Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000960

Physical Location & Seq

Genomic Coordinates Forward (+)

3085151 .. 3085844

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G043200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTCATGCTTTCTCCCATGCATCACCTTCGGCCAAATCGCGGAAACTGTCGACGAAGGACGAAGTTCTTGCGTTACCCATAGCATAGTGTACGGGTTGTTGTTCACGATTCAATGCCATTGGGTCTACTCGTGCTTGTACAGAGAGAAATTGCGCCAAAAATTTGGTCTGCCAGAGGAGCCTTGTTGTGATTGTTGTGTTCATTTCTGCTGTGACCCGTGTGCCCTCTGCCAAGAACATGCTGAGCTCAAATCTAGAGGCTTTGACCCCTCCAAAGGTTGGATTGGGCCACCAACTGCTGCTCCACAGATGCCTCCTTCCATGTTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

111

Amino Acids

12.36

Weight (kDa)

6.03

Isoelectric Point (pI)

52.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49030 AT3G18450 AT3G18460 AT3G18470
fragaria_vesca	FvH4_3g18880 FvH4_4g04070 FvH4_5g12451 FvH4_5g12460 FvH4_5g12460
malus_domestica	MD06G1212900.v1.1 MD06G1213000.v1.1 MD13G1217200.v1.1 MD13G1217300.v1.1 MD14G1224000.v1.1 MD14G1224100.v1.1 MD16G1222500.v1.1
prunus_persica	Prupe.1G042600_v2.0.a1 Prupe.1G042800_v2.0.a1 Prupe.1G043000_v2.0.a1 Prupe.1G043200_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043500_v2.0.a1 Prupe.1G043800_v2.0.a1 Prupe.1G347800_v2.0.a1 Prupe.5G219400_v2.0.a1 Prupe.5G219500_v2.0.a1
pyrus_communis	pycom06g19040 pycom06g19060 pycom06g19070 pycom14g18540
rosa_chinensis	RchiOBHm_Chr4g0394451 RchiOBHm_Chr4g0394461 RchiOBHm_Chr7g0185011
rosa_laevigata	RLG00000004939 RLG00000004940 RLG00000009697
rosa_multiflora	Rmu_ssc0000289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269270 Rroxscaffold_3G00269280 Rroxscaffold_5G00339460 Rroxscaffold_5G00339480
rosa_rugosa	Rorug03G0366000.1 Rorug03G0366100.1 Rorug03G0366800.1 Rorug06G0466200 Rorug06G0466200
rosa_samantha	Rh4BG049800 Rh7AG076800 Rh7AG076900 Rh7BG070500 Rh7BG070600 Rh7CG072000 Rh7CG072100 Rh7DG071000 Rh7DG071100
rosa_wichuraiana	Rw0G003400 Rw0G003410 Rw4G004200 Rw7G005870 Rw7G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	279
AccI	GTMKAC	2 cut(s)	51, 126
AccII	CGCG	1 cut(s)	41
AciI	CCGC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	161
AfaI	GTAC	2 cut(s)	92, 140
AfiI	CCNNNNNNNGG	3 cut(s)	40, 275, 279
AgsI	TTSAA	2 cut(s)	113, 328
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw21I	GWGCWC	1 cut(s)	249
AoxI	GGCC	2 cut(s)	31, 287
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	161
ArsI	GACNNNNNNTTYG	2 cut(s)	151, 183
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	249
BauI	CACGAG	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	286
BcgI	CGANNNNNNTGC	4 cut(s)	10, 44, 51, 85
BfaI	CTAG	1 cut(s)	255
BisI	GCNGC	1 cut(s)	300
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	180
BmsI	GCATC	2 cut(s)	30, 300
Bpu1102I	GCTNAGC	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 275, 279
BseLI	CCNNNNNNNGG	3 cut(s)	40, 275, 279
BseMII	CTCAG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	191
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	2 cut(s)	33, 289
BsiHKAI	GWGCWC	1 cut(s)	249
BslI	CCNNNNNNNGG	3 cut(s)	40, 275, 279
BsnI	GGCC	2 cut(s)	33, 289
Bsp1286I	GDGCHC	2 cut(s)	226, 249
Bsp1407I	TGTACA	1 cut(s)	138
Bsp1720I	GCTNAGC	1 cut(s)	243
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	2 cut(s)	33, 289
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	138
BssSI	CACGAG	1 cut(s)	130
Bst2BI	CACGAG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	49
BstAUI	TGTACA	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	242
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	33, 289
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	91, 139
CviAII	CATG	4 cut(s)	6, 18, 239, 322
CviJI	RGCY	5 cut(s)	33, 181, 247, 261, 289
CviKI_1	RGCY	5 cut(s)	33, 181, 247, 261, 289
CviQI	GTAC	2 cut(s)	91, 139
DdeI	CTNAG	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	31
Ecl136II	GAGCTC	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	4 cut(s)	9, 21, 242, 325
FaiI	YATR	6 cut(s)	7, 19, 81, 86, 240, 323
FatI	CATG	4 cut(s)	5, 17, 238, 321
FblI	GTMKAC	2 cut(s)	51, 126
Fnu4HI	GCNGC	1 cut(s)	300
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	33, 289
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	4 cut(s)	9, 21, 242, 325
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HinfI	GANTC	1 cut(s)	109
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	4 cut(s)	52, 91, 105, 127
Hpy188III	TCNNGA	2 cut(s)	106, 255
Hpy8I	GTNNAC	4 cut(s)	52, 91, 105, 127
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	37, 50, 327
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	4 cut(s)	9, 21, 242, 325
HspAI	GCGC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	178, 307
LpnPI	CCDG	1 cut(s)	186
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	2 cut(s)	30, 300
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	2 cut(s)	73, 212
MhlI	GDGCHC	2 cut(s)	226, 249
MluCI	AATT	2 cut(s)	149, 161
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	5 cut(s)	169, 236, 251, 280, 324
Mph1103I	ATGCAT	1 cut(s)	23
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	178
NlaIII	CATG	4 cut(s)	9, 21, 242, 325
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	212
NsiI	ATGCAT	1 cut(s)	23
NspI	RCATGY	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	109
PflMI	CCANNNNNTGG	1 cut(s)	279
PkrI	GCNGC	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	287
RsaI	GTAC	2 cut(s)	92, 140
RsaNI	GTAC	2 cut(s)	91, 139
SacI	GAGCTC	1 cut(s)	249
SalI	GTCGAC	1 cut(s)	50
SatI	GCNGC	1 cut(s)	300
Sau96I	GGNCC	1 cut(s)	287
SduI	GDGCHC	2 cut(s)	226, 249
SetI	ASST	3 cut(s)	29, 249, 280
SfaNI	GCATC	2 cut(s)	30, 300
Sse9I	AATT	2 cut(s)	149, 161
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	51
TasI	AATT	2 cut(s)	149, 161
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	191
Van91I	CCANNNNNTGG	1 cut(s)	279
XapI	RAATTY	1 cut(s)	161
XbaI	TCTAGA	1 cut(s)	254
XceI	RCATGY	1 cut(s)	242
XmiI	GTMKAC	2 cut(s)	51, 126
XspI	CTAG	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.