Rh4BG049800

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000960
Physical Location & Seq
Forward (+)
8972041 .. 8973882
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG049800.1

Sequence Viewer

Length: 366 bp
ATGCAAAGCTACTTTTTCATTGTGTGTGGTTGCATAACATGCCTTCTCCCATGTATCACCTTCGGCCGAATTGCAGAAATTGTGGATGAAGGACAAACTTCATGCTTTAACCAAGGCTGCGTCTACGGATTGTTGATGATGGTGCAATTTCAATGGCTCTATTCGTGCATCTATAGAGAGAAAATGCGCAAAAAGTTCAGTTTGCCGGAACAACCTTGTTGCGATTGTTGCGTTAATTTCTGCTGCGAATTATGTGCCCTTTGTCAAGAGCACGCGGAGCTCAAAGCTAGAGGATTTGATCCCTCCATCGGTTGGACTGGGCAACCAAATGCTGTTCCCAAGATGCATTTCTCCATGTTTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

121

Amino Acids

13.86

Weight (kDa)

6.67

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 10 - 93 5e-24 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 188
AccB7I CCANNNNNTGG 1 cut(s) 312
AccI GTMKAC 1 cut(s) 123
AccII CGCG 1 cut(s) 275
AciI CCGC 1 cut(s) 275
AclWI GGATC 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 64
AfiI CCNNNNNNNGG 2 cut(s) 308, 312
AgsI TTSAA 1 cut(s) 152
AjuI GAANNNNNNNTTGG 2 cut(s) 332, 364
AluBI AGCT 3 cut(s) 9, 280, 287
AluI AGCT 3 cut(s) 9, 280, 287
Alw21I GWGCWC 2 cut(s) 273, 282
AlwI GGATC 1 cut(s) 293
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 2 cut(s) 117, 243
AspLEI GCGC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 49
BaeGI GKGCMC 1 cut(s) 259
BanII GRGCYC 1 cut(s) 282
Bbv12I GWGCWC 2 cut(s) 273, 282
BbvI GCAGC 2 cut(s) 104, 230
BccI CCATC 2 cut(s) 133, 314
BcgI CGANNNNNNTGC 2 cut(s) 236, 270
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 172
BisI GCNGC 2 cut(s) 118, 244
BlsI GCNGC 2 cut(s) 119, 245
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 2 cut(s) 177, 333
BmuI ACTGGG 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 112
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 312
Bse1I ACTGG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 2 cut(s) 308, 312
BseNI ACTGG 1 cut(s) 322
BseSI GKGCMC 1 cut(s) 259
BseX3I CGGCCG 1 cut(s) 64
BseXI GCAGC 2 cut(s) 104, 230
Bsh1236I CGCG 1 cut(s) 275
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 2 cut(s) 273, 282
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 2 cut(s) 308, 312
BsnI GGCC 1 cut(s) 66
Bsp1286I GDGCHC 3 cut(s) 259, 273, 282
Bsp143I GATC 1 cut(s) 298
BspACI CCGC 1 cut(s) 275
BspANI GGCC 1 cut(s) 66
BspFNI CGCG 1 cut(s) 275
BspPI GGATC 1 cut(s) 293
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 112
BstAPI GCANNNNNTGC 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 273
BstF5I GGATG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 275
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 1 cut(s) 301
BstMBI GATC 1 cut(s) 298
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 3 cut(s) 39, 228, 277
BstNSI RCATGY 1 cut(s) 42
BstSFI CTRYAG 1 cut(s) 172
BstSLI GKGCMC 1 cut(s) 259
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 2 cut(s) 104, 230
BstZI CGGCCG 1 cut(s) 64
BsuRI GGCC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 1 cut(s) 189
CseI GACGC 1 cut(s) 109
CviAII CATG 4 cut(s) 39, 51, 102, 355
CviJI RGCY 6 cut(s) 9, 66, 117, 157, 280, 287
CviKI_1 RGCY 6 cut(s) 9, 66, 117, 157, 280, 287
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
DraI TTTAAA 1 cut(s) 361
EaeI YGGCCR 1 cut(s) 64
EagI CGGCCG 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 280
EclXI CGGCCG 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 282
Eco52I CGGCCG 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 112
FaeI CATG 4 cut(s) 42, 54, 105, 358
FaiI YATR 7 cut(s) 35, 40, 52, 103, 174, 253, 356
FatI CATG 4 cut(s) 38, 50, 101, 354
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 2 cut(s) 118, 244
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 2 cut(s) 118, 244
FspBI CTAG 1 cut(s) 288
FspI TGCGCA 1 cut(s) 188
GlaI GCGC 1 cut(s) 188
GluI GCNGC 2 cut(s) 118, 244
HaeIII GGCC 1 cut(s) 66
HapII CCGG 1 cut(s) 206
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 189
Hin1II CATG 4 cut(s) 42, 54, 105, 358
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HpaII CCGG 1 cut(s) 206
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 53, 70, 83
HpyCH4V TGCA 6 cut(s) 4, 33, 74, 145, 168, 346
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 228, 277
Hsp92II CATG 4 cut(s) 42, 54, 105, 358
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 2 cut(s) 219, 303
Lsp1109I GCAGC 2 cut(s) 104, 230
LweI GCATC 2 cut(s) 177, 333
MaeI CTAG 1 cut(s) 288
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MhlI GDGCHC 3 cut(s) 259, 273, 282
MluCI AATT 5 cut(s) 69, 78, 146, 235, 248
MmeI TCCRAC 1 cut(s) 293
MnlI CCTC 2 cut(s) 284, 313
Mph1103I ATGCAT 1 cut(s) 348
MseI TTAA 3 cut(s) 108, 234, 360
MspI CCGG 1 cut(s) 206
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 3 cut(s) 39, 228, 277
NdeII GATC 1 cut(s) 298
NlaIII CATG 4 cut(s) 42, 54, 105, 358
NsbI TGCGCA 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 348
NspI RCATGY 1 cut(s) 42
PflMI CCANNNNNTGG 1 cut(s) 312
PkrI GCNGC 2 cut(s) 119, 245
Psp124BI GAGCTC 1 cut(s) 282
SacI GAGCTC 1 cut(s) 282
SaqAI TTAA 3 cut(s) 108, 234, 360
SatI GCNGC 2 cut(s) 118, 244
Sau3AI GATC 1 cut(s) 298
SduI GDGCHC 3 cut(s) 259, 273, 282
SetI ASST 5 cut(s) 11, 62, 217, 282, 289
SfaNI GCATC 2 cut(s) 177, 333
SfcI CTRYAG 1 cut(s) 172
Sse9I AATT 5 cut(s) 69, 78, 146, 235, 248
SsiI CCGC 1 cut(s) 275
SspMI CTAG 1 cut(s) 288
SstI GAGCTC 1 cut(s) 282
StyI CCWWGG 1 cut(s) 112
TasI AATT 5 cut(s) 69, 78, 146, 235, 248
Tru1I TTAA 3 cut(s) 108, 234, 360
Tru9I TTAA 3 cut(s) 108, 234, 360
TseI GCWGC 2 cut(s) 117, 243
TspDTI ATGAA 3 cut(s) 7, 90, 102
TspGWI ACGGA 1 cut(s) 141
Van91I CCANNNNNTGG 1 cut(s) 312
XceI RCATGY 1 cut(s) 42
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 1 cut(s) 288
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.