Rh7AG076800

Protein PLANT CADMIUM RESISTANCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000960
Physical Location & Seq
Reverse (-)
5500962 .. 5502690
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG076800.1

Sequence Viewer

Length: 1119 bp
ATGGGACGTCCTGAGGCAGATCATGATCATCAAGCATCAAGTTCGAACCAGGCATTTCATCAAACAGATTGCGAACAACATTCCGAGAAGCCTGAACACCAAGTTTTGCCTCCAAACCCCACTCATTGCCAGACCTATGTTTTAGGGCGTCCGTCTGGGGCAGAGAATGAAGATCATCATCAACAACAAGAACAAGTCCAGCCTACAGAGCACATTGCACCTCGAAACTCGCCCGCTGATTCCCAAGAAACTCAAGCAAATCAAACGCATCAACAAGAGCCGCAGTCGCCTTATCACCACAATGTGCACTACTATTTCCCAACGCCCAACCCCCATCATGGTACTAATTTGACATTGCATAATTTTCCTAACCAATATGCACCACGGGGCCAAGTACCCCAATTCCAAGCAATGCCTCCAGGTTTACGGCCATATCCGACCTTATATCCTTCTCCTCCTCCTCCTCCTCCTCTTTATCATTCTCAACCTTTAAACAATTATAGTGGATCACAGCATGTACAACAAGTAGTACTGCACCCTCCTCCGGCTGCCTACAATTACCCTTCTAGTTCTAGGAACCCCCAGCCCTGTGTAAATTACAACAATTTTGCAGCAACTGGTATACCCATGATGCAAAATGTACAATACCTACCGCTGCTGATGCCTCAGTCCGCTACCGGCGAGGGTACTACTTGGAAAACAGGGCTCTTTGATTGCTTACTTGACCCCCCAAATGCTATAATGACAACGTTATGCCCATGTTGGACGTTCGGTCAGATTGCAGAGATTGTTGATAACGGTCAAACCTCCTGTAGTTGCAATGCTCTGATATACATGGTGATCTGGTGTTTCATCATGGTGCCATGCTTGTTGTCATGTACATACCGAAGAAAACTAAGGAACAAACTTGACCTGCCCGAGAGCCCCGGTCCCGACTGCATCATCCACTGCTTATGCGAGCTGTGTGCTCTCTGCCAAGAACATAGGGAGCTTGAGCTCAGAGGCCTCGACCCTTCATTAGGATGGGTAGGAAACATGGAGCAACTTCAGAGGATGCAACAAAAGAGACAAGGTACAGTGGTTGTTCCACCAATGACTCAAAGAATGACGGGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

372

Amino Acids

41.96

Weight (kDa)

6.06

Isoelectric Point (pI)

61.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 232 - 330 4e-28 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 10
Acc36I ACCTGC 1 cut(s) 921
AccB1I GGYRCC 1 cut(s) 859
AccI GTMKAC 1 cut(s) 622
AciI CCGC 4 cut(s) 234, 281, 653, 672
AclI AACGTT 1 cut(s) 749
AclWI GGATC 1 cut(s) 514
AcoI YGGCCR 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 1031
AcyI GRCGYC 2 cut(s) 7, 148
AdeI CACNNNGTG 1 cut(s) 304
AfaI GTAC 8 cut(s) 343, 396, 519, 531, 642, 688, 880, 1075
AfiI CCNNNNNNNGG 3 cut(s) 338, 544, 1019
AhdI GACNNNNNGTC 1 cut(s) 771
AjnI CCWGG 2 cut(s) 48, 418
AluBI AGCT 3 cut(s) 961, 991, 997
AluI AGCT 3 cut(s) 961, 991, 997
Alw21I GWGCWC 4 cut(s) 213, 309, 970, 999
Alw26I GTCTC 1 cut(s) 1060
Alw44I GTGCAC 1 cut(s) 305
AlwI GGATC 1 cut(s) 514
AlwNI CAGNNNCTG 1 cut(s) 617
Ama87I CYCGRG 1 cut(s) 917
AoxI GGCC 3 cut(s) 388, 428, 1003
ApaLI GTGCAC 1 cut(s) 305
ApeKI GCWGC 3 cut(s) 548, 611, 655
AspS9I GGNCC 2 cut(s) 388, 929
AsuC2I CCSGG 1 cut(s) 927
AsuHPI GGTGA 2 cut(s) 287, 850
AsuII TTCGAA 1 cut(s) 44
AvaI CYCGRG 1 cut(s) 917
AvaII GGWCC 1 cut(s) 929
AxyI CCTNAGG 1 cut(s) 12
BaeGI GKGCMC 1 cut(s) 309
BaeI ACNNNNGTAYC 2 cut(s) 1065, 1098
BanI GGYRCC 1 cut(s) 859
BanII GRGCYC 3 cut(s) 708, 926, 999
Bbv12I GWGCWC 4 cut(s) 213, 309, 970, 999
BbvI GCAGC 3 cut(s) 535, 623, 642
BccI CCATC 2 cut(s) 342, 1017
BceAI ACGGC 1 cut(s) 443
BcgI CGANNNNNNTGC 4 cut(s) 24, 58, 947, 981
BciT130I CCWGG 2 cut(s) 50, 420
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 1 cut(s) 927
BcoDI GTCTC 1 cut(s) 1060
BfaI CTAG 2 cut(s) 567, 573
BfmI CTRYAG 2 cut(s) 204, 811
BfuAI ACCTGC 1 cut(s) 921
BisI GCNGC 4 cut(s) 281, 549, 612, 656
BlsI GCNGC 4 cut(s) 282, 550, 613, 657
BmcAI AGTACT 1 cut(s) 531
Bme1390I CCNGG 3 cut(s) 50, 420, 927
Bme18I GGWCC 1 cut(s) 929
BmeRI GACNNNNNGTC 1 cut(s) 771
BmeT110I CYCGRG 1 cut(s) 917
BmgT120I GGNCC 2 cut(s) 388, 929
BmiI GGNNCC 4 cut(s) 389, 578, 861, 931
BmrFI CCNGG 3 cut(s) 50, 420, 927
BmsI GCATC 6 cut(s) 44, 277, 621, 651, 948, 1044
BpmI CTGGAG 1 cut(s) 402
Bpu14I TTCGAA 1 cut(s) 44
BpuEI CTTGAG 2 cut(s) 237, 1013
BpuMI CCSGG 1 cut(s) 927
BsaBI GATNNNNATC 2 cut(s) 24, 177
BsaHI GRCGYC 2 cut(s) 7, 148
BsaJI CCNNGG 2 cut(s) 383, 925
Bsc4I CCNNNNNNNGG 3 cut(s) 338, 544, 1019
Bse118I RCCGGY 1 cut(s) 677
Bse1I ACTGG 1 cut(s) 622
Bse21I CCTNAGG 1 cut(s) 12
Bse3DI GCAATG 5 cut(s) 124, 213, 353, 417, 826
Bse8I GATNNNNATC 2 cut(s) 24, 177
BseBI CCWGG 2 cut(s) 50, 420
BseDI CCNNGG 2 cut(s) 383, 925
BseGI GGATG 3 cut(s) 942, 1028, 1059
BseJI GATNNNNATC 2 cut(s) 24, 177
BseLI CCNNNNNNNGG 3 cut(s) 338, 544, 1019
BseMI GCAATG 5 cut(s) 124, 213, 353, 417, 826
BseMII CTCAG 2 cut(s) 680, 1012
BseNI ACTGG 1 cut(s) 622
BseRI GAGGAG 7 cut(s) 444, 447, 450, 453, 456, 459, 531
BseSI GKGCMC 1 cut(s) 309
BseXI GCAGC 3 cut(s) 535, 623, 642
BseYI CCCAGC 1 cut(s) 582
BsgI GTGCAG 1 cut(s) 518
BshFI GGCC 3 cut(s) 390, 430, 1005
BshNI GGYRCC 1 cut(s) 859
BsiHKAI GWGCWC 4 cut(s) 213, 309, 970, 999
BsiHKCI CYCGRG 1 cut(s) 917
BsiSI CCGG 3 cut(s) 545, 678, 927
BslFI GGGAC 2 cut(s) 18, 915
BslI CCNNNNNNNGG 3 cut(s) 338, 544, 1019
BsmAI GTCTC 1 cut(s) 1060
BsmFI GGGAC 2 cut(s) 18, 915
BsnI GGCC 3 cut(s) 390, 430, 1005
BsoBI CYCGRG 1 cut(s) 917
Bsp119I TTCGAA 1 cut(s) 44
Bsp1286I GDGCHC 6 cut(s) 213, 309, 708, 926, 970, 999
Bsp1407I TGTACA 3 cut(s) 517, 640, 878
Bsp143I GATC 5 cut(s) 19, 25, 172, 506, 840
BspACI CCGC 4 cut(s) 234, 281, 653, 672
BspANI GGCC 3 cut(s) 390, 430, 1005
BspCNI CTCAG 3 cut(s) 4, 679, 1011
BspHI TCATGA 1 cut(s) 22
BspLI GGNNCC 4 cut(s) 389, 578, 861, 931
BspMI ACCTGC 1 cut(s) 921
BspPI GGATC 1 cut(s) 514
BspT104I TTCGAA 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 859
BsrDI GCAATG 5 cut(s) 124, 213, 353, 417, 826
BsrFI RCCGGY 1 cut(s) 677
BsrGI TGTACA 3 cut(s) 517, 640, 878
BsrI ACTGG 1 cut(s) 622
BssAI RCCGGY 1 cut(s) 677
BssECI CCNNGG 2 cut(s) 383, 925
BssMI GATC 5 cut(s) 19, 25, 172, 506, 840
BssNAI GTATAC 1 cut(s) 623
BssNI GRCGYC 2 cut(s) 7, 148
Bst1107I GTATAC 1 cut(s) 623
Bst2UI CCWGG 2 cut(s) 50, 420
Bst4CI ACNGT 2 cut(s) 800, 1078
BstACI GRCGYC 2 cut(s) 7, 148
BstAUI TGTACA 3 cut(s) 517, 640, 878
BstBI TTCGAA 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 234, 959
BstDEI CTNAG 4 cut(s) 12, 666, 896, 998
BstDSI CCRYGG 1 cut(s) 383
BstENI CCTNNNNNAGG 1 cut(s) 1017
BstF5I GGATG 3 cut(s) 942, 1028, 1059
BstKTI GATC 5 cut(s) 22, 28, 175, 509, 843
BstMAI GTCTC 1 cut(s) 1060
BstMBI GATC 5 cut(s) 19, 25, 172, 506, 840
BstMWI GCNNNNNNNGC 3 cut(s) 208, 286, 661
BstNI CCWGG 2 cut(s) 50, 420
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 3 cut(s) 48, 418, 925
BstSFI CTRYAG 2 cut(s) 204, 811
BstSLI GKGCMC 1 cut(s) 309
BstV1I GCAGC 3 cut(s) 535, 623, 642
BstZ17I GTATAC 1 cut(s) 623
Bsu36I CCTNAGG 1 cut(s) 12
BsuRI GGCC 3 cut(s) 390, 430, 1005
BtgI CCRYGG 1 cut(s) 383
BtsCI GGATG 3 cut(s) 942, 1028, 1059
BtsI GCAGTG 1 cut(s) 946
BtsIMutI CAGTG 2 cut(s) 946, 1083
BveI ACCTGC 1 cut(s) 921
Cac8I GCNNGC 2 cut(s) 234, 959
CaiI CAGNNNCTG 1 cut(s) 617
CciI TCATGA 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 677
Cfr13I GGNCC 2 cut(s) 388, 929
CseI GACGC 1 cut(s) 137
Csp6I GTAC 8 cut(s) 342, 395, 518, 530, 641, 687, 879, 1074
CspCI CAANNNNNGTGG 2 cut(s) 484, 519
CviQI GTAC 8 cut(s) 342, 395, 518, 530, 641, 687, 879, 1074
DdeI CTNAG 4 cut(s) 12, 666, 896, 998
DpnI GATC 5 cut(s) 21, 27, 174, 508, 842
DpnII GATC 5 cut(s) 19, 25, 172, 506, 840
DraI TTTAAA 1 cut(s) 492
DraIII CACNNNGTG 1 cut(s) 304
DriI GACNNNNNGTC 1 cut(s) 771
EaeI YGGCCR 1 cut(s) 428
Eam1105I GACNNNNNGTC 1 cut(s) 771
Ecl136II GAGCTC 1 cut(s) 997
Eco147I AGGCCT 1 cut(s) 1005
Eco24I GRGCYC 3 cut(s) 708, 926, 999
Eco47I GGWCC 1 cut(s) 929
Eco53kI GAGCTC 1 cut(s) 997
Eco57I CTGAAG 1 cut(s) 1031
Eco81I CCTNAGG 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 917
EcoICRI GAGCTC 1 cut(s) 997
EcoNI CCTNNNNNAGG 1 cut(s) 1017
EcoRII CCWGG 2 cut(s) 48, 418
EcoT38I GRGCYC 3 cut(s) 708, 926, 999
FaqI GGGAC 2 cut(s) 18, 915
FauI CCCGC 1 cut(s) 241
FbaI TGATCA 1 cut(s) 25
FblI GTMKAC 1 cut(s) 622
Fnu4HI GCNGC 4 cut(s) 281, 549, 612, 656
FokI GGATG 3 cut(s) 929, 1035, 1066
FriOI GRGCYC 3 cut(s) 708, 926, 999
Fsp4HI GCNGC 4 cut(s) 281, 549, 612, 656
FspBI CTAG 2 cut(s) 567, 573
GluI GCNGC 4 cut(s) 281, 549, 612, 656
GsaI CCCAGC 1 cut(s) 586
GsuI CTGGAG 1 cut(s) 402
HaeIII GGCC 3 cut(s) 390, 430, 1005
HapII CCGG 3 cut(s) 545, 678, 927
HgaI GACGC 1 cut(s) 137
Hin1I GRCGYC 2 cut(s) 7, 148
HinfI GANTC 2 cut(s) 239, 1096
HpaII CCGG 3 cut(s) 545, 678, 927
HphI GGTGA 2 cut(s) 287, 850
Hpy166II GTNNAC 3 cut(s) 307, 425, 623
Hpy188I TCNGA 6 cut(s) 85, 438, 777, 828, 1001, 1050
Hpy188III TCNNGA 3 cut(s) 11, 23, 932
Hpy8I GTNNAC 3 cut(s) 307, 425, 623
HpyAV CCTTC 3 cut(s) 459, 573, 1023
HpyCH4III ACNGT 2 cut(s) 800, 1078
HpyCH4IV ACGT 3 cut(s) 7, 749, 767
HpyF10VI GCNNNNNNNGC 3 cut(s) 208, 286, 661
HpyF3I CTNAG 4 cut(s) 12, 666, 896, 998
HpySE526I ACGT 3 cut(s) 7, 749, 767
Hsp92I GRCGYC 2 cut(s) 7, 148
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 5 cut(s) 19, 25, 172, 506, 840
LmnI GCTCC 2 cut(s) 988, 1039
Lsp1109I GCAGC 3 cut(s) 535, 623, 642
LweI GCATC 6 cut(s) 44, 277, 621, 651, 948, 1044
MaeI CTAG 2 cut(s) 567, 573
MaeII ACGT 3 cut(s) 7, 749, 767
MalI GATC 5 cut(s) 21, 27, 174, 508, 842
MboI GATC 5 cut(s) 19, 25, 172, 506, 840
MboII GAAGA 2 cut(s) 182, 900
MhlI GDGCHC 6 cut(s) 213, 309, 708, 926, 970, 999
MluCI AATT 7 cut(s) 346, 361, 401, 496, 556, 595, 604
MlyI GAGTC 1 cut(s) 1090
MmeI TCCRAC 2 cut(s) 461, 743
MseI TTAA 1 cut(s) 491
MslI CAYNNNNRTG 3 cut(s) 300, 857, 1021
MspA1I CMGCKG 2 cut(s) 236, 655
MspI CCGG 3 cut(s) 545, 678, 927
MspR9I CCNGG 3 cut(s) 50, 420, 927
MvaI CCWGG 2 cut(s) 50, 420
MwoI GCNNNNNNNGC 3 cut(s) 208, 286, 661
NciI CCSGG 1 cut(s) 927
NdeII GATC 5 cut(s) 19, 25, 172, 506, 840
NlaIV GGNNCC 4 cut(s) 389, 578, 861, 931
NspI RCATGY 1 cut(s) 518
NspV TTCGAA 1 cut(s) 44
PagI TCATGA 1 cut(s) 22
PceI AGGCCT 1 cut(s) 1005
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 4 cut(s) 282, 550, 613, 657
PleI GAGTC 1 cut(s) 1090
PpsI GAGTC 1 cut(s) 1090
Psp124BI GAGCTC 1 cut(s) 999
Psp1406I AACGTT 1 cut(s) 749
Psp6I CCWGG 2 cut(s) 48, 418
PspFI CCCAGC 1 cut(s) 582
PspGI CCWGG 2 cut(s) 48, 418
PspN4I GGNNCC 4 cut(s) 389, 578, 861, 931
PspPI GGNCC 2 cut(s) 388, 929
PstNI CAGNNNCTG 1 cut(s) 617
RsaI GTAC 8 cut(s) 343, 396, 519, 531, 642, 688, 880, 1075
RsaNI GTAC 8 cut(s) 342, 395, 518, 530, 641, 687, 879, 1074
RseI CAYNNNNRTG 3 cut(s) 300, 857, 1021
SacI GAGCTC 1 cut(s) 999
SaqAI TTAA 1 cut(s) 491
SatI GCNGC 4 cut(s) 281, 549, 612, 656
Sau3AI GATC 5 cut(s) 19, 25, 172, 506, 840
Sau96I GGNCC 2 cut(s) 388, 929
ScaI AGTACT 1 cut(s) 531
SchI GAGTC 1 cut(s) 1090
ScrFI CCNGG 3 cut(s) 50, 420, 927
SduI GDGCHC 6 cut(s) 213, 309, 708, 926, 970, 999
SfaNI GCATC 6 cut(s) 44, 277, 621, 651, 948, 1044
SfcI CTRYAG 2 cut(s) 204, 811
SfuI TTCGAA 1 cut(s) 44
SinI GGWCC 1 cut(s) 929
SmiMI CAYNNNNRTG 3 cut(s) 300, 857, 1021
SmlI CTYRAG 2 cut(s) 252, 992
SmoI CTYRAG 2 cut(s) 252, 992
Sse9I AATT 7 cut(s) 346, 361, 401, 496, 556, 595, 604
SseBI AGGCCT 1 cut(s) 1005
SsiI CCGC 4 cut(s) 234, 281, 653, 672
SspMI CTAG 2 cut(s) 567, 573
SstI GAGCTC 1 cut(s) 999
StuI AGGCCT 1 cut(s) 1005
StyD4I CCNGG 3 cut(s) 48, 418, 925
TaaI ACNGT 2 cut(s) 800, 1078
TaiI ACGT 3 cut(s) 10, 752, 770
TaqI TCGA 3 cut(s) 44, 223, 1008
TaqII GACCGA 1 cut(s) 761
TasI AATT 7 cut(s) 346, 361, 401, 496, 556, 595, 604
TatI WGTACW 4 cut(s) 517, 529, 640, 878
TauI GCSGC 1 cut(s) 283
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 491
Tru9I TTAA 1 cut(s) 491
TscAI CASTG 2 cut(s) 953, 1083
TseI GCWGC 3 cut(s) 548, 611, 655
TspDTI ATGAA 4 cut(s) 47, 183, 841, 1005
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 2 cut(s) 953, 1083
VneI GTGCAC 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 929
XagI CCTNNNNNAGG 1 cut(s) 1017
XceI RCATGY 1 cut(s) 518
XmiI GTMKAC 1 cut(s) 622
XspI CTAG 2 cut(s) 567, 573
ZraI GACGTC 1 cut(s) 8
ZrmI AGTACT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.