Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000960

Physical Location & Seq

Genomic Coordinates Forward (+)

4920865 .. 4922108

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G005880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGATGCAAAATGTACAATACCTACCGCTGCTGATGCCTCAGTCCGCTACCGGCGAGGGTACTACTTGGAAAACAGGGCTCTTTGATTGCTTACTTGACCCCCCAAATGCTATAATGACAACGTTATGCCCATGTTGGACGTTCGGTCAGATTGCAGAGATTGTTGATAACGGTCAAACCTCCTGTAGTTGCAATGCTCTGATATACATGGTGATCTGGTGTTTCATCATGGTGCCATGCTTGTTGTCATGTACATACCGAAGAAAACTAAGGAACAAACTTGACCTGCCCGAGAGCCCCGGTCCCGACTGCATCATCCACTGCTTATGCGAGCTGTGTGCTCTCTGCCAAGAACATAGGGAGCTTGAGCTCAGAGGCCTCGACCCTTCATTAGGATGGGTAGGAAACATGGAGCAACTTCAGAGGATGCAACAAAAGAGACAAGGTACAGTGGTTGTTCCACCAATGACTCAAAGAATGACGGGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

163

Amino Acids

18.45

Weight (kDa)

5.63

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAC8	PF04749	23 - 121	6e-29	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49030 AT3G18450 AT3G18460 AT3G18470
fragaria_vesca	FvH4_3g18880 FvH4_4g04070 FvH4_5g12451 FvH4_5g12460 FvH4_5g12460
malus_domestica	MD06G1212900.v1.1 MD06G1213000.v1.1 MD13G1217200.v1.1 MD13G1217300.v1.1 MD14G1224000.v1.1 MD14G1224100.v1.1 MD16G1222500.v1.1
prunus_persica	Prupe.1G042600_v2.0.a1 Prupe.1G042800_v2.0.a1 Prupe.1G043000_v2.0.a1 Prupe.1G043200_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043300_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043400_v2.0.a1 Prupe.1G043500_v2.0.a1 Prupe.1G043800_v2.0.a1 Prupe.1G347800_v2.0.a1 Prupe.5G219400_v2.0.a1 Prupe.5G219500_v2.0.a1
pyrus_communis	pycom06g19040 pycom06g19060 pycom06g19070 pycom14g18540
rosa_chinensis	RchiOBHm_Chr4g0394451 RchiOBHm_Chr4g0394461 RchiOBHm_Chr7g0185011
rosa_laevigata	RLG00000004939 RLG00000004940 RLG00000009697
rosa_multiflora	Rmu_ssc0000289.1_g000005
rosa_roxburghii	Rroxscaffold_3G00269270 Rroxscaffold_3G00269280 Rroxscaffold_5G00339460 Rroxscaffold_5G00339480
rosa_rugosa	Rorug03G0366000.1 Rorug03G0366100.1 Rorug03G0366800.1 Rorug06G0466200 Rorug06G0466200
rosa_samantha	Rh4BG049800 Rh7AG076800 Rh7AG076900 Rh7BG070500 Rh7BG070600 Rh7CG072000 Rh7CG072100 Rh7DG071000 Rh7DG071100
rosa_wichuraiana	Rw0G003400 Rw0G003410 Rw4G004200 Rw7G005870 Rw7G005880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	294
AccB1I	GGYRCC	1 cut(s)	232
AciI	CCGC	2 cut(s)	26, 45
AclI	AACGTT	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	4 cut(s)	15, 61, 253, 448
AfiI	CCNNNNNNNGG	1 cut(s)	392
AhdI	GACNNNNNGTC	1 cut(s)	144
AluBI	AGCT	3 cut(s)	334, 364, 370
AluI	AGCT	3 cut(s)	334, 364, 370
Alw21I	GWGCWC	2 cut(s)	343, 372
Alw26I	GTCTC	1 cut(s)	433
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	1 cut(s)	223
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	302
BaeI	ACNNNNGTAYC	2 cut(s)	438, 471
BanI	GGYRCC	1 cut(s)	232
BanII	GRGCYC	3 cut(s)	81, 299, 372
Bbv12I	GWGCWC	2 cut(s)	343, 372
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	1 cut(s)	390
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BcnI	CCSGG	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	433
BfmI	CTRYAG	1 cut(s)	184
BfuAI	ACCTGC	1 cut(s)	294
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	1 cut(s)	302
BmeRI	GACNNNNNGTC	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	234, 304
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	3 cut(s)	24, 321, 417
BpuEI	CTTGAG	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse118I	RCCGGY	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	199
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	3 cut(s)	315, 401, 432
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	2 cut(s)	53, 385
BseXI	GCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	378
BshNI	GGYRCC	1 cut(s)	232
BsiHKAI	GWGCWC	2 cut(s)	343, 372
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	2 cut(s)	51, 300
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	378
BsoBI	CYCGRG	1 cut(s)	290
Bsp1286I	GDGCHC	4 cut(s)	81, 299, 343, 372
Bsp1407I	TGTACA	2 cut(s)	13, 251
Bsp143I	GATC	1 cut(s)	213
BspACI	CCGC	2 cut(s)	26, 45
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	2 cut(s)	52, 384
BspLI	GGNNCC	2 cut(s)	234, 304
BspMI	ACCTGC	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	50
BsrGI	TGTACA	2 cut(s)	13, 251
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	173, 451
BstAUI	TGTACA	2 cut(s)	13, 251
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	3 cut(s)	39, 269, 371
BstENI	CCTNNNNNAGG	1 cut(s)	390
BstF5I	GGATG	3 cut(s)	315, 401, 432
BstKTI	GATC	1 cut(s)	216
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	184
BstV1I	GCAGC	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	3 cut(s)	315, 401, 432
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	2 cut(s)	319, 456
BveI	ACCTGC	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	332
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	4 cut(s)	14, 60, 252, 447
CviAII	CATG	6 cut(s)	132, 208, 229, 237, 249, 409
CviJI	RGCY	7 cut(s)	79, 297, 334, 364, 370, 378, 486
CviKI_1	RGCY	7 cut(s)	79, 297, 334, 364, 370, 378, 486
CviQI	GTAC	4 cut(s)	14, 60, 252, 447
DdeI	CTNAG	3 cut(s)	39, 269, 371
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
DriI	GACNNNNNGTC	1 cut(s)	144
Eam1105I	GACNNNNNGTC	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	370
Eco147I	AGGCCT	1 cut(s)	378
Eco24I	GRGCYC	3 cut(s)	81, 299, 372
Eco47I	GGWCC	1 cut(s)	302
Eco53kI	GAGCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	404
Eco88I	CYCGRG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	370
EcoNI	CCTNNNNNAGG	1 cut(s)	390
EcoT38I	GRGCYC	3 cut(s)	81, 299, 372
FaeI	CATG	6 cut(s)	135, 211, 232, 240, 252, 412
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	6 cut(s)	131, 207, 228, 236, 248, 408
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	3 cut(s)	302, 408, 439
FriOI	GRGCYC	3 cut(s)	81, 299, 372
Fsp4HI	GCNGC	1 cut(s)	29
GluI	GCNGC	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	2 cut(s)	51, 300
Hin1II	CATG	6 cut(s)	135, 211, 232, 240, 252, 412
HinfI	GANTC	1 cut(s)	469
HpaII	CCGG	2 cut(s)	51, 300
HphI	GGTGA	1 cut(s)	223
Hpy188I	TCNGA	4 cut(s)	150, 201, 374, 423
Hpy188III	TCNNGA	1 cut(s)	305
HpyAV	CCTTC	1 cut(s)	396
HpyCH4III	ACNGT	2 cut(s)	173, 451
HpyCH4IV	ACGT	2 cut(s)	122, 140
HpyCH4V	TGCA	5 cut(s)	7, 155, 192, 312, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	3 cut(s)	39, 269, 371
HpySE526I	ACGT	2 cut(s)	122, 140
Hsp92II	CATG	6 cut(s)	135, 211, 232, 240, 252, 412
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	2 cut(s)	361, 412
LpnPI	CCDG	6 cut(s)	60, 64, 196, 202, 299, 313
Lsp1109I	GCAGC	1 cut(s)	15
LweI	GCATC	3 cut(s)	24, 321, 417
MaeII	ACGT	2 cut(s)	122, 140
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	1 cut(s)	273
MhlI	GDGCHC	4 cut(s)	81, 299, 343, 372
MlyI	GAGTC	1 cut(s)	463
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	6 cut(s)	48, 49, 190, 368, 389, 417
MslI	CAYNNNNRTG	2 cut(s)	230, 394
MspA1I	CMGCKG	1 cut(s)	28
MspI	CCGG	2 cut(s)	51, 300
MspR9I	CCNGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	34
NciI	CCSGG	1 cut(s)	300
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	6 cut(s)	135, 211, 232, 240, 252, 412
NlaIV	GGNNCC	2 cut(s)	234, 304
PceI	AGGCCT	1 cut(s)	378
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
Psp124BI	GAGCTC	1 cut(s)	372
Psp1406I	AACGTT	1 cut(s)	122
PspN4I	GGNNCC	2 cut(s)	234, 304
PspPI	GGNCC	1 cut(s)	302
RsaI	GTAC	4 cut(s)	15, 61, 253, 448
RsaNI	GTAC	4 cut(s)	14, 60, 252, 447
RseI	CAYNNNNRTG	2 cut(s)	230, 394
SacI	GAGCTC	1 cut(s)	372
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	4 cut(s)	81, 299, 343, 372
SetI	ASST	9 cut(s)	24, 125, 143, 182, 288, 336, 366, 372, 448
SfaNI	GCATC	3 cut(s)	24, 321, 417
SfcI	CTRYAG	1 cut(s)	184
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	230, 394
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SseBI	AGGCCT	1 cut(s)	378
SsiI	CCGC	2 cut(s)	26, 45
SstI	GAGCTC	1 cut(s)	372
StuI	AGGCCT	1 cut(s)	378
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	2 cut(s)	173, 451
TaiI	ACGT	2 cut(s)	125, 143
TaqI	TCGA	1 cut(s)	381
TaqII	GACCGA	1 cut(s)	134
TatI	WGTACW	2 cut(s)	13, 251
TscAI	CASTG	2 cut(s)	326, 456
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	214, 378
TspRI	CASTG	2 cut(s)	326, 456
VpaK11BI	GGWCC	1 cut(s)	302
XagI	CCTNNNNNAGG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.