rosa_multiflora	Rmu_ssc0000289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269270 Rroxscaffold_3G00269280 Rroxscaffold_5G00339460 Rroxscaffold_5G00339480
rosa_rugosa	Rorug03G0366000.1 Rorug03G0366100.1 Rorug03G0366800.1 Rorug06G0466200 Rorug06G0466200
rosa_samantha	Rh4BG049800 Rh7AG076800 Rh7AG076900 Rh7BG070500 Rh7BG070600 Rh7CG072000 Rh7CG072100 Rh7DG071000 Rh7DG071100
rosa_wichuraiana	Rw0G003400 Rw0G003410 Rw4G004200 Rw7G005870 Rw7G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	7
AccII	CGCG	1 cut(s)	263
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	404
AcoI	YGGCCR	1 cut(s)	16
AcyI	GRCGYC	1 cut(s)	266
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	3 cut(s)	476, 477, 533
AflIII	ACRYGT	1 cut(s)	336
AgeI	ACCGGT	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	47, 497
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	3 cut(s)	215, 281, 448
AluI	AGCT	3 cut(s)	215, 281, 448
Alw21I	GWGCWC	2 cut(s)	301, 450
AlwI	GGATC	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	2 cut(s)	16, 345
ApeKI	GCWGC	1 cut(s)	508
AsiGI	ACCGGT	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	345
AsuC2I	CCSGG	1 cut(s)	313
AsuNHI	GCTAGC	1 cut(s)	56
AvaI	CYCGRG	1 cut(s)	61
BalI	TGGCCA	1 cut(s)	18
BanII	GRGCYC	1 cut(s)	450
Bbv12I	GWGCWC	2 cut(s)	301, 450
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	1 cut(s)	541
BceAI	ACGGC	3 cut(s)	69, 182, 403
BcgI	CGANNNNNNTGC	2 cut(s)	21, 55
BciT130I	CCWGG	1 cut(s)	349
BciVI	GTATCC	2 cut(s)	85, 345
BclI	TGATCA	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	313
BfaI	CTAG	1 cut(s)	57
BfuI	GTATCC	2 cut(s)	85, 345
BisI	GCNGC	1 cut(s)	509
BlsI	GCNGC	1 cut(s)	510
Bme1390I	CCNGG	2 cut(s)	313, 349
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	2 cut(s)	313, 349
BmsI	GCATC	1 cut(s)	367
BmtI	GCTAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	313
BsaHI	GRCGYC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	312, 457
BsaWI	WCCGGW	2 cut(s)	124, 373
Bsc4I	CCNNNNNNNGG	3 cut(s)	476, 477, 533
Bse118I	RCCGGY	2 cut(s)	100, 124
Bse1I	ACTGG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	2 cut(s)	312, 457
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	3 cut(s)	476, 477, 533
BseNI	ACTGG	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	520
BseYI	CCCAGC	2 cut(s)	281, 485
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	2 cut(s)	18, 347
BshTI	ACCGGT	1 cut(s)	124
BsiHKAI	GWGCWC	2 cut(s)	301, 450
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	5 cut(s)	101, 125, 312, 374, 383
BslI	CCNNNNNNNGG	3 cut(s)	476, 477, 533
BsnI	GGCC	2 cut(s)	18, 347
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	301, 450
Bsp143I	GATC	3 cut(s)	201, 246, 396
Bsp19I	CCATGG	1 cut(s)	457
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	2 cut(s)	18, 347
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	387
BspOI	GCTAGC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	404
BsrFI	RCCGGY	2 cut(s)	100, 124
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	2 cut(s)	100, 124
BssECI	CCNNGG	2 cut(s)	312, 457
BssMI	GATC	3 cut(s)	201, 246, 396
BssNI	GRCGYC	1 cut(s)	266
BssT1I	CCWWGG	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	2 cut(s)	86, 188
BstACI	GRCGYC	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	58, 102
BstDEI	CTNAG	1 cut(s)	406
BstDSI	CCRYGG	1 cut(s)	457
BstEII	GGTNACC	1 cut(s)	369
BstENI	CCTNNNNNAGG	1 cut(s)	531
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	3 cut(s)	204, 249, 399
BstMBI	GATC	3 cut(s)	201, 246, 396
BstNI	CCWGG	1 cut(s)	349
BstNSI	RCATGY	1 cut(s)	340
BstPI	GGTNACC	1 cut(s)	369
BstSCI	CCNGG	2 cut(s)	311, 347
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	520
BstXI	CCANNNNNNTGG	1 cut(s)	86
BsuI	GTATCC	2 cut(s)	85, 345
BsuRI	GGCC	2 cut(s)	18, 347
BtgI	CCRYGG	1 cut(s)	457
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	2 cut(s)	158, 193
Cac8I	GCNNGC	2 cut(s)	58, 102
CfoI	GCGC	1 cut(s)	263
Cfr10I	RCCGGY	2 cut(s)	100, 124
Cfr13I	GGNCC	1 cut(s)	345
CseI	GACGC	2 cut(s)	211, 274
Csp6I	GTAC	1 cut(s)	292
CspAI	ACCGGT	1 cut(s)	124
CspCI	CAANNNNNGTGG	2 cut(s)	134, 169
CviAII	CATG	4 cut(s)	178, 219, 337, 458
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	406
DpnI	GATC	3 cut(s)	203, 248, 398
DpnII	GATC	3 cut(s)	201, 246, 396
EaeI	YGGCCR	1 cut(s)	16
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	450
Eco53kI	GAGCTC	1 cut(s)	448
Eco88I	CYCGRG	1 cut(s)	61
Eco91I	GGTNACC	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	448
EcoNI	CCTNNNNNAGG	1 cut(s)	531
EcoO65I	GGTNACC	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	4 cut(s)	181, 222, 340, 461
FatI	CATG	4 cut(s)	177, 218, 336, 457
FbaI	TGATCA	1 cut(s)	201
FblI	GTMKAC	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	509
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	1 cut(s)	509
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	1 cut(s)	509
GsaI	CCCAGC	2 cut(s)	285, 489
HaeIII	GGCC	2 cut(s)	18, 347
HapII	CCGG	5 cut(s)	101, 125, 312, 374, 383
HgaI	GACGC	2 cut(s)	211, 274
HhaI	GCGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	4 cut(s)	181, 222, 340, 461
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HincII	GTYRAC	3 cut(s)	8, 253, 539
HindII	GTYRAC	3 cut(s)	8, 253, 539
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	5 cut(s)	101, 125, 312, 374, 383
Hpy166II	GTNNAC	3 cut(s)	8, 253, 539
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	3 cut(s)	389, 434, 443
Hpy8I	GTNNAC	3 cut(s)	8, 253, 539
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	48, 251
HpyCH4III	ACNGT	2 cut(s)	86, 188
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	1 cut(s)	177
HpyF3I	CTNAG	1 cut(s)	406
HpySE526I	ACGT	1 cut(s)	227
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	4 cut(s)	181, 222, 340, 461
HspAI	GCGC	1 cut(s)	261
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	201, 246, 396
LmnI	GCTCC	4 cut(s)	220, 296, 385, 391
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	1 cut(s)	227
MaeIII	GTNAC	2 cut(s)	223, 369
MalI	GATC	3 cut(s)	203, 248, 398
MboI	GATC	3 cut(s)	201, 246, 396
MhlI	GDGCHC	2 cut(s)	301, 450
MlsI	TGGCCA	1 cut(s)	18
MluCI	AATT	2 cut(s)	90, 130
MluNI	TGGCCA	1 cut(s)	18
MmeI	TCCRAC	1 cut(s)	554
MnlI	CCTC	1 cut(s)	537
Mox20I	TGGCCA	1 cut(s)	18
MroNI	GCCGGC	1 cut(s)	100
MscI	TGGCCA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	84
Msp20I	TGGCCA	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	5 cut(s)	101, 125, 312, 374, 383
MspR9I	CCNGG	2 cut(s)	313, 349
MvaI	CCWGG	1 cut(s)	349
MvnI	CGCG	1 cut(s)	263
NaeI	GCCGGC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	313
NcoI	CCATGG	1 cut(s)	457
NdeII	GATC	3 cut(s)	201, 246, 396
NgoMIV	GCCGGC	1 cut(s)	100
NheI	GCTAGC	1 cut(s)	56
NlaIII	CATG	4 cut(s)	181, 222, 340, 461
NlaIV	GGNNCC	1 cut(s)	387
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	340
PciI	ACATGT	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	2 cut(s)	59, 272
PdiI	GCCGGC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	25
PinAI	ACCGGT	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	510
PscI	ACATGT	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	347
PspEI	GGTNACC	1 cut(s)	369
PspFI	CCCAGC	2 cut(s)	281, 485
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	345
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	1 cut(s)	84
SacI	GAGCTC	1 cut(s)	450
SalI	GTCGAC	1 cut(s)	6
SatI	GCNGC	1 cut(s)	509
Sau3AI	GATC	3 cut(s)	201, 246, 396
Sau96I	GGNCC	1 cut(s)	345
ScrFI	CCNGG	2 cut(s)	313, 349
SduI	GDGCHC	2 cut(s)	301, 450
SetI	ASST	7 cut(s)	40, 75, 217, 230, 283, 450, 538
SfaNI	GCATC	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	84
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	2 cut(s)	90, 130
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	2 cut(s)	311, 347
StyI	CCWWGG	1 cut(s)	457
TaaI	ACNGT	2 cut(s)	86, 188
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	2 cut(s)	7, 171
TasI	AATT	2 cut(s)	90, 130
TfiI	GAWTC	1 cut(s)	25
TscAI	CASTG	2 cut(s)	158, 193
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	508
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	194, 321
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	158, 193
XagI	CCTNNNNNAGG	1 cut(s)	531
XceI	RCATGY	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	7
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.